bayesian

Bindings for Bayesian TidyModels

https://github.com/hsbadr/bayesian

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
✓
DOI references
Found 2 DOI reference(s) in README
✓
Academic publication links
Links to: zenodo.org
○
Committers with academic emails
○
Institutional organization owner
○
JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (17.5%) to scientific vocabulary

Keywords

bayesian brms stan tidymodels

Last synced: 6 months ago · JSON representation ·

Repository

Bindings for Bayesian TidyModels

Basic Info

Host: GitHub
Owner: hsbadr
License: other
Language: R
Default Branch: main
Homepage: https://hsbadr.github.io/bayesian/
Size: 6.4 MB

Statistics

Stars: 47
Watchers: 4
Forks: 3
Open Issues: 5
Releases: 11

Topics

bayesian brms stan tidymodels

Created about 5 years ago · Last pushed 6 months ago

Metadata Files

Readme Changelog Contributing License Code of conduct Citation Support

README.Rmd

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# Bindings for Bayesian TidyModels [](https://hsbadr.github.io/bayesian/)


[![Lifecycle: Stable](https://img.shields.io/badge/Lifecycle-Stable-green.svg)](https://lifecycle.r-lib.org/articles/stages.html)
[![Codecov Test Coverage](https://codecov.io/gh/hsbadr/bayesian/branch/main/graph/badge.svg)](https://app.codecov.io/gh/hsbadr/bayesian?branch=main)
[![Last commit](https://img.shields.io/github/last-commit/hsbadr/bayesian)](https://github.com/hsbadr/bayesian/commits/main)
[![Commits since release](https://img.shields.io/github/commits-since/hsbadr/bayesian/latest.svg?color=green)](https://github.com/hsbadr/bayesian/commit/main)
[![R](https://github.com/hsbadr/bayesian/workflows/R/badge.svg)](https://github.com/hsbadr/bayesian/actions)

[![CRAN Status](https://www.r-pkg.org/badges/version/bayesian)](https://CRAN.R-project.org/package=bayesian)
[![CRAN Downloads](https://cranlogs.r-pkg.org/badges/grand-total/bayesian)](https://cran.r-project.org/package=bayesian)
[![License: MIT](https://img.shields.io/badge/License-MIT-blue.svg)](https://github.com/hsbadr/bayesian/blob/main/LICENSE.md)
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.4426836.svg)](https://zenodo.org/doi/10.5281/zenodo.4426836)


[**`bayesian`**](https://hsbadr.github.io/bayesian/) supports Bayesian modeling using [`brms`](https://paul-buerkner.github.io/brms/)/[`Stan`](https://mc-stan.org/)
with [`parsnip`](https://parsnip.tidymodels.org/)/[`tidymodels`](https://www.tidymodels.org/).

## Installation

The stable version of [`bayesian`](https://hsbadr.github.io/bayesian/) can be installed from [CRAN](https://CRAN.R-project.org/package=bayesian) using:

``` r
install.packages("bayesian")
```

The development version of [`bayesian`](https://hsbadr.github.io/bayesian/) can be installed from [GitHub](https://github.com/hsbadr/bayesian) using:

``` r
install.packages("pak")
pak::pkg_install("hsbadr/bayesian")
```

## Example


``` r
library(bayesian)

bayesian_mod <-
  bayesian() |>
  set_engine("brms") |>
  fit(
    rating ~ treat + period + carry + (1 | subject),
    data = inhaler
  )

summary(bayesian_mod$fit)
```

For more details, [get started with `bayesian`](https://hsbadr.github.io/bayesian/articles/GetStarted.html).

## Citation

To cite `bayesian` in publications, please use:

```r
citation("bayesian")
```

> Hamada S. Badr and Paul C. Bürkner (2024):
bayesian: Bindings for Bayesian TidyModels,
[_Comprehensive R Archive Network (CRAN)_](https://cran.r-project.org/package=bayesian).
URL: [https://hsbadr.github.io/bayesian/](https://hsbadr.github.io/bayesian/).

## Contributing

This project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/0/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms.

