https://github.com/databio/bbconf
Configuration package for bedbase project
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.7%) to scientific vocabulary
Keywords
Repository
Configuration package for bedbase project
Basic Info
- Host: GitHub
- Owner: databio
- License: bsd-2-clause
- Language: Python
- Default Branch: master
- Homepage: https://pypi.org/project/bbconf/
- Size: 1.84 MB
Statistics
- Stars: 0
- Watchers: 10
- Forks: 2
- Open Issues: 4
- Releases: 30
Topics
Metadata Files
README.md
bbconf
BEDBASE project configuration package (agent)
What is this?
bbconf is a configuration and management tool for BEDbase, facilitating the reading of configuration files,
setting up connections to PostgreSQL, PEPhub, S3, and Qdrant databases, managing file paths, and storing transformer models.
It formalizes communication pathways for pipelines and downstream tools, ensuring seamless interaction."
Documentation: https://docs.bedbase.org/bedboss
Source Code: https://github.com/databio/bbconf
Installation
To install bbclient use this command:
pip install bbclient
or install the latest version from the GitHub repository:
pip install git+https://github.com/databio/bbconf.git
Owner
- Name: Databio
- Login: databio
- Kind: organization
- Location: University of Virginia
- Website: https://databio.org
- Repositories: 88
- Profile: https://github.com/databio
Solving problems in computational biology
GitHub Events
Total
- Create event: 20
- Issues event: 22
- Release event: 13
- Delete event: 10
- Issue comment event: 9
- Push event: 110
- Pull request event: 30
- Pull request review comment event: 27
- Pull request review event: 23
Last Year
- Create event: 20
- Issues event: 22
- Release event: 13
- Delete event: 10
- Issue comment event: 9
- Push event: 110
- Pull request event: 30
- Pull request review comment event: 27
- Pull request review event: 23
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 42
- Total pull requests: 59
- Average time to close issues: 3 months
- Average time to close pull requests: 10 days
- Total issue authors: 4
- Total pull request authors: 6
- Average comments per issue: 1.86
- Average comments per pull request: 0.22
- Merged pull requests: 55
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 12
- Pull requests: 33
- Average time to close issues: about 1 month
- Average time to close pull requests: 9 days
- Issue authors: 2
- Pull request authors: 1
- Average comments per issue: 0.5
- Average comments per pull request: 0.09
- Merged pull requests: 30
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- khoroshevskyi (20)
- nsheff (14)
- joseverdezoto (5)
- stolarczyk (2)
Pull Request Authors
- khoroshevskyi (58)
- xuebingjie1990 (6)
- stolarczyk (3)
- donaldcampbelljr (2)
- nleroy917 (1)
- nsheff (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- pypi 389 last-month
- Total dependent packages: 2
- Total dependent repositories: 2
- Total versions: 31
- Total maintainers: 3
pypi.org: bbconf
Configuration package for bedbase project
- Homepage: https://databio.org
- Documentation: https://bbconf.readthedocs.io/
- License: BSD2
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Latest release: 0.11.4
published 9 months ago
Rankings
Maintainers (3)
Dependencies
- logmuse *
- pipestat >=0.3.0
- yacman >=0.7.1
- pytest * test
- pytest-cov * test
- actions/checkout v2 composite
- actions/setup-python v2 composite
- psf/black 20.8b1 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- codecov/codecov-action v1 composite
- postgres * docker