yt_astro_analysis

yt astrophysical analysis modules

https://github.com/yt-project/yt_astro_analysis

Science Score: 77.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
✓
DOI references
Found 3 DOI reference(s) in README
✓
Academic publication links
Links to: zenodo.org
✓
Committers with academic emails
6 of 33 committers (18.2%) from academic institutions
○
Institutional organization owner
○
JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (15.5%) to scientific vocabulary

Keywords

analysis astronomy astrophysics data-visualization python scientific-computing scientific-visualization

Keywords from Contributors

regionalization gtk qt tk wx mcmc mesh closember hydrology yapf

Last synced: 6 months ago · JSON representation ·

Repository

yt astrophysical analysis modules

Basic Info

Host: GitHub
Owner: yt-project
License: other
Language: Python
Default Branch: main
Homepage:
Size: 9.01 MB

Statistics

Stars: 24
Watchers: 8
Forks: 21
Open Issues: 20
Releases: 5

Topics

analysis astronomy astrophysics data-visualization python scientific-computing scientific-visualization

Created almost 9 years ago · Last pushed 8 months ago

Metadata Files

Readme Contributing License Citation

The yt Astro Analysis Extension

This is ytastroanalysis, the yt extension package for astrophysical analysis. This package contains functionality for:

Halo finding and analysis
Lightcones
Planning cosmological simulations for making lightcones and lightrays
Exporting to the RADMC-3D radiation transport code
Creating PPV FITS cubes

This is primarily machinery that used to be in yt's analysis_modules. These were made into a separate package to allow yt to become less astro-specifc and to allow these modules to be developed on their own schedule.

Installation

Full installation documentation can also be found here.

Stable

Get the latest release via pip as shell python -m pip install yt-astro-analysis

Or with conda, as shell conda install -c conda-forge yt-astro-analysis

Note, the package name is spelled with hyphens (yt-astro-analysis) when installing from pip or conda. With pip, the package name can be spelled with either hyphens or underscores, but with conda it must always be hyphens.

From source

To build yt_astro_analysis from source, clone the git repository and install as

shell git clone https://github.com/yt-project/yt_astro_analysis cd yt_astro_analysis python -m pip install -e .

Installing with Rockstar support

In order to run the Rockstar halo finder from within ytastroanalysis, it is necessary to install ytastroanalysis from source. You will need to install rockstar-galaxies from either John Wise's repository or Peter Behroozi's repository. To install Rockstar, do the following:

git clone https://bitbucket.org/jwise77/rockstar-galaxies cd rockstar-galaxies make lib

Then, go into the ytastroanalysis source directory and add a file called "rockstar.cfg" with the path the Rockstar repo you just cloned. Then, install ytastroanalysis.

cd yt_astro_analysis echo <path_to_rockstar> > rockstar.cfg python -m pip install -e .

Finally, you'll need to make sure that the location of librockstar-galaxies.so is in your LDLIBRARYPATH.

export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:<path_to_rockstar>

Importing from ytastroanalysis

For every module that was moved from yt's analysismodules to ytastroanalysis, all imports can be changed simply by substituting ``yt.analysismoduleswithyt.extensions.astro_analysis``. For example, the following

python from yt.analysis_modules.ppv_cube.api import PPVCube becomes python from yt.extensions.astro_analysis.ppv_cube.api import PPVCube

Contributing

We really want your contributions! As an official yt-project extension, everything in the yt Contributor Guide applies here.

If you'd rather make your own standalone package, we want to support that, too! Please, consider making your package a yt extension.

Resources

As an extension of the yt-project, the yt resources are available for help.

The latest documentation can be found at https://yt-astro-analysis.readthedocs.io/

Owner

Name: The yt project
Login: yt-project
Kind: organization
Email: yt-users@python.org

Website: http://yt-project.org/
Repositories: 43
Profile: https://github.com/yt-project

A toolkit for analysis and visualization of volumetric data

Citation (CITATION.rst)

Citing yt_astro_analysis
========================

If you use the yt_astro_analysis package for your work, please cite the
`yt_astro_analysis <https://zenodo.org/record/1458961#.W8ZcVXFKht8>`__
entry on `zenodo.org <https://zenodo.org/>`_ as well as the
`yt method paper <http://adsabs.harvard.edu/abs/2011ApJS..192....9T>`__.
Feel free to use the text below in your publications:

::

  Analysis was performed using the yt_astro_analysis extension
  (Smith et al. 2022) of the yt analysis toolkit (Turk et al. 2011).

