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py-templateflow

A python client to query TemplateFlow via pyBIDS

https://github.com/templateflow/python-client

Science Score: 59.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 5 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ✓
    Committers with academic emails
    3 of 10 committers (30.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.3%) to scientific vocabulary

Keywords from Contributors

bids brainweb neuroimaging brain-imaging fmri fmri-preprocessing dataflow dataflow-programming workflow-engine dataflow-engine
Last synced: 7 months ago · JSON representation

Repository

A python client to query TemplateFlow via pyBIDS

Basic Info
Statistics
  • Stars: 8
  • Watchers: 7
  • Forks: 13
  • Open Issues: 10
  • Releases: 52
Created over 7 years ago · Last pushed 8 months ago
Metadata Files
Readme Changelog License Zenodo

README.rst 

A Python client to query TemplateFlow
=====================================

|Zenodo| |preprint| |CircleCI| |Build Status| |Pypi|

Reference anatomies of the brain and corresponding atlases play a central role in experimental
neuroimaging workflows and are the foundation for reporting standardized results.
The choice of such references —i.e., templates— and atlases is one relevant source of methodological
variability across studies, which has recently been brought to attention as an important challenge
to reproducibility in neuroscience.
*TemplateFlow* is a publicly available framework for human and nonhuman brain models.
The framework combines an open database with software for access, management, and vetting,
allowing scientists to distribute their resources under *FAIR* —findable, accessible, interoperable,
reusable— principles.
*TemplateFlow* supports a multifaceted insight into brains across species, and enables multiverse
analyses testing whether results generalize across standard references, scales, and in the long term,
species, thereby contributing to increasing the reliability of neuroimaging results.

Publishing resources in the *TemplateFlow* Archive
--------------------------------------------------
Please check the `Contributing section of the TemplateFlow website
`__.

License information
-------------------
*TemplateFlow* adheres to the 
`general licensing guidelines `__
of the *NiPreps framework*.

