yt_astro_analysis - yt_astro_analysis-1.1.3

What's Changed

• MNT: bump dev version by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/173
• MNT: bump github action versions by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/174
• TST: upgrade all Python versions in tests by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/176
• BLD: migrate metadata to pyproject.toml, and drop setup.cfg by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/175
• STY: upgrade pre-commit hooks, bump minimal version for pyupgrade and reduce auto-upgrade frequency by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/177
• BLD: drop dependency on moreitertools by @neutrinoceros in https://github.com/yt-project/ytastro_analysis/pull/178
• STY: upgrade black to 23.1.0 by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/179
• TST: ensure test dependencies are correctly installed in CI by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/184
• MNT: enable dependabot autoupdates for GitHub workflows by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/181
• STY: migrate linting to ruff, add basic pre-commit hooks, cleanup .pre-commit-config.yaml by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/180
• Bump pypa/cibuildwheel from 2.11.4 to 2.12.0 in /.github/workflows by @dependabot in https://github.com/yt-project/ytastroanalysis/pull/185
• BUG: handle deprecation warning from numpy 1.25 (np.product is deprecated in favour of np.prod) by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/186
• MNT: upgrade pre-commit hooks, simplify ruff config, update blacken-docs url by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/188
• Bump pypa/gh-action-pypi-publish from 1.6.4 to 1.8.4 in /.github/workflows by @dependabot in https://github.com/yt-project/ytastroanalysis/pull/189
• Bump pypa/cibuildwheel from 2.12.0 to 2.12.1 in /.github/workflows by @dependabot in https://github.com/yt-project/ytastroanalysis/pull/190
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/yt-project/ytastroanalysis/pull/191
• Bump pypa/cibuildwheel from 2.12.1 to 2.12.3 in /.github/workflows by @dependabot in https://github.com/yt-project/ytastroanalysis/pull/192
• Bump pypa/gh-action-pypi-publish from 1.8.4 to 1.8.5 in /.github/workflows by @dependabot in https://github.com/yt-project/ytastroanalysis/pull/193
• DOC: migrate away from configuration key format deprecated in Sphinx 7.0 by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/195
• STY: activate flake8-comprehensions (ruff) by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/196
• Bump pypa/gh-action-pypi-publish from 1.8.5 to 1.8.6 in /.github/workflows by @dependabot in https://github.com/yt-project/ytastroanalysis/pull/197
• Bump pypa/cibuildwheel from 2.12.3 to 2.13.0 in /.github/workflows by @dependabot in https://github.com/yt-project/ytastroanalysis/pull/198
• TST: treat warnings as errors by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/201
• Bump pypa/cibuildwheel from 2.13.0 to 2.13.1 in /.github/workflows by @dependabot in https://github.com/yt-project/ytastroanalysis/pull/202
• Bump pypa/gh-action-pypi-publish from 1.8.6 to 1.8.7 in /.github/workflows by @dependabot in https://github.com/yt-project/ytastroanalysis/pull/203
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/yt-project/ytastroanalysis/pull/204
• DEP: set upper limit to runtime numpy by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/205
• MNT: avoid usage of deprecated unyt API by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/207
• DOC: fix RadMC3DWriter's docstring (compat with modern yt) by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/206
• MNT: cleanup unused variables by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/212
• MNT: cleanup free of uninitialized variable by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/213
• Bump pypa/gh-action-pypi-publish from 1.8.7 to 1.8.8 in /.github/workflows by @dependabot in https://github.com/yt-project/ytastroanalysis/pull/214
• Bump pypa/cibuildwheel from 2.13.1 to 2.14.1 in /.github/workflows by @dependabot in https://github.com/yt-project/ytastroanalysis/pull/215
• BLD: stop building wheels for Windows 32 by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/217
• BLD: switch to Cython 3.0, forbid deprecated Numpy C API in generated code by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/211
• BLD: add wheels for CPython 3.12 by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/216
• BLD: migrate from oldest-supported-numpy to NPYTARGETVERSION (Python >= 3.9) by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/218
• Bump pypa/gh-action-pypi-publish from 1.8.8 to 1.8.10 in /.github/workflows by @dependabot in https://github.com/yt-project/ytastroanalysis/pull/220
• Support installation of rockstar through conda by @cphyc in https://github.com/yt-project/ytastroanalysis/pull/219
• DEP: drop support for CPython 3.8 by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/222
• Bump actions/checkout from 3 to 4 in /.github/workflows by @dependabot in https://github.com/yt-project/ytastroanalysis/pull/223
• BUG: fix usage of deprecated (and removed) clobber argument from astropy by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/226
• Updated ppvcube.py to avoid deprecated function 'updateallheaders' by @spectram in https://github.com/yt-project/ytastro_analysis/pull/225
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/yt-project/ytastroanalysis/pull/230
• Bump pypa/cibuildwheel from 2.15.0 to 2.16.2 in /.github/workflows by @dependabot in https://github.com/yt-project/ytastroanalysis/pull/231
• BUG: fix a couple bugs in PPVCube notebook by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/228
• DOC: pin doc requirements by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/235
• DOC: upgrade sphinx to latest version and enable automated upgrades for doc dependencies by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/237
• REL: prep release 1.1.3 by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/239

