Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/ivis-at-bilkent/cytoscape.js-graphml

A Cytoscape.js extension to import from and export to GraphML format

https://github.com/ivis-at-bilkent/cytoscape.js-graphml

Science Score: 8.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ✓
    Institutional organization owner
    Organization ivis-at-bilkent has institutional domain (www.cs.bilkent.edu.tr)
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (8.2%) to scientific vocabulary

Keywords

cytoscapejs cytoscapejs-extension graph-drawing graphml network-visualization

Keywords from Contributors

complexity-management diagramming network-analysis bioinformatics biology pathway-analysis sbgn systems-biology undo-redo celldesigner
Last synced: 4 months ago · JSON representation

Repository

A Cytoscape.js extension to import from and export to GraphML format

Basic Info
  • Host: GitHub
  • Owner: iVis-at-Bilkent
  • License: mit
  • Language: JavaScript
  • Default Branch: master
  • Homepage:
  • Size: 128 KB
Statistics
  • Stars: 32
  • Watchers: 12
  • Forks: 8
  • Open Issues: 12
  • Releases: 0
Topics
cytoscapejs cytoscapejs-extension graph-drawing graphml network-visualization
Created over 9 years ago · Last pushed 11 months ago
Metadata Files
Readme License

README.md

cytoscape-graphml

Description

A Cytoscape.js extension to import from a graph in GraphML format or to export the current Cytsocape.js graph to GraphML format, distributed under The MIT License. (demo)

API

cy.graphml() Export the graph as GraphML.

cy.graphml( cyGraphML ) Import the graph as GraphML.

cy.graphml( optionsObj ) Updates the specified options of extension.

optionsObj

js { node: { css: false, data: true, position: true, discludeds: [] }, edge: { css: false, data: true, discludeds: [] }, layoutBy: "cose" // string of layout name or layout function }

Dependencies

  • Cytoscape.js ^3.2.0
  • jQuery ^1.7 || ^2.0 || ^3.0

Usage instructions

Download the library: * via npm: npm install cytoscape-graphml, * via bower: bower install cytoscape-graphml, or * via direct download in the repository (probably from a tag).

require() the library as appropriate for your project:

CommonJS: ```js var cytoscape = require('cytoscape'); var jquery = require('jquery'); var graphml = require('cytoscape-graphml');

graphml( cytoscape, jquery ); // register extension ```

AMD: js require(['cytoscape', 'cytoscape-graphml'], function( cytoscape, graphml ){ graphml( cytoscape ); // register extension });

Plain HTML/JS has the extension registered for you automatically, because no require() is needed.

Publishing instructions

This project is set up to automatically be published to npm and bower. To publish:

  1. Set the version number environment variable: export VERSION=1.2.3
  2. Publish: gulp publish
  3. If publishing to bower for the first time, you'll need to run bower register cytoscape-graphml https://github.com/iVis-at-Bilkent/cytoscape.js-graphml.git

Team

Owner

  • Name: i-Vis at Bilkent
  • Login: iVis-at-Bilkent
  • Kind: organization

i-Vis Research Lab at Bilkent University

GitHub Events

Total
  • Watch event: 1
  • Push event: 1
Last Year
  • Watch event: 1
  • Push event: 1

Committers

Last synced: 5 months ago

All Time
  • Total Commits: 27
  • Total Committers: 6
  • Avg Commits per committer: 4.5
  • Development Distribution Score (DDS): 0.667
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Hasan Balcı b****9@g****m 9
mrsfy m****y@o****m 7
metincansiper m****r@g****m 5
Andrew Faulkner a****r@g****m 3
ugurdogrusoz u****z@g****m 2
Svein Parnas s****n@p****o 1
Committer Domains (Top 20 + Academic)
parnas.no: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 18
  • Total pull requests: 5
  • Average time to close issues: 7 months
  • Average time to close pull requests: 5 months
  • Total issue authors: 13
  • Total pull request authors: 4
  • Average comments per issue: 2.06
  • Average comments per pull request: 1.8
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • SebastianOpriel (3)
  • PermanAtayev (2)
  • canbax (2)
  • Lazloo (2)
  • monprin (1)
  • talhajunaidd (1)
  • nicky1038 (1)
  • jschoch (1)
  • sveinp (1)
  • jonng1000 (1)
  • metincansiper (1)
  • mihairaulea (1)
  • zeeshanullah (1)
Pull Request Authors
  • andfaulkner (2)
  • lukaszkostrzewa (1)
  • Abhi5h3k (1)
  • sveinp (1)
Top Labels
Issue Labels
enhancement (1)
Pull Request Labels

Packages

  • Total packages: 2
  • Total downloads:
    • npm 1,769 last-month
  • Total dependent packages: 3
    (may contain duplicates)
  • Total dependent repositories: 10
    (may contain duplicates)
  • Total versions: 9
  • Total maintainers: 6
npmjs.org: cytoscape-graphml

Import or export the graph in GraphML format.

  • Versions: 4
  • Dependent Packages: 3
  • Dependent Repositories: 10
  • Downloads: 1,769 Last month
Rankings
Downloads: 3.4%
Dependent repos count: 3.7%
Average: 5.4%
Dependent packages count: 5.9%
Forks count: 6.8%
Stargazers count: 7.0%
Maintainers (6)
ivisatbilkent metincansiper livogindo leonarddrv balcihasan mrsfy
Last synced: 5 months ago
bower.io: cytoscape-graphml

Import or export the graph in GraphML format.

  • License: MIT
  • Latest release: 1.0.6
    published about 7 years ago
  • Versions: 5
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 5.1%
Stargazers count: 14.9%
Forks count: 15.6%
Average: 18.3%
Dependent repos count: 37.5%
Last synced: 5 months ago

Dependencies

package-lock.json npm
  • 484 dependencies
package.json npm
  • browserify ^11.2.0 development
  • gulp ^3.9.0 development
  • gulp-derequire ^2.1.0 development
  • gulp-jshint ^1.11.2 development
  • gulp-prompt ^0.1.2 development
  • gulp-replace ^0.5.4 development
  • gulp-shell ^0.5.0 development
  • gulp-util ^3.0.6 development
  • jshint-stylish ^2.0.1 development
  • node-notifier ^4.3.1 development
  • run-sequence ^1.1.4 development
  • vinyl-buffer ^1.0.0 development
  • vinyl-source-stream ^1.1.0 development