philharmonic - v0.8.1

What's Changed

• Update GitHub Actions by @samsledje in https://github.com/samsledje/philharmonic/pull/11

Testing automatic publishing

Full Changelog: https://github.com/samsledje/philharmonic/compare/v0.8.0...v0.8.1

- Jupyter Notebook
Published by samsledje over 1 year ago

philharmonic - v0.8.0

What's Changed

• Merge dev for version 0.8.0 by @samsledje in https://github.com/samsledje/philharmonic/pull/10

Full Changelog: https://github.com/samsledje/philharmonic/compare/v0.7.2...v0.8.0

- Jupyter Notebook
Published by samsledje over 1 year ago

philharmonic - v0.7.2

What's Changed

• Overhauls to packaging and running on colab by @samsledje in https://github.com/samsledje/philharmonic/pull/9

Full Changelog: https://github.com/samsledje/philharmonic/compare/v0.7.0...v0.7.2

- Jupyter Notebook
Published by samsledje over 1 year ago

philharmonic - v0.7.0

What's Changed

• Fixed source proteins and dropped sparse expression by @samsledje in https://github.com/samsledje/philharmonic/pull/5
• use recipe for functional enrichment tests by @samsledje in https://github.com/samsledje/philharmonic/pull/6
• Update automatic naming of clusters with llm command line utility by @samsledje in https://github.com/samsledje/philharmonic/pull/7
• Clean up notebooks for cluster analysis and generating figures for paper by @samsledje in https://github.com/samsledje/philharmonic/pull/8
• Add type checking, formatting, listing, other software engineering-y stuff
• Update snakemake logging

Full Changelog: https://github.com/samsledje/philharmonic/compare/v0.6.0...v0.7.0

- Jupyter Notebook
Published by samsledje over 1 year ago

philharmonic - v0.6.0

Downstream analysis notebooks

What's Changed

• Update analysis notebooks by @samsledje in https://github.com/samsledje/philharmonic/pull/4

Full Changelog: https://github.com/samsledje/philharmonic/compare/v0.5.0...v0.6.0

- Jupyter Notebook
Published by samsledje over 1 year ago

philharmonic - v0.5.0

Ready-to-use version of philharmonic

Full Changelog: https://github.com/samsledje/philharmonic/compare/v0.4.0...v0.5.0

- Jupyter Notebook
Published by samsledje over 1 year ago

philharmonic - v0.4.0

What's Changed

• Update interface to use Typer package by @samsledje in https://github.com/samsledje/philharmonic/pull/3
• Several changes to the snakemake pipeline, plus added notebooks for downstream analysis

Full Changelog: https://github.com/samsledje/philharmonic/compare/v0.1.0...v0.4.0

- Jupyter Notebook
Published by samsledje over 1 year ago

philharmonic - v0.1.0

Initial PHILHARMONIC pre-release

Missing RECIPE re-connection steps.

What's Changed

• Merge formatting changes from dev by @samsledje in https://github.com/samsledje/philharmonic/pull/1
• Pre-commit with ruff linting and formatting by @samsledje in https://github.com/samsledje/philharmonic/pull/2

New Contributors

• @samsledje made their first contribution in https://github.com/samsledje/philharmonic/pull/1

Full Changelog: https://github.com/samsledje/philharmonic/commits/v0.1.0

- Jupyter Notebook
Published by samsledje over 1 year ago