New Contributors

• @dependabot made their first contribution in https://github.com/yt-project/ytastroanalysis/pull/185
• @spectram made their first contribution in https://github.com/yt-project/ytastroanalysis/pull/225

Full Changelog: https://github.com/yt-project/ytastroanalysis/compare/ytastroanalysis-1.1.2...ytastroanalysis-1.1.3

- Python
Published by neutrinoceros over 2 years ago

yt_astro_analysis - yt_astro_analysis-1.1.2

This is a bugfix release with no new features. We fixed compatibility with numpy 1.24 and Python 3.11 This release supports CPython 3.8 to 3.11

What's Changed

• Update version and citation. by @brittonsmith in https://github.com/yt-project/ytastroanalysis/pull/136
• Update package name for conda/pip installation. by @brittonsmith in https://github.com/yt-project/ytastroanalysis/pull/138
• TST: hotfix CI (workaround upstream change of behaviour) by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/145
• Increase timeout on data download. by @brittonsmith in https://github.com/yt-project/ytastroanalysis/pull/147
• BLD: drop support for CPython 3.7 by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/157
• MNT: cleanup unused and outdated requirements file by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/164
• BUG: fix compatibility with numpy 1.24 (numpy.float was removed) by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/169
• BLD: switch ubuntu image to 20.04 (18.04 image is deprecated) by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/167
• BLD: build wheels for Python 3.11 by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/170
• TST: test on Python 3.11 by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/163
• REL: prep release 1.1.2 by @neutrinoceros in https://github.com/yt-project/ytastroanalysis/pull/172

Full Changelog: https://github.com/yt-project/ytastroanalysis/compare/ytastroanalysis-1.1.1...ytastroanalysis-1.1.2

- Python
Published by neutrinoceros over 3 years ago

yt_astro_analysis - yt_astro_analysis version 1.1.1 is released!

ytastroanalysis is a yt extension package for astrophysical analysis. This package contains functionality for: * Halo finding and analysis * Lightcones * Planning cosmological simulations for making lightcones and lightrays * Exporting to the RADMC-3D radiation transport code * Creating PPV FITS cubes

This is a bugfix release; no new features have been added.

Bugfixes

• Make sure to initialize index before checking particle types https://github.com/yt-project/ytastroanalysis/pull/127
• Fix broken example with halo plotting https://github.com/yt-project/ytastroanalysis/pull/132
• Make total particles a 64 bit integer https://github.com/yt-project/ytastroanalysis/pull/133
• Set output directory properly for rockstar halo finder https://github.com/yt-project/ytastroanalysis/pull/134

Full Changelog: https://github.com/yt-project/ytastroanalysis/compare/ytastroanalysis-1.1.0...ytastroanalysis-1.1.1

- Python
Published by brittonsmith over 4 years ago

yt_astro_analysis - yt_astro_analysis-1.1.0

ytastroanalysis version 1.1 is released!

ytastroanalysis is an extension of yt for astrophysical analysis. This is the first stable release of ytastroanalysis to be compatible with yt version 4.0 and later.