  Analysis was performed using the yt_astro_analysis extension
  \citep{yt.astro.analysis} of the yt analysis toolkit \citep{yt}.

BbTeX entries are provided below:

::

  @misc{yt.astro.analysis,
    author       = {Britton Smith and
                    Matthew Turk and
                    John ZuHone and
                    Nathan Goldbaum and
                    Cameron Hummels and
                    Hilary Egan and
                    John Wise and
                    Anthony Scopatz and
                    Miguel de Val-Borro and
                    Ben Keller and
                    Mark Richardson and
                    Clément Robert},
    title        = {yt_astro_analysis version 1.1.2},
    month        = jan,
    year         = 2022,
    doi          = {10.5281/zenodo.5911048},
    url          = {https://doi.org/10.5281/zenodo.5911048}
  }

  @ARTICLE{yt,
     author = {{Turk}, M.~J. and {Smith}, B.~D. and {Oishi}, J.~S. and {Skory}, S. and
  {Skillman}, S.~W. and {Abel}, T. and {Norman}, M.~L.},
      title = "{yt: A Multi-code Analysis Toolkit for Astrophysical Simulation Data}",
    journal = {The Astrophysical Journal Supplement Series},
  archivePrefix = "arXiv",
     eprint = {1011.3514},
   primaryClass = "astro-ph.IM",
   keywords = {cosmology: theory, methods: data analysis, methods: numerical},
       year = 2011,
      month = jan,
     volume = 192,
        eid = {9},
      pages = {9},
        doi = {10.1088/0067-0049/192/1/9},
     adsurl = {http://adsabs.harvard.edu/abs/2011ApJS..192....9T},
    adsnote = {Provided by the SAO/NASA Astrophysics Data System}
  }

GitHub Events

Total

Issues event: 3
Watch event: 1
Delete event: 7
Issue comment event: 6
Push event: 12
Pull request review event: 1
Pull request review comment event: 1
Pull request event: 12
Create event: 6

Last Year

Issues event: 3
Watch event: 1
Delete event: 7
Issue comment event: 6
Push event: 12
Pull request review event: 1
Pull request review comment event: 1
Pull request event: 12
Create event: 6

Committers

Last synced: 9 months ago

All Time

Total Commits: 1,366
Total Committers: 33
Avg Commits per committer: 41.394
Development Distribution Score (DDS): 0.643

Past Year

Commits: 17
Committers: 4
Avg Commits per committer: 4.25
Development Distribution Score (DDS): 0.529

Top Committers

Name	Email	Commits
Britton Smith	b**h@g**m	487
Matthew Turk	m**k@g**m	141
John ZuHone	j**e@g**m	139
Nathan Goldbaum	n**u@i**u	92
Clément Robert	c**2@p**m	92
Stephen Skory	s@s****s	76
pre-commit-ci[bot]	6****]	49
Cameron Hummels	c**s@g**m	35
Andrew Myers	a**2@g**m	35
Hilary Egan	h**e@g**m	32
Christopher Moody	c**y@u**u	28
Kacper Kowalik	x**k@g**m	27
dependabot[bot]	4****]	23
Corentin Cadiou	c**u@i**r	21
Sam Skillman	s**n@g**m	19
Mike Warren	m**n@g**m	11
John Wise	j**e@p**u	9
Joshua Moloney	j**y@c**u	8
Douglas Rudd	d**d@u**u	7
Geoffrey So	g**g@g**m	6
Pengfei Chen	m**f@g**m	4
Sam Leitner	s**r@g**m	4
convert-repo	n**e@n**e	4
Miguel de Val-Borro	m**l@g**m	3
Anthony Scopatz	s**z@g**m	3
Michael Kuhlen	m**k@a**u	2
willsonho2000	7****0	2
Casey W. Stark	c**k@g**m	2
Mark Richardson	M**k@g**m	1
Matthew Krafczyk	k**w@g**m	1
and 3 more...

