Data

Tools

Indexes

Applications

Experiments

Open Source Science

Recent Releases of https://github.com/databio/bbconf

https://github.com/databio/bbconf - v0.11.4

Changes:

  • Updated sql search for bed files

- Python
Published by khoroshevskyi 12 months ago

https://github.com/databio/bbconf - v0.11.3

Changes:

  • Usage tracker
  • Order of comprehensive stats
  • Platform usage stats method
  • Concise option in stats method
  • Added sort by genome for unprocessed bed files query

- Python
Published by khoroshevskyi about 1 year ago

https://github.com/databio/bbconf - v0.11.2

Changes:

  • Updated platform stats

- Python
Published by khoroshevskyi about 1 year ago

https://github.com/databio/bbconf - v0.11.1

Changes

  • Fixes in bedbuncher

- Python
Published by khoroshevskyi about 1 year ago

https://github.com/databio/bbconf - v0.11.0

Changes:

  • Added usage tracking and statistics
  • Added platform comprehensive statistics
  • Updated database to a new database schema
  • Added new items for bed compliance
  • Added head of bed file as a new column in bed table
  • Added file digest column to the file table
  • Changed global sample and project source to be an array instead of string

- Python
Published by khoroshevskyi about 1 year ago

https://github.com/databio/bbconf - v0.10.4

Fixed:

  • Changes boto3 #78

- Python
Published by khoroshevskyi over 1 year ago

https://github.com/databio/bbconf - v0.10.3

Changes

  • Added config analyzer
  • Added new methods get_missing_stats and get_missing_files to retrieve lists of bed files that are missing statistics and files, respectively.
  • Fixed bugs in updating bed files

- Python
Published by khoroshevskyi over 1 year ago

https://github.com/databio/bbconf - v0.10.2

Changes:

Requirement bug fix

- Python
Published by khoroshevskyi over 1 year ago

https://github.com/databio/bbconf - v0.10.1

Changes:

  • Updated geo status tables

- Python
Published by khoroshevskyi over 1 year ago

https://github.com/databio/bbconf - v0.10.0

Changes

  • Added a new method get_neighbours in bbconf/modules/bedfiles.py to retrieve the nearest neighbors of a bed file from Qdrant.
  • Added a new method sql_search in bbconf/modules/bedfiles.py for performing SQL exact searches on bed files.
  • Added a new method get_track_hub_file in bbconf/modules/bedsets.py to generate track hub files for bedsets.
  • Updated exception handling in the create method of bbconf/modules/bedsets.py to provide more specific error messages.
  • Added processed for uploading bed files and bedsets
  • Added update bedfile method

- Python
Published by khoroshevskyi over 1 year ago

https://github.com/databio/bbconf - v0.9.0

Changed

  • Fixed bug with uploading tss dist plot\

Added

  • Added annotations to bedsets (author, source)
  • getgenomelist method to bedfiles, that lists all available genomes
  • Added method that lists all missing plots for bedfiles (getmissingplots)

- Python
Published by khoroshevskyi over 1 year ago

https://github.com/databio/bbconf - v0.8.0

Changes:

  • New text2vec search (bivec search)
  • Added get_pep to bedset methods

- Python
Published by khoroshevskyi over 1 year ago

https://github.com/databio/bbconf - v0.7.1

Changes

  • Updated requirements
  • Fixed initialization of bbagnet without models

- Python
Published by khoroshevskyi over 1 year ago

https://github.com/databio/bbconf - v0.7.0

Changes:

  • Added table with standardized bed annotation
  • Added table with bed reference genome prediction values.
  • Updated requirements

- Python
Published by khoroshevskyi over 1 year ago

https://github.com/databio/bbconf - v0.6.1

Changes:

  • Added GEO upload status

- Python
Published by khoroshevskyi almost 2 years ago

https://github.com/databio/bbconf - v0.6.0

Changes: - Added tokenized files and universes. - Added bed embedding get endpoint to the API #50 - Fixed test speed #48 - Added license for the bed files #51 - Added payloads to qdrant - Fixed search, and query results info - Many other small bug fixes

- Python
Published by khoroshevskyi almost 2 years ago

https://github.com/databio/bbconf - v0.5.1

Small fixes

- Python
Published by khoroshevskyi about 2 years ago

https://github.com/databio/bbconf - v0.5.0

NEW bbconf with bbagent and new configurations

- Python
Published by khoroshevskyi about 2 years ago

https://github.com/databio/bbconf - v0.4.2

small database tweaks

- Python
Published by khoroshevskyi about 2 years ago

https://github.com/databio/bbconf - v0.4.1

  • Updated database schema
  • Upgraded pydantic version to 2.0
  • Updated docs

- Python
Published by khoroshevskyi over 2 years ago

https://github.com/databio/bbconf - v0.4.0

  • Updated to the newest version of pipestat
  • New schema
  • Fixed bugs
  • Added qdrant search

- Python
Published by khoroshevskyi over 2 years ago

https://github.com/databio/bbconf - v0.4.0a4

v0.4.0a4

- Python
Published by donaldcampbelljr over 2 years ago

https://github.com/databio/bbconf - v0.4.0a2

- Python
Published by khoroshevskyi over 2 years ago

https://github.com/databio/bbconf - v0.4.0a1

Changed bbconf to use new pipestat and SQLmodel

- Python
Published by khoroshevskyi almost 3 years ago

https://github.com/databio/bbconf - v0.3.1

- Python
Published by xuebingjie1990 almost 4 years ago

https://github.com/databio/bbconf - v0.2.0

What's Changed

  • Orm by @xuebingjie1990 in https://github.com/databio/bbconf/pull/12

Full Changelog: https://github.com/databio/bbconf/compare/v0.1.1...v0.2.0

- Python
Published by xuebingjie1990 over 4 years ago

https://github.com/databio/bbconf - v0.1.1

- Python
Published by xuebingjie1990 about 5 years ago

https://github.com/databio/bbconf - v0.1.0

- Python
Published by stolarczyk over 5 years ago

https://github.com/databio/bbconf - v0.0.2

- Python
Published by stolarczyk about 6 years ago

https://github.com/databio/bbconf - v0.0.1

- Python
Published by stolarczyk over 6 years ago