New Features

• The HaloCatalog has been significantly refactored (https://github.com/yt-project/ytastroanalysis/pull/58, https://github.com/yt-project/ytastroanalysis/pull/62) with the following additional improvements:
  • the interface to the Rockstar halo finder is now compatible with the latest version of Rockstar Galaxies https://github.com/yt-project/ytastroanalysis/pull/55
  • all halo finders now support being run with time-series of datasets
  • halo particle ids now savable with FoF and HOP halo finders https://github.com/yt-project/ytastroanalysis/pull/52
  • looping over halos is done with io chunks instead of ds.all_data for a significant speedup and reduction in memory
  • Allow more flexibility for specifying rockstar particle mass https://github.com/yt-project/ytastroanalysis/pull/84
  • Add restart option for rockstar https://github.com/yt-project/ytastroanalysis/pull/82
  • Adding an outerradius parameter to the iterative COM callback https://github.com/yt-project/ytastro_analysis/pull/34
• Remove the sunyaevzeldovich analysis module. This is now ytsz. https://github.com/yt-project/ytastro_analysis/pull/79
• Drop support for python 3.6 https://github.com/yt-project/ytastroanalysis/pull/100, https://github.com/yt-project/ytastroanalysis/pull/101

Minor Enhancements and Bugfixes

• significant project management and ci improvements https://github.com/yt-project/ytastroanalysis/pull/89, https://github.com/yt-project/ytastroanalysis/pull/90, https://github.com/yt-project/ytastroanalysis/pull/91, https://github.com/yt-project/ytastroanalysis/pull/92, https://github.com/yt-project/ytastroanalysis/pull/96, https://github.com/yt-project/ytastroanalysis/pull/95, https://github.com/yt-project/ytastroanalysis/pull/97, https://github.com/yt-project/ytastroanalysis/pull/108, https://github.com/yt-project/ytastroanalysis/pull/109
• Add annotatehalos function https://github.com/yt-project/ytastro_analysis/pull/98
• only access particletype field in rockstar if it exists and is needed https://github.com/yt-project/ytastro_analysis/pull/111
• fix light cone projections with weight fields https://github.com/yt-project/ytastroanalysis/pull/37
• Fix HaloCatalog progress bar https://github.com/yt-project/ytastroanalysis/pull/40
• clarify rockstar error message about using the wrong number of MPI processes https://github.com/yt-project/ytastroanalysis/pull/42, https://github.com/yt-project/ytastroanalysis/pull/113
• check derivedfieldlist for base fields https://github.com/yt-project/ytastroanalysis/pull/43
• allow cosmology splice from a single dataset https://github.com/yt-project/ytastroanalysis/pull/49
• Fix iterator https://github.com/yt-project/ytastroanalysis/pull/68
• Support new config file format https://github.com/yt-project/ytastroanalysis/pull/65
• Enable circleci testing https://github.com/yt-project/ytastroanalysis/pull/44
• Add maxboxfraction to plancosmologysplice https://github.com/yt-project/ytastroanalysis/pull/76
• Fix HaloCatalog outputdir https://github.com/yt-project/ytastro_analysis/pull/81
• remove deprecated dmonly keyword from halo finder https://github.com/yt-project/ytastro_analysis/pull/57
• update amrgrid.inp https://github.com/yt-project/ytastro_analysis/pull/77

New Contributors

• Corentin Cadiou (@cphyc)
• Nathan Goldbaum (@ngoldbaum)
• Meng Yuan Ho (@willsonho2000)
• Cameron Hummels (@chummels)
• Clément Robert (@neutrinoceros)

Full Changelog: https://github.com/yt-project/ytastroanalysis/compare/ytastroanalysis-1.0.0...ytastroanalysis-1.1.0

- Python
Published by brittonsmith over 4 years ago

yt_astro_analysis - yt_astro_analysis 1.0 Release

ytastroanalysis version 1.0 is released!

ytastroanalysis is an extension of yt for astrophysical analysis. ytastroanalysis is the new home of yt's analysis_modules. The 1.0 release of ytastroanalysis is functionally identical to the code in analysis_modules in yt version 3.5.0. After the 3.5 release of yt, analysis_modules was removed and all development transitioned to ytastroanalysis.

ytastroanalysis version 1.0 includes:

• Halo finding
• Halo analysis (the HaloCatalog)
• LightCones and CosmologySplices
• RADMC-3D exporting

- Python
Published by brittonsmith over 7 years ago