- For questions and discussions about tidymodels packages, modeling, and machine learning, please [post on RStudio Community](https://forum.posit.co/).

- If you think you have encountered a bug, please [submit an issue](https://github.com/hsbadr/bayesian/issues).

- Either way, learn how to create and share a [reprex](https://reprex.tidyverse.org) (a minimal, reproducible example), to clearly communicate about your code.

- Check out further details on [contributing guidelines for tidymodels packages](https://www.tidymodels.org/contribute/) and [how to get help](https://www.tidymodels.org/help/).

Owner

Name: Hamada S. Badr
Login: hsbadr
Kind: user
Location: Washington, District of Columbia
Company: Amazon Web Services (AWS)

Website: https://hsbadr.github.io
Repositories: 29
Profile: https://github.com/hsbadr

Senior Applied Scientist

Citation (CITATION.cff)

# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "bayesian" in publications use:'
type: software
license: MIT
title: 'bayesian: Bindings for Bayesian TidyModels'
version: 1.0.1
doi: 10.5281/zenodo.4426836
identifiers:
- type: doi
  value: 10.32614/CRAN.package.bayesian
abstract: Fit Bayesian models using 'brms'/'Stan' with 'parsnip'/'tidymodels' via
  'bayesian' <https://doi.org/10.5281/zenodo.4426836>. 'tidymodels' is a collection
  of packages for machine learning; see Kuhn and Wickham (2020) <https://www.tidymodels.org>).
  The technical details of 'brms' and 'Stan' are described in Bürkner (2017) <https://doi.org/10.18637/jss.v080.i01>,
  Bürkner (2018) <https://doi.org/10.32614/RJ-2018-017>, and Carpenter et al. (2017)
  <https://doi.org/10.18637/jss.v076.i01>.
authors:
- family-names: Badr
  given-names: Hamada S.
  email: badr@jhu.edu
  orcid: https://orcid.org/0000-0002-9808-2344
- family-names: Bürkner
  given-names: Paul-Christian
  email: paul.buerkner@gmail.com
preferred-citation:
  type: manual
  title: 'bayesian: Bindings for Bayesian TidyModels'
  authors:
  - family-names: Badr
    given-names: Hamada S.
    email: badr@jhu.edu
    orcid: https://orcid.org/0000-0002-9808-2344
  - family-names: Bürkner
    given-names: Paul C.
    email: paul.buerkner@gmail.com
  year: '2024'
  journal: Comprehensive R Archive Network (CRAN)
  url: https://hsbadr.github.io/bayesian/
  doi: 10.5281/zenodo.4426836
repository: https://CRAN.R-project.org/package=bayesian
repository-code: https://github.com/hsbadr/bayesian
url: https://hsbadr.github.io/bayesian/
contact:
- family-names: Badr
  given-names: Hamada S.
  email: badr@jhu.edu
  orcid: https://orcid.org/0000-0002-9808-2344
keywords:
- bayesian
- brms
- stan
- tidymodels
references:
- type: software
  title: brms
  abstract: 'brms: Bayesian Regression Models using ''Stan'''
  notes: Depends
  url: https://discourse.mc-stan.org/
  repository: https://CRAN.R-project.org/package=brms
  authors:
  - family-names: Bürkner
    given-names: Paul-Christian
    email: paul.buerkner@gmail.com
  year: '2025'
  doi: 10.32614/CRAN.package.brms
  version: '>= 2.21.0'
- type: software
  title: parsnip
  abstract: 'parsnip: A Common API to Modeling and Analysis Functions'
  notes: Depends
  url: https://parsnip.tidymodels.org/
  repository: https://CRAN.R-project.org/package=parsnip
  authors:
  - family-names: Kuhn
    given-names: Max
    email: max@posit.co
  - family-names: Vaughan
    given-names: Davis
    email: davis@posit.co
  year: '2025'
  doi: 10.32614/CRAN.package.parsnip
  version: '>= 1.2.1'
- type: software
  title: 'R: A Language and Environment for Statistical Computing'
  notes: Depends
  url: https://www.R-project.org/
  authors:
  - name: R Core Team
  institution:
    name: 'R Foundation for Statistical Computing (ROR: <https://ror.org/05qewa988>)'
    address: Vienna, Austria
  year: '2025'
  doi: 10.32614/R.manuals
  version: '>= 4.1.0'
- type: software
  title: dplyr
  abstract: 'dplyr: A Grammar of Data Manipulation'
  notes: Imports
