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Open Source Science

https://github.com/danforthcenter/pcvr

R functions for use with plantCV output

https://github.com/danforthcenter/pcvr

Science Score: 26.0%

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    CITATION.cff file
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    codemeta.json file
    Found codemeta.json file
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    .zenodo.json file
    Found .zenodo.json file
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    DOI references
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    Scientific vocabulary similarity
    Low similarity (14.7%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

R functions for use with plantCV output

Basic Info
Statistics
  • Stars: 5
  • Watchers: 4
  • Forks: 0
  • Open Issues: 1
  • Releases: 0
Created over 3 years ago · Last pushed 12 months ago
Metadata Files
Readme Changelog

README.md

pcvr pcvr Logo

R-CMD-check Coverage Status <!-- badges: end -->

R functions for use with plantCV output

Installation

A stable version of pcvr can be installed from CRAN

install.packages("pcvr") library(pcvr)

Alternatively, the development version of pcvr can be installed using remotes/devtools install_github as shown below. Note that the default behavior in devtools/remotes is to only install true dependencies. Several functions in pcvr use specific packages that would otherwise not be needed for most work, notably the brms supporting functions. To install suggested packages (see DESCRIPTION file) add dependencies=T to the install_github function call.

devtools::install_github("danforthcenter/pcvr", build_vignettes=T) # to install without building vignettes set the build_vignettes argument to F or exclude it. library(pcvr)

Usage

Please see the bellwether vignette for a general introduction to pcvr. In the future we expect to have more vignettes and to specialize each to some degree.

``` vignette("bellwether", package="pcvr")

or

browseVignettes("pcvr") ```

Feedback

Please report bugs and make feature requests with issues in this repository.

Owner

  • Name: Donald Danforth Plant Science Center
  • Login: danforthcenter
  • Kind: organization
  • Location: St. Louis, MO

Our Mission: Improve the Human Condition Through Plant Science

GitHub Events

Total
  • Watch event: 1
  • Delete event: 16
  • Issue comment event: 27
  • Push event: 107
  • Pull request event: 34
  • Create event: 22
Last Year
  • Watch event: 1
  • Delete event: 16
  • Issue comment event: 27
  • Push event: 107
  • Pull request event: 34
  • Create event: 22

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 517
  • Total Committers: 2
  • Avg Commits per committer: 258.5
  • Development Distribution Score (DDS): 0.046
Past Year
  • Commits: 517
  • Committers: 2
  • Avg Commits per committer: 258.5
  • Development Distribution Score (DDS): 0.046
Top Committers
Name Email Commits
Josh Sumner 5****r 493
joshqsumner j****r@g****m 24

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 0
  • Total pull requests: 147
  • Average time to close issues: N/A
  • Average time to close pull requests: about 19 hours
  • Total issue authors: 0
  • Total pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.21
  • Merged pull requests: 138
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 30
  • Average time to close issues: N/A
  • Average time to close pull requests: about 17 hours
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.73
  • Merged pull requests: 22
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • joshqsumner (3)
Pull Request Authors
  • joshqsumner (185)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 260 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 4
  • Total maintainers: 1
cran.r-project.org: pcvr

Plant Phenotyping and Bayesian Statistics

  • Versions: 4
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 260 Last month
Rankings
Dependent packages count: 28.3%
Dependent repos count: 34.9%
Average: 49.9%
Downloads: 86.7%
Maintainers (1)
jsumner@danforthcenter.org
Last synced: 11 months ago

Dependencies

.github/workflows/install.yml actions
  • actions/checkout v3 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION cran
  • R >= 3.5.0 depends
  • FactoMineR * imports
  • bayestestR * imports
  • data.table * imports
  • extraDistr * imports
  • ggplot2 * imports
  • ggpubr * imports
  • ggridges * imports
  • igraph * imports
  • jsonlite * imports
  • lme4 * imports
  • methods * imports
  • mgcv * imports
  • parallel * imports
  • patchwork * imports
  • scales * imports
  • stats * imports
  • utils * imports
  • viridis * imports
  • brms * suggests
  • caret * suggests
  • cmdstanr * suggests
  • curl * suggests
  • knitr * suggests
  • rmarkdown * suggests
  • rstan * suggests
  • testthat >= 3.0.0 suggests
  • vroom * suggests