01genomics

Project management for cloud genomics

https://github.com/cloud-span/01genomics

Science Score: 75.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
    Found 3 DOI reference(s) in README
  • Academic publication links
    Links to: zenodo.org
  • Academic email domains
  • Institutional organization owner
    Organization cloud-span has institutional domain (cloud-span.york.ac.uk)
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (6.3%) to scientific vocabulary

Keywords

command-line-interface educational-resources genomic-data-analysis training-materials
Last synced: 6 months ago · JSON representation ·

Repository

Project management for cloud genomics

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Topics
command-line-interface educational-resources genomic-data-analysis training-materials
Created about 4 years ago · Last pushed about 2 years ago
Metadata Files
Readme Contributing License Code of conduct Citation Authors Zenodo

README.md

Project Status: Active – The project has reached a stable, usable state and is being actively developed. DOI

Genomics Session 1. Project management for cloud genomics

First session of the Cloud-SPAN Genomics course.

Cloud-SPAN is a collaboration between the Department of Biology, University of York and The Software Sustainability Institute funded by the UKRI innovation scholars award (Project Reference: MR/V038680/1) which trains researchers, and the research software engineers that support them, to run specialised analyses on cloud-based high-performance computing infrastructure The course is based on the Data Carpentry’s Genomics Workshop, streamlined and extended to serve as the foundation course for the Cloud-SPAN advanced modules. The edited material is not endorsed by Data Carpentry or the Carpentries in general.

Owner

  • Name: Cloud-SPAN
  • Login: Cloud-SPAN
  • Kind: organization
  • Email: cloud-span-project@york.ac.uk

Cloud-based High Performance Computing for SPecialised ANalyses on environmental 'omics

Citation (CITATION.cff)

cff-version: 1.1.0
message: "If you reuse this training material, please cite it as below."
authors:
- family-names: "Buenabad-Chavez"
  given-names: "Jorge"
- family-names: "Cansdale"
  given-names: "Annabel"
  orcid: "https://orcid.org/0000-0001-9548-3110"
- family-names: "Chong"
  given-names: "James"
  orcid: "https://orcid.org/0000-0001-9447-7421"
- family-names: "Forrester"
  given-names: "Sarah"
  orcid: "https://orcid.org/0000-0001-8332-7196"
- family-names: "Greeves"
  given-names: "Evelyn"
  orcid: "https://orcid.org/0000-0003-4800-3422"
- family-names: "Rand"
  given-names: "Emma"
  orcid: "https://orcid.org/0000-0002-1358-8275"
title: "Cloud-SPAN Genomics Course: Project Management for Cloud Genomics"
version: 0.1.0
doi: 10.5281/zenodo.5582906
date-released: 2022-03-01
url: "https://cloud-span.github.io/01genomics/"
references:
  - authors:
    - family-names: "Lemus"
      given-names: "Roselyn"
    - family-names: "Gui"
      given-names: "Yujuan"
    - family-names: "Kuzak"
      given-names: "Mateusz"
    date-released: "2017-11-01"
    doi: 10.5281/zenodo.1064242
    repository-code: "https://github.com/datacarpentry/organization-genomics"
    title: "Data Carpentry: Genomics Organization Lesson"
    type: software
    version: v2017.11.0

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