  url: https://dplyr.tidyverse.org
  repository: https://CRAN.R-project.org/package=dplyr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: François
    given-names: Romain
    orcid: https://orcid.org/0000-0002-2444-4226
  - family-names: Henry
    given-names: Lionel
  - family-names: Müller
    given-names: Kirill
    orcid: https://orcid.org/0000-0002-1416-3412
  - family-names: Vaughan
    given-names: Davis
    email: davis@posit.co
    orcid: https://orcid.org/0000-0003-4777-038X
  year: '2025'
  doi: 10.32614/CRAN.package.dplyr
- type: software
  title: purrr
  abstract: 'purrr: Functional Programming Tools'
  notes: Imports
  url: https://purrr.tidyverse.org/
  repository: https://CRAN.R-project.org/package=purrr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: Henry
    given-names: Lionel
    email: lionel@posit.co
  year: '2025'
  doi: 10.32614/CRAN.package.purrr
- type: software
  title: rlang
  abstract: 'rlang: Functions for Base Types and Core R and ''Tidyverse'' Features'
  notes: Imports
  url: https://rlang.r-lib.org
  repository: https://CRAN.R-project.org/package=rlang
  authors:
  - family-names: Henry
    given-names: Lionel
    email: lionel@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2025'
  doi: 10.32614/CRAN.package.rlang
- type: software
  title: stats
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: 'R Foundation for Statistical Computing (ROR: <https://ror.org/05qewa988>)'
    address: Vienna, Austria
  year: '2025'
  doi: 10.32614/R.manuals
- type: software
  title: tibble
  abstract: 'tibble: Simple Data Frames'
  notes: Imports
  url: https://tibble.tidyverse.org/
  repository: https://CRAN.R-project.org/package=tibble
  authors:
  - family-names: Müller
    given-names: Kirill
    email: kirill@cynkra.com
    orcid: https://orcid.org/0000-0002-1416-3412
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  year: '2025'
  doi: 10.32614/CRAN.package.tibble
- type: software
  title: utils
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: 'R Foundation for Statistical Computing (ROR: <https://ror.org/05qewa988>)'
    address: Vienna, Austria
  year: '2025'
  doi: 10.32614/R.manuals
- type: software
  title: covr
  abstract: 'covr: Test Coverage for Packages'
  notes: Suggests
  url: https://covr.r-lib.org
  repository: https://CRAN.R-project.org/package=covr
  authors:
  - family-names: Hester
    given-names: Jim
    email: james.f.hester@gmail.com
  year: '2025'
  doi: 10.32614/CRAN.package.covr
- type: software
  title: devtools
  abstract: 'devtools: Tools to Make Developing R Packages Easier'
  notes: Suggests
  url: https://devtools.r-lib.org/
  repository: https://CRAN.R-project.org/package=devtools
  authors:
  - family-names: Wickham
    given-names: Hadley
  - family-names: Hester
    given-names: Jim
  - family-names: Chang
    given-names: Winston
  - family-names: Bryan
    given-names: Jennifer
    email: jenny@rstudio.com
    orcid: https://orcid.org/0000-0002-6983-2759
  year: '2025'
  doi: 10.32614/CRAN.package.devtools
- type: software
  title: future
  abstract: 'future: Unified Parallel and Distributed Processing in R for Everyone'
  notes: Suggests
  url: https://future.futureverse.org
  repository: https://CRAN.R-project.org/package=future
  authors:
  - family-names: Bengtsson
    given-names: Henrik
    email: henrikb@braju.com
    orcid: https://orcid.org/0000-0002-7579-5165
  year: '2025'
  doi: 10.32614/CRAN.package.future
- type: software
  title: knitr
  abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
  notes: Suggests
  url: https://yihui.org/knitr/
  repository: https://CRAN.R-project.org/package=knitr
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2025'
  doi: 10.32614/CRAN.package.knitr
- type: software
  title: recipes
  abstract: 'recipes: Preprocessing and Feature Engineering Steps for Modeling'
  notes: Suggests
  url: https://recipes.tidymodels.org/