License
~~~~~~~
Copyright (c) 2021, the *NiPreps* Developers.

The *TemplateFlow* Python Client is
licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
`http://www.apache.org/licenses/LICENSE-2.0
`__.

Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.

Acknowledgements
----------------
This work is steered and maintained by the `NiPreps Community `__.
The development of this resource was supported by
the Laura and John Arnold Foundation (RAP and KJG),
the NIBIB (R01EB020740, SSG; 1P41EB019936-01A1SSG, YOH),
the NIMH (RF1MH121867, RAP, OE; R24MH114705 and R24MH117179, RAP; 1RF1MH121885 SSG),
NINDS (U01NS103780, RAP), and NSF (CRCNS 1912266, YOH).
OE acknowledges financial support from the SNSF Ambizione project
“*Uncovering the interplay of structure, function, and dynamics of
brain connectivity using MRI*” (grant number 
`PZ00P2_185872 `__).

.. |Zenodo| image:: https://zenodo.org/badge/DOI/10.5281/zenodo.2583289.svg
   :target: https://doi.org/10.5281/zenodo.2583289
.. |CircleCI| image:: https://circleci.com/gh/templateflow/python-client/tree/master.svg?style=shield
   :target: https://circleci.com/gh/templateflow/python-client/tree/master
.. |Build Status| image:: https://github.com/templateflow/python-client/workflows/Python%20package/badge.svg
   :target: https://github.com/templateflow/python-client/actions?query=workflow%3A%22Python+package%22
.. |Pypi| image:: https://img.shields.io/pypi/v/templateflow.svg
   :target: https://pypi.python.org/pypi/templateflow/
.. |preprint| image:: https://img.shields.io/badge/doi-10.1101%2F2021.02.10.430678-blue.svg
   :target: https://doi.org/10.1101/2021.02.10.430678

Owner

  • Name: TemplateFlow
  • Login: templateflow
  • Kind: organization
  • Email: nipreps@gmail.com

FAIR-sharing of multi-scale, multi-species brain models

GitHub Events

Total
  • Create event: 1
  • Release event: 1
  • Issues event: 3
  • Delete event: 1
  • Issue comment event: 7
  • Push event: 13
  • Pull request review event: 6
  • Pull request review comment event: 3
  • Pull request event: 5
  • Fork event: 1
Last Year
  • Create event: 1
  • Release event: 1
  • Issues event: 3
  • Delete event: 1
  • Issue comment event: 7
  • Push event: 13
  • Pull request review event: 6
  • Pull request review comment event: 3
  • Pull request event: 5
  • Fork event: 1

Committers

Last synced: about 3 years ago

All Time
  • Total Commits: 418
  • Total Committers: 10
  • Avg Commits per committer: 41.8
  • Development Distribution Score (DDS): 0.431
Top Committers
Name Email Commits
Oscar Esteban c****e@o****s 238
templateflow-bot n****s@g****m 113
mathiasg m****g@s****u 39
Chris Markiewicz e****s@g****m 10
Christopher J. Markiewicz m****z@s****u 9
wiheto w****n@k****e 4
Mathias Goncalves g****s@g****m 2
Lea Waller l****r@c****e 1
Yaroslav Halchenko d****n@o****m 1
Rastko Ciric r****0@m****u 1
Committer Domains (Top 20 + Academic)
stanford.edu: 2 mymail.pomona.edu: 1 onerussian.com: 1 charite.de: 1 ki.se: 1 oscaresteban.es: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 52
  • Total pull requests: 78
  • Average time to close issues: 9 months
  • Average time to close pull requests: 22 days
  • Total issue authors: 15
  • Total pull request authors: 11
  • Average comments per issue: 1.52
  • Average comments per pull request: 1.36
  • Merged pull requests: 69
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 3
  • Average time to close issues: about 5 hours
  • Average time to close pull requests: 4 months
  • Issue authors: 1
  • Pull request authors: 2
  • Average comments per issue: 1.0
  • Average comments per pull request: 2.0
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • oesteban (34)
  • mgxd (5)
  • synchon (1)
  • effigies (1)
  • wiheto (1)
  • sportnoah14 (1)
  • dlevitas (1)
  • Flamefire (1)
  • jbwexler (1)
  • bpinsard (1)
  • ChristianNSchmitz (1)
  • YuTian315 (1)
  • gourdchen (1)
  • tsalo (1)
  • arokem (1)
Pull Request Authors
  • oesteban (61)
  • mgxd (13)
  • effigies (12)
  • yarikoptic (3)
  • wiheto (1)
  • mfschmidt (1)
  • HippocampusGirl (1)
  • Flamefire (1)
  • EricDeveaud (1)
  • rciric (1)
  • tsalo (1)
Top Labels
Issue Labels
bug (8) enhancement (5) help wanted (2) good first issue (2) documentation (1) future bug (1) wontfix (1)
Pull Request Labels
enhancement (1)

Packages

  • Total packages: 1
  • Total downloads: unknown
  • Total dependent packages: 1
  • Total dependent repositories: 0
  • Total versions: 2
  • Total maintainers: 1
spack.io: py-templateflow

A python client to query TemplateFlow via pyBIDS.

