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Open Source Science

https://github.com/fertiglab/scatterhatch

https://github.com/fertiglab/scatterhatch

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 5 committers (20.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.8%) to scientific vocabulary
Last synced: 6 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: FertigLab
  • License: other
  • Language: R
  • Default Branch: master
  • Size: 2.19 MB
Statistics
  • Stars: 7
  • Watchers: 6
  • Forks: 4
  • Open Issues: 1
  • Releases: 0
Created almost 6 years ago · Last pushed almost 4 years ago
Metadata Files
Readme License

README.md

scatterHatch

The goal of scatterHatch is to create scatter plots that visually distinguish groups of data using color and texture in sparse or dense datasets.

Why you need scatterHatch?

It is often said that a picture is worth a thousand words. In bioinformatics, visualizations attempt to concisely convey complex relationships between a multitude of factors and groups. One could argue these visualizations are worth a lot more than a thousand words. However, it is important to remember there is a balance between encapsulating large amounts of information in a visualization, and correctly deciphering that same information from a visualization. This balance is not the same for everyone in an audience.

In bioinformatics, scatterplots often contain many groups represented by many colors. Distinguishing among unique groups can be a difficult task for colorblind individuals. This package provides the scatterHatch function that adds a texture to each group in a scatterplot so that colorblind individuals can distinguish groups using two characteristics instead of one.

Installation

You can install scatterHatch directly from the Github source. install.packages("remotes") remotes::install_github("FertigLab/scatterHatchPlots", dependencies = TRUE, build_vignettes = TRUE)

Vignettes

To learn how to use the scatterHatch package, run the vignette below in R.

Owner

  • Name: FertigLab
  • Login: FertigLab
  • Kind: organization
  • Email: ejfertig@jhmi.edu

Software projects in computational biology and bioinformatics in Elana Fertig's lab in Oncology Biostatistics and Bioinformatics at JHMI

GitHub Events

Total
  • Fork event: 1
Last Year
  • Fork event: 1

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 181
  • Total Committers: 5
  • Avg Commits per committer: 36.2
  • Development Distribution Score (DDS): 0.32
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
roofTiles 1****s 123
roofTiles g****s@g****m 34
atuldeshpande a****e@j****u 15
atuldeshpande a****e@g****m 8
Atul a****l@A****l 1
Committer Domains (Top 20 + Academic)
jhu.edu: 1

Issues and Pull Requests

Last synced: about 1 year ago

All Time
  • Total issues: 1
  • Total pull requests: 11
  • Average time to close issues: N/A
  • Average time to close pull requests: 1 day
  • Total issue authors: 1
  • Total pull request authors: 2
  • Average comments per issue: 2.0
  • Average comments per pull request: 0.09
  • Merged pull requests: 9
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • ellispatrick (1)
Pull Request Authors
  • roofTiles (8)
  • atuldeshpande (3)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • bioconductor 6,034 total
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 5
  • Total maintainers: 1
bioconductor.org: scatterHatch

Creates hatched patterns for scatterplots

  • Versions: 5
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 6,034 Total
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 30.8%
Downloads: 92.4%
Maintainers (1)
adeshpande@jhu.edu
Last synced: 7 months ago

Dependencies

DESCRIPTION cran
  • R >= 4.1 depends
  • ggplot2 * imports
  • grDevices * imports
  • grid * imports
  • plyr * imports
  • spatstat.geom * imports
  • stats * imports
  • knitr * suggests
  • rmarkdown * suggests
  • testthat * suggests