  repository: https://CRAN.R-project.org/package=recipes
  authors:
  - family-names: Kuhn
    given-names: Max
    email: max@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Hvitfeldt
    given-names: Emil
    email: emil.hvitfeldt@posit.co
  year: '2025'
  doi: 10.32614/CRAN.package.recipes
- type: software
  title: rmarkdown
  abstract: 'rmarkdown: Dynamic Documents for R'
  notes: Suggests
  url: https://pkgs.rstudio.com/rmarkdown/
  repository: https://CRAN.R-project.org/package=rmarkdown
  authors:
  - family-names: Allaire
    given-names: JJ
    email: jj@posit.co
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  - family-names: Dervieux
    given-names: Christophe
    email: cderv@posit.co
    orcid: https://orcid.org/0000-0003-4474-2498
  - family-names: McPherson
    given-names: Jonathan
    email: jonathan@posit.co
  - family-names: Luraschi
    given-names: Javier
  - family-names: Ushey
    given-names: Kevin
    email: kevin@posit.co
  - family-names: Atkins
    given-names: Aron
    email: aron@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Chang
    given-names: Winston
    email: winston@posit.co
  - family-names: Iannone
    given-names: Richard
    email: rich@posit.co
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2025'
  doi: 10.32614/CRAN.package.rmarkdown
- type: software
  title: roxygen2
  abstract: 'roxygen2: In-Line Documentation for R'
  notes: Suggests
  url: https://roxygen2.r-lib.org/
  repository: https://CRAN.R-project.org/package=roxygen2
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: Danenberg
    given-names: Peter
    email: pcd@roxygen.org
  - family-names: Csárdi
    given-names: Gábor
    email: csardi.gabor@gmail.com
  - family-names: Eugster
    given-names: Manuel
  year: '2025'
  doi: 10.32614/CRAN.package.roxygen2
- type: software
  title: rstan
  abstract: 'rstan: R Interface to Stan'
  notes: Suggests
  url: https://mc-stan.org/rstan/
  repository: https://CRAN.R-project.org/package=rstan
  authors:
  - family-names: Guo
    given-names: Jiqiang
    email: guojq28@gmail.com
  - family-names: Gabry
    given-names: Jonah
    email: jsg2201@columbia.edu
  - family-names: Goodrich
    given-names: Ben
    email: benjamin.goodrich@columbia.edu
  - family-names: Johnson
    given-names: Andrew
    email: andrew.johnson@arjohnsonau.com
  - family-names: Weber
    given-names: Sebastian
    email: sdw.post@waebers.de
  - family-names: Badr
    given-names: Hamada S.
    email: badr@jhu.edu
    orcid: https://orcid.org/0000-0002-9808-2344
  year: '2025'
  doi: 10.32614/CRAN.package.rstan
- type: software
  title: spelling
  abstract: 'spelling: Tools for Spell Checking in R'
  notes: Suggests
  url: https://ropensci.r-universe.dev/spelling
  repository: https://CRAN.R-project.org/package=spelling
  authors:
  - family-names: Ooms
    given-names: Jeroen
    email: jeroenooms@gmail.com
    orcid: https://orcid.org/0000-0002-4035-0289
  - family-names: Hester
    given-names: Jim
    email: james.hester@rstudio.com
  year: '2025'
  doi: 10.32614/CRAN.package.spelling
- type: software
  title: testthat
  abstract: 'testthat: Unit Testing for R'
  notes: Suggests
  url: https://testthat.r-lib.org
  repository: https://CRAN.R-project.org/package=testthat
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2025'
  doi: 10.32614/CRAN.package.testthat
- type: software
  title: workflows
  abstract: 'workflows: Modeling Workflows'
  notes: Suggests
  url: https://workflows.tidymodels.org
  repository: https://CRAN.R-project.org/package=workflows
  authors:
  - family-names: Vaughan
    given-names: Davis
    email: davis@posit.co
  - family-names: Couch
    given-names: Simon
    email: simon.couch@posit.co
    orcid: https://orcid.org/0000-0001-5676-5107
  - family-names: Frick
    given-names: Hannah
    email: hannah@posit.co
    orcid: https://orcid.org/0000-0002-6049-5258
  year: '2025'
  doi: 10.32614/CRAN.package.workflows

