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core

🔵 Application core of BIIGLE

https://github.com/biigle/core

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (7.8%) to scientific vocabulary

Keywords

biigle image-annotation video-annotation
Last synced: 6 months ago · JSON representation ·

Repository

🔵 Application core of BIIGLE

Basic Info
  • Host: GitHub
  • Owner: biigle
  • License: gpl-3.0
  • Language: PHP
  • Default Branch: master
  • Homepage: https://biigle.de
  • Size: 56.2 MB
Statistics
  • Stars: 13
  • Watchers: 4
  • Forks: 18
  • Open Issues: 235
  • Releases: 397
Topics
biigle image-annotation video-annotation
Created almost 10 years ago · Last pushed 6 months ago
Metadata Files
Readme Contributing License Citation Security

README.md

BIIGLE Core

Test status

This is the main application core of BIIGLE.

Contributions and bug reports

Contributions to BIIGLE are always welcome. Check out CONTRIBUTING.md to get started.

Support

If you have a question or request that is not a bug report or feature request, please start a new discussion about it.

Installation

BIIGLE requires Docker and Docker Compose to run.

For Production

Head over to biigle/biigle to configure and build your production instance.

For Development

Take a look at DEVELOPING.md for a detailed explanation on how to develop BIIGLE.

Versions

Although BIIGLE versions and BIIGLE module versions look like semantic versioning, they are not. Only the most recent versions are compatible with each other. Patch versions are mostly backwards compatible, though.

Security Vulnerabilities

If you discover a security vulnerability within BIIGLE, please send an email to the BIIGLE team via info@biigle.de. All security vulnerabilities will be promptly addressed.

Owner

  • Name: BIIGLE
  • Login: biigle
  • Kind: organization
  • Location: Bielefeld University

Citation (CITATION.cff) 

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: BIIGLE
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - given-names: Martin
    family-names: Zurowietz
    email: m.zurowietz@uni-bielefeld.de
    affiliation: 'Biodata Mining Group, Bielefeld University'
    orcid: 'https://orcid.org/0000-0002-7122-2343'
  - given-names: Daniel
    family-names: Langenkämper
    email: dlangenk@cebitec.uni-bielefeld.de
    affiliation: 'Biodata Mining Group, Bielefeld University'
    orcid: 'https://orcid.org/0000-0003-1857-5040'
  - given-names: Tim W.
    family-names: Nattkemper
    email: tim.nattkemper@uni-bielefeld.de
    affiliation: 'Biodata Mining Group, Bielefeld University'
    orcid: 'https://orcid.org/0000-0002-7986-1158'
identifiers:
  - type: doi
    value: 10.3389/fmars.2017.00083
    description: Original paper describing version 2.0 of the software.
  - type: doi
    value: 10.5281/zenodo.5905318
    description: Zenodo archive of the application core.
repository-code: 'https://github.com/biigle/core'
url: 'https://biigle.de'
repository: 'https://github.com/biigle'
abstract: >-
  BIIGLE is a web service for the efficient and rapid
  annotation of still images and videos.
keywords:
  - image-annotation
  - video-annotation
  - image-analysis
license: GPL-3.0

GitHub Events

Total
  • Create event: 141
  • Release event: 37
  • Issues event: 153
  • Watch event: 1
  • Delete event: 112
  • Issue comment event: 181
  • Push event: 584
  • Pull request review event: 195
  • Pull request review comment event: 179
  • Pull request event: 212
  • Fork event: 4
Last Year
  • Create event: 141
  • Release event: 37
  • Issues event: 153
  • Watch event: 1
  • Delete event: 112
  • Issue comment event: 181
  • Push event: 584
  • Pull request review event: 195
  • Pull request review comment event: 179
  • Pull request event: 212
  • Fork event: 4

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 92
  • Total pull requests: 99
  • Average time to close issues: over 1 year
  • Average time to close pull requests: 10 days
  • Total issue authors: 8
  • Total pull request authors: 11
  • Average comments per issue: 0.98
  • Average comments per pull request: 0.41
  • Merged pull requests: 64
  • Bot issues: 1
  • Bot pull requests: 8
Past Year
  • Issues: 56
  • Pull requests: 98
  • Average time to close issues: about 2 months
  • Average time to close pull requests: 7 days
  • Issue authors: 7
  • Pull request authors: 11
  • Average comments per issue: 0.75
  • Average comments per pull request: 0.42
  • Merged pull requests: 64
  • Bot issues: 1
  • Bot pull requests: 7
View more stats
Top Authors
Issue Authors
  • mzur (133)
  • dlangenk (29)
  • lehecht (12)
  • gkourie (3)
  • dbrembilla (3)
  • rjcommanddfo (2)
  • tschoeni (2)
  • dependabot[bot] (2)
  • aburfeid (1)
  • davidsean (1)
  • TimWOceanSciences (1)
  • noeliebenoist (1)
  • mtiessen1175 (1)
  • rskelly (1)
  • AngusLaurenson (1)
Pull Request Authors
  • mzur (106)
  • lehecht (42)
  • dependabot[bot] (37)
  • dlangenk (13)
  • aneust (12)
  • gkourie (8)
  • ToukL (5)
  • anzarbe97 (3)
  • mtiessen1175 (3)
  • abezine (2)
  • Copilot (1)
  • marinmarcillat (1)
  • merlinbest5 (1)
  • developerluanramos (1)
  • dbrembilla (1)
Top Labels
Issue Labels
bug (42) good first issue (17) discuss (7) module (2) dependencies (2) php (1) javascript (1)
Pull Request Labels
dependencies (37) javascript (13) python (10) php (10) github_actions (4) bug (2) good first issue (1)

Dependencies

package-lock.json npm
  • 854 dependencies
package.json npm
  • eslint ^7.3.1 development
  • eslint-plugin-vue ^7.0.0 development
  • laravel-mix ^6.0.42 development
  • resolve-url-loader ^5.0.0 development
  • sass 1.32.* development
  • sass-loader ^8.0.0 development
  • vue-loader ^15.9.6 development
  • vue-template-compiler ^2.6.11 development
  • @biigle/ol ^5.3.0
  • @fortawesome/fontawesome-free ^5.2.0
  • bootstrap-sass ^3.3.7
  • magic-wand-tool ^1.1.4
  • polymorph-js ^0.2.4
  • uiv ^1.2.4
  • vue ^2.0.5
  • vue-resource ^1.0.3
composer.json packagist
  • fakerphp/faker ^1.4 development
  • filp/whoops ^2.0 development
  • friendsofphp/php-cs-fixer ^3.0 development
  • johnkary/phpunit-speedtrap ^4.0 development
  • mockery/mockery ^1.3.1 development
  • nunomaduro/collision ^6.1 development
  • phpunit/phpunit ^9.5 development
  • psalm/plugin-laravel ^2.0 development
  • biigle/laravel-file-cache ^4.0
  • doctrine/dbal ^3.0
  • duncan3dc/bom-string ^1.1
  • ext-exif *
  • ext-json *
  • ext-pgsql *
  • ext-soap *
  • ext-vips *
  • ext-yaml *
  • fruitcake/laravel-cors ^2.0
  • guzzlehttp/guzzle ^7.2
  • jcupitt/vips ^1.0
  • laravel/framework ^9.0
  • laravel/tinker ^2.7
  • laravel/ui ^3.0
  • msurguy/honeypot ^1.0
  • php ^8.0.2
  • php-ffmpeg/php-ffmpeg ^1.0
  • ramsey/uuid ^4.0
  • ramsey/uuid-doctrine ^1.8
composer.lock packagist
  • 156 dependencies
requirements.txt pypi
  • Pillow ==9.0.
  • PyExcelerate ==0.6.7
  • Shapely ==1.8.1
  • matplotlib ==3.5.2
  • numpy ==1.22.
  • opencv-contrib-python-headless ==4.6.0
  • scikit-learn *
  • scipy ==1.7.2
docker-compose.yml docker
  • ghcr.io/biigle/app latest
  • ghcr.io/biigle/web latest
  • ghcr.io/biigle/worker latest
  • postgres 14-alpine
  • quay.io/soketi/soketi 1.4-16-alpine