  • Versions: 2
  • Dependent Packages: 1
  • Dependent Repositories: 0
Rankings
Dependent repos count: 0.0%
Average: 20.4%
Forks count: 25.1%
Dependent packages count: 28.1%
Stargazers count: 28.5%
Maintainers (1)
adamjstewart
Last synced: 8 months ago

Dependencies

requirements.txt pypi
  • coverage *
  • pybids >=0.12.1
  • pytest *
  • pytest-cov ==2.5.1
  • pytest-xdist *
  • requests *
  • tqdm *
.github/workflows/pythonpackage.yml actions
  • actions/cache v1 composite
  • actions/checkout v2 composite
  • actions/setup-python v1 composite
docs/environment.yml conda
  • _libgcc_mutex 0.1
  • _openmp_mutex 4.5
  • alabaster 0.7.12
  • astor 0.8.1
  • asttokens 2.0.5
  • atk-1.0 2.36.0
  • attrs 21.4.0
  • babel 2.10.1
  • backcall 0.2.0
  • backports 1.0
  • backports.functools_lru_cache 1.6.4
  • beautifulsoup4 4.11.1
  • bleach 5.0.0
  • brotlipy 0.7.0
  • bzip2 1.0.8
  • c-ares 1.18.1
  • ca-certificates 2021.10.8
  • cairo 1.16.0
  • certifi 2021.10.8
  • cffi 1.15.0
  • charset-normalizer 2.0.12
  • click 8.1.3
  • colorama 0.4.4
  • commonmark 0.9.1
  • cryptography 36.0.2
  • curl 7.83.0
  • decorator 5.1.1
  • defusedxml 0.7.1
  • docutils 0.15.2
  • entrypoints 0.4
  • executing 0.8.3
  • expat 2.4.8
  • font-ttf-dejavu-sans-mono 2.37
  • font-ttf-inconsolata 3.000
  • font-ttf-source-code-pro 2.038
  • font-ttf-ubuntu 0.83
  • fontconfig 2.14.0
  • fonts-conda-ecosystem 1
  • fonts-conda-forge 1
  • freetype 2.10.4
  • fribidi 1.0.10
  • future 0.18.2
  • gdk-pixbuf 2.42.8
  • gettext 0.19.8.1
  • giflib 5.2.1
  • graphite2 1.3.13
  • graphviz 3.0.0
  • greenlet 1.1.2
  • gtk2 2.24.33
  • gts 0.7.6
  • harfbuzz 4.2.1
  • icu 70.1
  • idna 3.3
  • imagesize 1.3.0
  • importlib-metadata 4.11.3
  • importlib_resources 5.7.1
  • interface_meta 1.3.0
  • ipython 8.3.0
  • jbig 2.1
  • jedi 0.18.1
  • jinja2 3.1.2
  • jpeg 9e
  • jsonschema 4.5.1
  • jupyter_client 7.3.0
  • jupyter_core 4.9.2
  • jupyterlab_pygments 0.2.2
  • keyutils 1.6.1
  • krb5 1.19.3
  • ld_impl_linux-64 2.36.1
  • lerc 3.0
  • libblas 3.9.0
  • libcblas 3.9.0
  • libcurl 7.83.0
  • libdeflate 1.10
  • libedit 3.1.20191231
  • libev 4.33
  • libffi 3.4.2
  • libgcc-ng 11.2.0
  • libgd 2.3.3
  • libgfortran-ng 11.2.0
  • libgfortran5 11.2.0
  • libglib 2.70.2
  • libgomp 11.2.0
  • libiconv 1.16
  • liblapack 3.9.0
  • libnghttp2 1.47.0
  • libnsl 2.0.0
  • libopenblas 0.3.20
  • libpng 1.6.37
  • librsvg 2.54.1
  • libsodium 1.0.18
  • libssh2 1.10.0
  • libstdcxx-ng 11.2.0
  • libtiff 4.3.0
  • libtool 2.4.6
  • libuuid 2.32.1
  • libwebp 1.2.2
  • libwebp-base 1.2.2
  • libxcb 1.13
  • libxml2 2.9.14
  • libzlib 1.2.11
  • lz4-c 1.9.3
  • markupsafe 2.1.1
  • matplotlib-inline 0.1.3
  • mistune 0.8.4
  • nbclient 0.6.2
  • nbconvert 6.5.0
  • nbconvert-core 6.5.0
  • nbconvert-pandoc 6.5.0
  • nbformat 5.4.0
  • nbsphinx 0.8.8
  • ncurses 6.3
  • nest-asyncio 1.5.5
  • num2words 0.5.10
  • numpy 1.22.3
  • openssl 1.1.1o
  • packaging 21.3
  • pandoc 2.18
  • pandocfilters 1.5.0
  • pango 1.50.7
  • parso 0.8.3
  • pbr 5.9.0
  • pcre 8.45
  • pexpect 4.8.0
  • pickleshare 0.7.5
  • pip 22.0.4
  • pixman 0.40.0
  • prompt-toolkit 3.0.29
  • pthread-stubs 0.4
  • ptyprocess 0.7.0
  • pure_eval 0.2.2
  • pycparser 2.21
  • pydot 1.4.2
  • pydotplus 2.0.2
  • pygments 2.12.0
  • pyopenssl 22.0.0
  • pyparsing 3.0.8
  • pyrsistent 0.18.1
  • pysocks 1.7.1
  • python 3.9.12
  • python-dateutil 2.8.2
  • python-fastjsonschema 2.15.3
  • python_abi 3.9
  • pytz 2022.1
  • pyzmq 22.3.0
  • readline 8.1
  • requests 2.27.1
  • scipy 1.8.0
  • setuptools 62.1.0
  • six 1.16.0
  • snowballstemmer 2.2.0
  • soupsieve 2.3.1
  • sphinx 4.5.0
  • sphinx-argparse 0.3.1
  • sphinx_rtd_theme 1.0.0
  • sphinxcontrib-apidoc 0.3.0
  • sphinxcontrib-applehelp 1.0.2
  • sphinxcontrib-devhelp 1.0.2
  • sphinxcontrib-htmlhelp 2.0.0
  • sphinxcontrib-jsmath 1.0.1
  • sphinxcontrib-qthelp 1.0.3
  • sphinxcontrib-serializinghtml 1.1.5
  • sqlite 3.38.5
  • stack_data 0.2.0
  • tinycss2 1.1.1
  • tk 8.6.12
  • tomli 2.0.1
  • tornado 6.1
  • tqdm 4.64.0
  • traitlets 5.1.1
  • tzdata 2022a
  • urllib3 1.26.9
  • wcwidth 0.2.5
  • webencodings 0.5.1
  • wheel 0.37.1
  • wrapt 1.14.1
  • xorg-kbproto 1.0.7
  • xorg-libice 1.0.10
  • xorg-libsm 1.2.3
  • xorg-libx11 1.7.2
  • xorg-libxau 1.0.9
  • xorg-libxdmcp 1.1.3
  • xorg-libxext 1.3.4
  • xorg-libxrender 0.9.10
  • xorg-renderproto 0.11.1
  • xorg-xextproto 7.3.0
  • xorg-xproto 7.0.31
  • xz 5.2.5
  • zeromq 4.3.4
  • zipp 3.8.0
  • zlib 1.2.11
  • zstd 1.5.2
pyproject.toml pypi
setup.py pypi