https://github.com/datalad/datalad-neuroimaging

DataLad extension for neuroimaging research

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
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.zenodo.json file
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DOI references
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Academic publication links
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Committers with academic emails
2 of 12 committers (16.7%) from academic institutions
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (13.3%) to scientific vocabulary

Keywords

datalad neuroimaging

Keywords from Contributors

closember data-storage git-annex usable rdm bids optimizing-compiler fmri standards eeg

Last synced: 9 months ago · JSON representation

Repository

DataLad extension for neuroimaging research

Basic Info

Host: GitHub
Owner: datalad
License: other
Language: Python
Default Branch: master
Homepage: http://datalad.org
Size: 430 KB

Statistics

Stars: 18
Watchers: 11
Forks: 13
Open Issues: 27
Releases: 14

Topics

datalad neuroimaging

Created about 8 years ago · Last pushed about 1 year ago

Metadata Files

Readme Changelog License

README.md

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|  _ \   __ _ | |_   __ _ | |      __ _   __| |
| | | | / _` || __| / _` || |     / _` | / _` |
| |_| || (_| || |_ | (_| || |___ | (_| || (_| |
|____/  \__,_| \__| \__,_||_____| \__,_| \__,_|
                                   Neuroimaging

This extension enhances DataLad (http://datalad.org) for working with neuroimaging data and workflows. Please see the extension documentation for a description on additional commands and functionality.

For general information on how to use or contribute to DataLad (and this extension), please see the DataLad website or the main GitHub project page.

Installation

Before you install this package, please make sure that you install a recent version of git-annex. Afterwards, install the latest version of datalad-neuroimaging from PyPi. It is recommended to use a dedicated virtualenv:

# create and enter a new virtual environment (optional)
virtualenv --system-site-packages --python=python3 ~/env/dataladni
. ~/env/dataladni/bin/activate

# install from PyPi
pip install datalad_neuroimaging

There is also a Singularity container available. The latest release version can be obtained by running:

singularity pull shub://datalad/datalad-neuroimaging

Support

The documentation of this project is found here: http://docs.datalad.org/projects/neuroimaging

All bugs, concerns and enhancement requests for this software can be submitted here: https://github.com/datalad/datalad-neuroimaging/issues

If you have a problem or would like to ask a question about how to use DataLad, please submit a question to NeuroStars.org with a datalad tag. NeuroStars.org is a platform similar to StackOverflow but dedicated to neuroinformatics.

All previous DataLad questions are available here: http://neurostars.org/tags/datalad/

Acknowledgements

DataLad development is supported by a US-German collaboration in computational neuroscience (CRCNS) project "DataGit: converging catalogues, warehouses, and deployment logistics into a federated 'data distribution'" (Halchenko/Hanke), co-funded by the US National Science Foundation (NSF 1429999) and the German Federal Ministry of Education and Research (BMBF 01GQ1411). Additional support is provided by the German federal state of Saxony-Anhalt and the European Regional Development Fund (ERDF), Project: Center for Behavioral Brain Sciences, Imaging Platform. This work is further facilitated by the ReproNim project (NIH 1P41EB019936-01A1).

Owner

Name: DataLad
Login: datalad
Kind: organization
Email: team@datalad.org
Location: USA&Germany

Website: http://datalad.org
Repositories: 97
Profile: https://github.com/datalad

Data distribution and management platform

GitHub Events

Total

Create event: 2
Issues event: 2
Release event: 2
Watch event: 1
Issue comment event: 9
Push event: 12
Pull request event: 4

Last Year

Create event: 2
Issues event: 2
Release event: 2
Watch event: 1
Issue comment event: 9
Push event: 12
Pull request event: 4

Committers

Last synced: over 3 years ago

All Time

Total Commits: 236
Total Committers: 12
Avg Commits per committer: 19.667
Development Distribution Score (DDS): 0.483

Top Committers

Name	Email	Commits
Michael Hanke	m**e@g**m	122
Yaroslav Halchenko	d**n@o**m	42
Stephan Heunis	s**s@f**e	25
Benjamin Poldrack	b**k@g**m	18
Michał Szczepanik	m**k@f**e	13
Christian Monch	c**h@w**e	5
Benjamin Poldrack	b**k@u**m	3
Michał Szczepanik	m**2@g**m	3
Kyle Meyer	k**e@k**m	2
Adina Wagner	a**r@t**e	1
Remi Gau	r**u@h**m	1
Laura Waite	l**a@w**u	1

Committer Domains (Top 20 + Academic)

fz-juelich.de: 2 waite.eu: 1 t-online.de: 1 kyleam.com: 1 onerussian.com: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time

Total issues: 50
Total pull requests: 63
Average time to close issues: 6 months
Average time to close pull requests: 4 months
Total issue authors: 9
Total pull request authors: 12
Average comments per issue: 1.8
Average comments per pull request: 2.89
Merged pull requests: 50
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 2
Pull requests: 4
Average time to close issues: N/A
Average time to close pull requests: 7 days
Issue authors: 1
Pull request authors: 1
Average comments per issue: 0.0
Average comments per pull request: 3.0
Merged pull requests: 3
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

yarikoptic (24)
jsheunis (13)
mih (3)
bpoldrack (3)
mslw (3)
christian-monch (1)
loj (1)
jwodder (1)
lsempf (1)

Pull Request Authors

yarikoptic (28)
bpoldrack (12)
mih (9)
mslw (5)
christian-monch (4)
jwodder (2)
kyleam (2)
jsheunis (2)
driusan (1)
Remi-Gau (1)
loj (1)
adswa (1)

Top Labels

Issue Labels

fix-implemented (4) bug (3) severity-important (1) semver-documentation (1)

Pull Request Labels

semver-patch (8) release (8) needs-the-best-merge (2) semver-internal (2) semver-documentation (2) fix-implemented (1)

Packages

Total packages: 2
Total downloads:
- pypi 433 last-month
Total docker downloads: 11

Total dependent packages: 1
(may contain duplicates)
Total dependent repositories: 2
(may contain duplicates)
Total versions: 27
Total maintainers: 4

pypi.org: datalad-neuroimaging

DataLad extension package for neuro/medical imaging

Homepage: https://github.com/datalad/datalad-neuroimaging
Documentation: https://datalad-neuroimaging.readthedocs.io/
License: MIT
Latest release: 0.3.7
published about 1 year ago

Versions: 24
Dependent Packages: 0
Dependent Repositories: 2
Downloads: 433 Last month
Docker Downloads: 11

Rankings

Docker downloads count: 4.0%

Downloads: 8.8%

Forks count: 9.6%

Average: 9.7%

Dependent packages count: 10.1%

Dependent repos count: 11.6%

Stargazers count: 14.2%

Maintainers (3)

Michael.Hanke yarikoptic bpoldrack

Last synced: 10 months ago

spack.io: py-datalad-neuroimaging

DataLad extension package for neuro/medical imaging

Homepage: https://github.com/datalad/datalad-neuroimaging
License: []
Latest release: 0.3.7
published 10 months ago

Versions: 3
Dependent Packages: 1
Dependent Repositories: 0

Rankings

Dependent repos count: 0.0%

Average: 19.2%

Forks count: 23.2%

Stargazers count: 25.5%

Dependent packages count: 28.1%

Maintainers (1)

adamjstewart

Last synced: 10 months ago

Dependencies

requirements-devel.txt pypi

coverage * development
nose * development
pytest * development
sphinx * development
sphinx_rtd_theme * development

.github/workflows/docbuild.yml actions

actions/checkout v1 composite
actions/setup-python v1 composite

.github/workflows/test_crippledfs.yml actions

actions/checkout v1 composite
actions/setup-python v1 composite