Science Score: 75.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 3 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Academic email domains
-
✓Institutional organization owner
Organization cloud-span has institutional domain (cloud-span.york.ac.uk) -
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (6.1%) to scientific vocabulary
Keywords
Repository
Data preparation and organisation
Basic Info
- Host: GitHub
- Owner: Cloud-SPAN
- License: other
- Language: Python
- Default Branch: gh-pages
- Homepage: https://cloud-span.github.io/02genomics/
- Size: 51.2 MB
Statistics
- Stars: 0
- Watchers: 3
- Forks: 0
- Open Issues: 0
- Releases: 1
Topics
Metadata Files
README.md
Genomics Session 2. Data Preparation and organisation
Second session of the Cloud-SPAN Genomics course.
Cloud-SPAN is a collaboration between the Department of Biology, University of York and The Software Sustainability Institute funded by the UKRI innovation scholars award (Project Reference: MR/V038680/1) which trains researchers, and the research software engineers that support them, to run specialised analyses on cloud-based high-performance computing infrastructure The course is based on the Data Carpentry’s Genomics Workshop, streamlined and extended to serve as the foundation course for the Cloud-SPAN advanced modules. The edited material is not endorsed by Data Carpentry or the Carpentries in general.
Owner
- Name: Cloud-SPAN
- Login: Cloud-SPAN
- Kind: organization
- Email: cloud-span-project@york.ac.uk
- Website: http://cloud-span.york.ac.uk/
- Repositories: 24
- Profile: https://github.com/Cloud-SPAN
Cloud-based High Performance Computing for SPecialised ANalyses on environmental 'omics
Citation (CITATION.cff)
cff-version: 1.1.0
message: "If you reuse this training material, please cite it as below."
authors:
- family-names: "Buenabad-Chavez"
given-names: "Jorge"
- family-names: "Cansdale"
given-names: "Annabel"
orcid: "https://orcid.org/0000-0001-9548-3110"
- family-names: "Chong"
given-names: "James"
orcid: "https://orcid.org/0000-0001-9447-7421"
- family-names: "Forrester"
given-names: "Sarah"
orcid: "https://orcid.org/0000-0001-8332-7196"
- family-names: "Greeves"
given-names: "Evelyn"
orcid: "https://orcid.org/0000-0003-4800-3422"
- family-names: "Rand"
given-names: "Emma"
orcid: "https://orcid.org/0000-0002-1358-8275"
title: "Cloud-SPAN Genomics Course: Data Preparation & Organisation"
version: 0.1.0
doi: 10.5281/zenodo.5583151
date-released: 2022-03-01
url: "https://cloud-span.github.io/02genomics/"
references:
- authors:
- family-names: "Becker"
given-names: "Erin Alison"
- family-names: "Teal"
given-names: "Tracy"
- family-names: "Michonneau"
given-names: "Francois"
- family-names: "Schurch"
given-names: "Anita"
- family-names: "McKay"
given-names: "Sheldon John"
- family-names: "Mizzi"
given-names: "Jessica Elizabeth"
date-released: "2019-06-01"
doi: 10.5281/zenodo.3260560
repository-code: "https://github.com/datacarpentry/shell-genomics/"
title: "Data Carpentry: Introduction to the shell for genomics data"
type: software
version: v2019.06.1
- authors:
- family-names: "Becker"
given-names: "Erin Alison"
- family-names: "Reiter"
given-names: "Taylor"
- family-names: "Psomopoulos"
given-names: "Fotis"
- family-names: "Williams"
given-names: "Jason"
- family-names: "McKay"
given-names: "Sheldon John"
- family-names: "Mizzi"
given-names: "Jessica Elizabeth"
- family-names: "Kretzschmar"
given-names: "Winni"
date-released: "2019-06-01"
doi: 10.5281/zenodo.3260609
repository-code: "https://github.com/datacarpentry/wrangling-genomics/"
title: "Data Carpentry: Genomics data wrangling and processing"
type: software
version: v2019.06.1
GitHub Events
Total
Last Year
Dependencies
- github-pages >= 0 development