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q2-sample-classifier

q2-sample-classifier: machine-learning tools for microbiome classification and regression - Published in JOSS (2018)

https://github.com/qiime2/q2-sample-classifier

Science Score: 93.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 1 DOI reference(s) in JOSS metadata
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ✓
    JOSS paper metadata
    Published in Journal of Open Source Software

Keywords

hacktoberfest
Last synced: 6 months ago · JSON representation

Repository

QIIME 2 plugin for machine learning prediction of sample data.

Basic Info
  • Host: GitHub
  • Owner: qiime2
  • License: bsd-3-clause
  • Language: Python
  • Default Branch: dev
  • Homepage:
  • Size: 20.3 MB
Statistics
  • Stars: 6
  • Watchers: 11
  • Forks: 34
  • Open Issues: 15
  • Releases: 0
Topics
hacktoberfest
Created almost 9 years ago · Last pushed 6 months ago
Metadata Files
Readme Contributing License Support

README.md

q2-sample-classifier

This is a QIIME 2 plugin. For details on QIIME 2, see https://qiime2.org.

Owner

  • Name: QIIME 2
  • Login: qiime2
  • Kind: organization

JOSS Publication

q2-sample-classifier: machine-learning tools for microbiome classification and regression
Published
October 23, 2018
DOI
Volume 3, Issue 30, Page 934
Authors
Nicholas A. Bokulich ORCID
The Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA
Matthew R. Dillon ORCID
The Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA
Evan Bolyen ORCID
The Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA
Benjamin D. Kaehler ORCID
Research School of Biology, Australian National University, Canberra, Australia
Gavin A. Huttley ORCID
Research School of Biology, Australian National University, Canberra, Australia
J Gregory Caporaso ORCID
The Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA, Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA
Editor
Yo Yehudi ORCID
Tags
microbiome supervised learning amplicon sequencing metagenomics
View PDF Review Thread Software Archive

GitHub Events

Total
  • Delete event: 10
  • Push event: 20
  • Pull request event: 9
  • Create event: 22
Last Year
  • Delete event: 10
  • Push event: 20
  • Pull request event: 9
  • Create event: 22

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 315
  • Total Committers: 22
  • Avg Commits per committer: 14.318
  • Development Distribution Score (DDS): 0.552
Past Year
  • Commits: 12
  • Committers: 2
  • Avg Commits per committer: 6.0
  • Development Distribution Score (DDS): 0.333
Top Committers
Name Email Commits
nbokulich n****h@g****m 141
q2d2 q****y@g****m 94
Matthew Dillon m****n@g****m 21
Liz Gehret 5****t 15
Evan Bolyen e****n@g****m 10
Oddant1 o****1@h****m 8
Anja Adamov 5****a 3
David Rodriguez d****5@g****m 3
Greg Caporaso g****o@g****m 3
Chris Keefe 3****e 2
Jai Ram Rideout j****t@g****m 2
Jiung-Wen 3****n 2
colinvwood 6****d 2
David_Rodriguez 3****9 1
Hannah Hagen 1****p 1
Leo-Simpson 5****n 1
Michal Ziemski m****l@t****m 1
TrellixVulnTeam 1****m 1
Turan Naimey t****y@g****m 1
Valentyn Bezshapkin 6****z 1
cduvallet c****t@g****m 1
justin212k j****k@g****m 1
Committer Domains (Top 20 + Academic)
terrestryal.com: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 38
  • Total pull requests: 62
  • Average time to close issues: over 1 year
  • Average time to close pull requests: about 2 months
  • Total issue authors: 8
  • Total pull request authors: 24
  • Average comments per issue: 1.63
  • Average comments per pull request: 2.32
  • Merged pull requests: 50
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 4
  • Average time to close issues: N/A
  • Average time to close pull requests: 2 days
  • Issue authors: 0
  • Pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 3
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • nbokulich (26)
  • mortonjt (3)
  • thermokarst (3)
  • adamovanja (2)
  • ChrisKeefe (1)
  • Oddant1 (1)
  • ebolyen (1)
  • emollier (1)
Pull Request Authors
  • nbokulich (17)
  • Oddant1 (9)
  • lizgehret (9)
  • q2d2 (4)
  • David-Rod (4)
  • adamovanja (3)
  • colinvwood (3)
  • Jiung-Wen (2)
  • emollier (2)
  • mortonjt (2)
  • athos-ribeiro (2)
  • danteese (1)
  • misialq (1)
  • TrellixVulnTeam (1)
  • valentynbez (1)
Top Labels
Issue Labels
enhancement (8) good first issue (8) help wanted (5) bug-sev:2|low (5) lang:python (4) type:improvement (3) type:bug (3) scope:0|this-project (3) diff:1|beginner (2) time:1|short (2) bug-sev:3|medium (2) bug-type:2|workaround-req (2) weight:0|someday (1) Hacktoberfest (1) src:self (1) bug-type:1|cosmetic (1) bug-type:4|retraction (1) bug-sev:1|negligible (1) weight:2|moderate (1) time:2|medium (1) scope:1|several-projects (1) diff:2|intermediate (1) src:forum (1)
Pull Request Labels
bug-type:3|stops-work (2) enhancement (2) stat:blocking-other (2) type:improvement (1) type:bug (1) stat:DO-NOT-MERGE (1) bug-sev:3|medium (1) lang:python (1) scope:0|this-project (1) src:forum (1) bug-sev:2|low (1) bug-sev:4|high (1)

Dependencies

.github/workflows/add-to-project-ci.yml actions
  • actions/add-to-project v0.3.0 composite
.github/workflows/ci.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v1 composite
  • qiime2/action-library-packaging alpha1 composite