Science Score: 44.0%
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✓CITATION.cff file
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✓codemeta.json file
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○Scientific vocabulary similarity
Low similarity (6.4%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: CristinaMoraru
- Language: Julia
- Default Branch: master
- Size: 1.56 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 14
Metadata Files
README.md
DoViP - Do Virus Prediction
DoViP is a workflow designed to integrate the results from several virus predictors: geNomad, DeepVirFinder, VirSorter2, VIBRANT and ViralVerify. Its main features are: * Processing non-integrated viruses (entire contigs defined as "lytic" by various predictors) separately from integrated virus regions (parts of the input contigs deemed by various predictors as temperate/pro-viruses). * Removing host regions (based on CheckV results) and merging overlapping integrated virus regions (including those that span the ends of circularizable contigs). * Selecting final non-integrated virus contigs and integrated virus regions based on i) the number of predictors detecting them; and ii) their completeness, as determined by CheckV.
The choice of the five virus predictors is fully customizable (any combination between 1 and 5 predictors is allowed), as well as the choice for the final selection parameters.
A DoViP workflow is split into three steps:
* Initial prediction step. This is where DoViP runs and/or post-processes the results from the five initial predictors (geNomad, DeepVirFinder, VirSorter2, VIBRANT and ViralVerify).
* Consensus prediction step. This is where DoViP brings together the results from all initial predictors.
* Final thresholding step. This is where DoViP is selecting the final viral contigs/regions.
The user manual for DoViP contains information about its installation and running procedures and is found here.
Owner
- Login: CristinaMoraru
- Kind: user
- Repositories: 1
- Profile: https://github.com/CristinaMoraru
Citation (CITATION.bib)
@misc{DoViP_App.jl,
author = {Cristina Moraru <lilianacristina.moraru@uni-due.de>},
title = {DoViP_App.jl},
url = {https://github.com/CristinaMoraru/DoViP_App.jl},
version = {v1.1.1},
year = {2025},
month = {07}
}
GitHub Events
Total
- Release event: 14
- Delete event: 2
- Push event: 19
- Create event: 10
Last Year
- Release event: 14
- Delete event: 2
- Push event: 19
- Create event: 10