Committer Domains (Top 20 + Academic)

astro.berkeley.edu: 1 uchicago.edu: 1 colorado.edu: 1 physics.gatech.edu: 1 iap.fr: 1 ucsc.edu: 1 skory.us: 1 illinois.edu: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 23
Total pull requests: 149
Average time to close issues: 6 months
Average time to close pull requests: 6 days
Total issue authors: 9
Total pull request authors: 9
Average comments per issue: 2.57
Average comments per pull request: 0.83
Merged pull requests: 129
Bot issues: 0
Bot pull requests: 66

Past Year

Issues: 3
Pull requests: 13
Average time to close issues: N/A
Average time to close pull requests: 21 days
Issue authors: 3
Pull request authors: 3
Average comments per issue: 0.0
Average comments per pull request: 0.46
Merged pull requests: 7
Bot issues: 0
Bot pull requests: 11

View more stats

Top Authors

Issue Authors

neutrinoceros (10)
brittonsmith (4)
osokoliuk (1)
cphyc (1)
Anirban-096 (1)
mabruzzo (1)
Redemption007 (1)
Ecskrabacz10 (1)
chummels (1)

Pull Request Authors

neutrinoceros (60)
pre-commit-ci[bot] (42)
dependabot[bot] (38)
brittonsmith (15)
cphyc (10)
jzuhone (1)
spectram (1)
matthewturk (1)
mtryan83 (1)

Top Labels

Issue Labels

bug (7) documentation (5) infrastructure (1) enhancement (1)

Pull Request Labels

dependencies (39) github_actions (23) bug (11) infrastructure (6) documentation (5) enhancement (2)

Packages

Total packages: 3
Total downloads:
- pypi 616 last-month

Total dependent packages: 0
(may contain duplicates)
Total dependent repositories: 1
(may contain duplicates)
Total versions: 8
Total maintainers: 3

pypi.org: yt-astro-analysis

yt astrophysical analysis modules extension

Homepage: https://yt-project.org/
Documentation: https://yt-astro-analysis.readthedocs.io/
License: BSD 3-Clause
Latest release: 1.1.3
published over 2 years ago

Versions: 5
Dependent Packages: 0
Dependent Repositories: 1
Downloads: 616 Last month

Rankings

Forks count: 8.2%

Dependent packages count: 10.1%

Stargazers count: 13.7%

Average: 13.8%

Downloads: 15.4%

Dependent repos count: 21.6%

Maintainers (3)

cphyc brittonsmith mturk

Last synced: 6 months ago

conda-forge.org: yt-astro-analysis

Homepage: https://github.com/yt-project/yt_astro_analysis
License: BSD-3-Clause
Latest release: 1.1.1
published about 4 years ago

Versions: 2
Dependent Packages: 0
Dependent Repositories: 0

Rankings

Dependent repos count: 34.0%

Forks count: 36.1%

Average: 41.9%

Stargazers count: 46.3%

Dependent packages count: 51.2%

Last synced: 6 months ago

conda-forge.org: yt_astro_analysis

Homepage: http://yt-project.org/
License: BSD 3-clause
Latest release: 1.0.0
published over 7 years ago

Versions: 1
Dependent Packages: 0
Dependent Repositories: 0

Rankings

Dependent repos count: 34.0%

Forks count: 36.1%

Average: 41.9%

Stargazers count: 46.3%

Dependent packages count: 51.2%

Last synced: 6 months ago

Dependencies

.github/workflows/wheels.yaml actions

actions/checkout v2 composite
actions/download-artifact v2 composite
actions/upload-artifact v2 composite
pypa/cibuildwheel v2.11.4 composite
pypa/gh-action-pypi-publish v1.4.2 composite

pyproject.toml pypi

h5py >=3.1.0
yt >=4.0.1

setup.py pypi

requirements/docs.txt pypi

jinja2 ==3.1.2
markupsafe ==2.1.3
sphinx ==7.2.6
sphinx-bootstrap-theme ==0.8.1

requirements/tests.txt pypi

astropy * test
codecov * test
girder-client * test
nose * test
nose-timer * test
pytest * test
scipy * test

yt_astro_analysis

Science Score: 77.0%

Keywords

Keywords from Contributors

Repository

Basic Info

Statistics

Topics

Metadata Files

README.md

The yt Astro Analysis Extension

Installation

Stable

From source

Installing with Rockstar support

Importing from ytastroanalysis

Contributing

Resources

Owner

Citation (CITATION.rst)

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Packages

pypi.org: yt-astro-analysis

Rankings

Maintainers (3)

conda-forge.org: yt-astro-analysis

Rankings

conda-forge.org: yt_astro_analysis

Rankings

Dependencies