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metagenomics00-overview

Metagenomics course overview

https://github.com/cloud-span/metagenomics00-overview

Science Score: 75.0%

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Metagenomics course overview

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Created about 4 years ago · Last pushed over 1 year ago
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README.md

Project Status: Active – The project has reached a stable, usable state and is being actively developed. DOI

Metagenomics Overview

Overview of the Cloud-SPAN Metagenomics module

Cloud-SPAN is a collaboration between the Department of Biology, University of York and The Software Sustainability Institute funded by the UKRI innovation scholars award (Project Reference: MR/V038680/1) which trains researchers, and the research software engineers that support them, to run specialised analyses on cloud-based high-performance computing infrastructure

The site infrastructure is based on The Carpentries.

This course teaches data analysis for metagenomics projects. It covers how to: - generate and QC a metagenome assembly - ‘bin’ the assembly into metagenome assembled genomes (MAGs) also known as bins - identify the taxonomy of these MAGs. - calculate diversity metrics and add functional annotation to identify the products of genes identified in the assembled MAGs.

Owner

  • Name: Cloud-SPAN
  • Login: Cloud-SPAN
  • Kind: organization
  • Email: cloud-span-project@york.ac.uk

Cloud-based High Performance Computing for SPecialised ANalyses on environmental 'omics

Citation (CITATION.cff) 

cff-version: 1.1.0
message: "If you reuse this training material, please cite it as below."
authors:
- family-names: "Buenabad-Chavez"
  given-names: "Jorge"
- family-names: "Cansdale"
  given-names: "Annabel"
  orcid: "https://orcid.org/0000-0001-9548-3110"
- family-names: "Chong"
  given-names: "James"
  orcid: "https://orcid.org/0000-0001-9447-7421"
- family-names: "Forrester"
  given-names: "Sarah"
  orcid: "https://orcid.org/0000-0001-8332-7196"
- family-names: "Greeves"
  given-names: "Evelyn"
  orcid: "https://orcid.org/0000-0003-4800-3422"
- family-names: "Rand"
  given-names: "Emma"
  orcid: "https://orcid.org/0000-0002-1358-8275"
title: "Cloud-SPAN Metagenomics Course: Overview"
version: 1.0.0
doi: 10.5281/zenodo.7505859
date-released: 2022-10-01
url: "https://cloud-span.github.io/metagenomics00-overview/"

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