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UglyMol

UglyMol: a WebGL macromolecular viewer focused on the electron density - Published in JOSS (2017)

https://github.com/uglymol/uglymol

Science Score: 95.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 1 DOI reference(s) in JOSS metadata
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 2 committers (50.0%) from academic institutions
  • ○
    Institutional organization owner
  • ✓
    JOSS paper metadata
    Published in Journal of Open Source Software

Keywords

ccp4 crystallography electron-density macromolecular-crystallography molecular-graphics webgl
Last synced: 6 months ago · JSON representation

Repository

Macromolecular viewer for crystallographers (WebGL)

Basic Info
  • Host: GitHub
  • Owner: uglymol
  • License: mit
  • Language: JavaScript
  • Default Branch: master
  • Homepage: https://uglymol.github.io
  • Size: 1.57 MB
Statistics
  • Stars: 38
  • Watchers: 4
  • Forks: 13
  • Open Issues: 1
  • Releases: 1
Topics
ccp4 crystallography electron-density macromolecular-crystallography molecular-graphics webgl
Created over 9 years ago · Last pushed 7 months ago
Metadata Files
Readme License

README.md

npm

UglyMol is a web-based macromolecular viewer focused on electron density.

It makes models and e.den. maps easy to recognize, navigate and interpret -- for crystallographers. It looks like Coot and walks (mouse controls) like Coot. But it's only a viewer. For situations when you want a quick look without downloading the data and starting Coot. For instance, when screening Dimple results in a synchrotron. Of course, for this to work, it needs to be integrated into a website that provides the data access (see the FAQ on how to do it).

Try it:

It also has a reciprocal space spin-off.

UglyMol is a small (~3 KLOC) project forked from Nat Echols' xtal.js. The plan is to keep it small. But if you're missing some functionality, it won't hurt if you get in touch -- use Issues or email.

See the Wiki for more information.

Owner

  • Name: uglymol
  • Login: uglymol
  • Kind: organization

JOSS Publication

UglyMol: a WebGL macromolecular viewer focused on the electron density
Published
October 15, 2017
DOI
Volume 2, Issue 18, Page 350
Authors
Marcin Wojdyr ORCID
Diamond Light Source Ltd, Harwell Campus, Didcot, OX11 0DE, UK, Global Phasing Ltd, Sheraton House, Cambridge, CB3 0AX, UK
Editor
Ariel Rokem ORCID
Tags
protein structure visualization electron density WebGL
View PDF Review Thread Software Archive

GitHub Events

Total
  • Issues event: 3
  • Issue comment event: 6
  • Fork event: 1
Last Year
  • Issues event: 3
  • Issue comment event: 6
  • Fork event: 1

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 407
  • Total Committers: 2
  • Avg Commits per committer: 203.5
  • Development Distribution Score (DDS): 0.002
Past Year
  • Commits: 1
  • Committers: 1
  • Avg Commits per committer: 1.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Marcin Wojdyr w****r@g****m 406
Mark Williams m****s@d****k 1
Committer Domains (Top 20 + Academic)
diamond.ac.uk: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 13
  • Total pull requests: 0
  • Average time to close issues: 8 months
  • Average time to close pull requests: N/A
  • Total issue authors: 9
  • Total pull request authors: 0
  • Average comments per issue: 3.38
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: 17 minutes
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 2.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • JBGreisman (3)
  • stufisher (3)
  • markus2120 (1)
  • ndg63276 (1)
  • colinpalmer (1)
  • olibclarke (1)
  • mgaonach (1)
  • costcohotdog (1)
  • John-Holt-Tessella (1)
  • Anthchirp (1)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 2
  • Total downloads:
    • npm 207 last-month
  • Total dependent packages: 1
    (may contain duplicates)
  • Total dependent repositories: 4
    (may contain duplicates)
  • Total versions: 31
  • Total maintainers: 1
bower.io: uglymol
  • License: mit
  • Latest release: v0.7.2
    published 7 months ago
  • Versions: 16
  • Dependent Packages: 1
  • Dependent Repositories: 0
Rankings
Dependent packages count: 5.1%
Forks count: 13.8%
Stargazers count: 14.4%
Average: 17.7%
Dependent repos count: 37.5%
Last synced: 6 months ago
npmjs.org: uglymol

Macromolecular Viewer for Crystallographers

  • Versions: 15
  • Dependent Packages: 0
  • Dependent Repositories: 4
  • Downloads: 207 Last month
Rankings
Dependent repos count: 5.6%
Forks count: 6.2%
Stargazers count: 6.9%
Downloads: 17.7%
Average: 17.8%
Dependent packages count: 52.4%
Maintainers (1)
wojdyr
Last synced: 6 months ago

Dependencies

package.json npm
  • benchmark ^2.1.0 development
  • chai ^4.0.0 development
  • eslint ^6.8.0 development
  • eslint-config-google ^0.14.0 development
  • flow-bin ^0.131.0 development
  • mocha ^5.2.0 development
  • nyc ^15.1.0 development
  • rollup ^1.32.1 development
  • rollup-plugin-buble ^0.19.0 development
  • rollup-watch ^4.0.0 development
  • serve ^11.3.2 development
  • uglify-js ^3.10.0 development