GitHub Events

Total

Watch event: 4
Push event: 33

Last Year

Watch event: 4
Push event: 33

Committers

Last synced: 9 months ago

All Time

Total Commits: 385
Total Committers: 4
Avg Commits per committer: 96.25
Development Distribution Score (DDS): 0.029

Past Year

Commits: 39
Committers: 1
Avg Commits per committer: 39.0
Development Distribution Score (DDS): 0.0

Top Committers

Name	Email	Commits
Hamada S. Badr	h**r@g**m	374
Paul Buerkner	p**r@g**m	7
GitHub Actions	a**s@g**m	3
topepo	m**n@g**m	1

Committer Domains (Top 20 + Academic)

github.com: 1

Issues and Pull Requests

Last synced: 9 months ago

All Time

Total issues: 16
Total pull requests: 2
Average time to close issues: 13 days
Average time to close pull requests: about 10 hours
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Average comments per issue: 2.56
Average comments per pull request: 5.5
Merged pull requests: 2
Bot issues: 0
Bot pull requests: 0

Past Year

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Pull requests: 0
Average time to close issues: N/A
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Bot issues: 0
Bot pull requests: 0

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michaelgaunt404 (1)
davidkane9 (1)
JamesHWade (1)
bnicenboim (1)
mdancho84 (1)
tonyelhabr (1)

Pull Request Authors

paul-buerkner (1)
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Top Labels

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enhancement (2) good first issue (1) documentation (1)

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Total packages: 1
Total downloads:
- cran 691 last-month
Total docker downloads: 41,971

Total dependent packages: 0
Total dependent repositories: 0
Total versions: 9
Total maintainers: 1

cran.r-project.org: bayesian

Bindings for Bayesian TidyModels

Homepage: https://hsbadr.github.io/bayesian/
Documentation: http://cran.r-project.org/web/packages/bayesian/bayesian.pdf
License: MIT + file LICENSE
Latest release: 1.0.1
published almost 2 years ago

Versions: 9
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 691 Last month
Docker Downloads: 41,971

Rankings

Stargazers count: 8.5%

Forks count: 14.9%

Average: 22.3%

Downloads: 22.7%

Dependent packages count: 29.8%

Dependent repos count: 35.5%

Maintainers (1)

badr@jhu.edu

Last synced: 6 months ago

Dependencies

DESCRIPTION cran

R >= 4.1.0 depends
brms >= 2.17.0 depends
parsnip >= 1.0.0 depends
dplyr * imports
purrr * imports
rlang * imports
stats * imports
tibble * imports
utils * imports
covr * suggests
devtools * suggests
future * suggests
knitr * suggests
recipes * suggests
rmarkdown * suggests
roxygen2 * suggests
rstan * suggests
spelling * suggests
testthat * suggests
workflows * suggests

.github/workflows/R.yml actions

JamesIves/github-pages-deploy-action v4 composite
actions/checkout v3 composite
actions/create-release v1 composite
actions/download-artifact v2 composite
actions/download-artifact v3 composite
actions/upload-artifact v3 composite
actions/upload-release-asset v1 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/pr-fetch v2 composite
r-lib/actions/pr-push v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite
r-lib/actions/setup-tinytex v2 composite

ecosyste.ms

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Open Source Science

bayesian

Science Score: 67.0%

Keywords

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README.Rmd

Owner

Citation (CITATION.cff)

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