Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (11.6%) to scientific vocabulary
Repository
Bayesian implementation of IVW and MR-Egger models
Basic Info
- Host: GitHub
- Owner: okezie94
- License: gpl-3.0
- Language: R
- Default Branch: master
- Homepage: https://okezie94.github.io/mrbayes/
- Size: 17.5 MB
Statistics
- Stars: 4
- Watchers: 1
- Forks: 1
- Open Issues: 0
- Releases: 7
Metadata Files
README.md
mrbayes
<!-- badges: end -->
Bayesian implementation of IVW and MR-Egger models.
Installation instructions
Install the CRAN version with following code:
r
install.packages("mrbayes")
Or install the development version from r-universe with
r
install.packages("mrbayes", repos = c("https://mrcieu.r-universe.dev", "https://cloud.r-project.org"))
or from GitHub with:
``` r
install.packages("remotes") # uncomment if remotes not installed
remotes::install_github("okezie94/mrbayes") ```
Installing JAGS to use the JAGs functions
Using the functions which use JAGS require that the JAGS software is installed.
On macOS the easiest way to install JAGS is through Homebrew with
sh
brew install pkg-config
brew install jags
Alternatively, JAGS installation files for Windows and macOS are available from https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/, and further info can be found on the JAGS website https://mcmc-jags.sourceforge.io/.
In R you can then install rjags from source
r
install.packages("rjags", type = "source")
Package website
The helpfiles are shown on the package website at: https://okezie94.github.io/mrbayes/.
Authors
Okezie Uche-Ikonne, Frank Dondelinger, and Tom Palmer
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use this software, please use the information in the preferred-citation metadata."
authors:
- family-names: "Uche-Ikonne"
given-names: "Okezie"
orcid: "https://orcid.org/0000-0002-8461-8099"
- family-names: "Dondelinger"
given-names: "Frank"
orcid: "https://orcid.org/0000-0003-1816-6300"
- family-names: "Palmer"
given-names: "Tom"
orcid: "https://orcid.org/0000-0003-4655-4511"
title: "mrbayes: R package implementing Bayesian estimation of IVW and MR-Egger models."
type: software
version: 0.4.0
date-released: 2021-07-13
repository-code: "https://github.com/okezie94/mrbayes"
url: "https://okezie94.github.io/mrbayes/"
preferred-citation:
authors:
- family-names: "Uche-Ikonne"
given-names: "Okezie"
orcid: "https://orcid.org/0000-0002-8461-8099"
- family-names: "Dondelinger"
given-names: "Frank"
orcid: "https://orcid.org/0000-0003-1816-6300"
- family-names: "Palmer"
given-names: "Tom"
orcid: "https://orcid.org/0000-0003-4655-4511"
title: "Software Application Profile: Bayesian estimation of inverse variance weighted and MR-Egger models for two-sample Mendelian randomization studies - mrbayes"
type: article
journal: "International Journal of Epidemiology"
volume: 50
issue: 1
start: 43
end: 49
year: 2021
url: https://doi.org/10.1093/ije/dyaa191
doi: 10.1093/ije/dyaa191
GitHub Events
Total
- Push event: 24
- Create event: 1
Last Year
- Push event: 24
- Create event: 1
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Tom Palmer | r****t@h****m | 216 |
| okezie94 | 4****4 | 40 |
Issues and Pull Requests
Last synced: 7 months ago
All Time
- Total issues: 1
- Total pull requests: 25
- Average time to close issues: about 1 month
- Average time to close pull requests: 11 days
- Total issue authors: 1
- Total pull request authors: 3
- Average comments per issue: 5.0
- Average comments per pull request: 0.04
- Merged pull requests: 21
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 3
- Average time to close issues: N/A
- Average time to close pull requests: about 1 hour
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 3
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- remlapmot (1)
Pull Request Authors
- remlapmot (22)
- okezie94 (3)
- olivroy (2)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- cran 319 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 7
- Total maintainers: 1
cran.r-project.org: mrbayes
Bayesian Summary Data Models for Mendelian Randomization Studies
- Homepage: https://github.com/okezie94/mrbayes
- Documentation: http://cran.r-project.org/web/packages/mrbayes/mrbayes.pdf
- License: GPL-3
-
Latest release: 0.5.2
published over 1 year ago
Rankings
Maintainers (1)
Dependencies
- R >= 3.5.0 depends
- Rcpp >= 0.12.0 imports
- methods * imports
- plyr * imports
- rstan >= 2.18.1 imports
- rstantools >= 2.0.0 imports
- DescTools * suggests
- MendelianRandomization * suggests
- bayesmeta * suggests
- bookdown * suggests
- foreign * suggests
- ggmcmc * suggests
- ggplot2 * suggests
- kableExtra * suggests
- knitr * suggests
- rjags >= 4 suggests
- roxygen2 * suggests
- testthat * suggests
- tidyverse * suggests
- utils * suggests
- actions/checkout v4 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite