wikitaxa

taxonomy data from Wikipedia/Wikidata/Wikispecies

https://github.com/ropensci/wikitaxa

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

○
CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
○
DOI references
○
Academic publication links
○
Committers with academic emails
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (13.5%) to scientific vocabulary

Keywords

r r-package rstats taxize taxonomy wikipedia-api wikispecies

Keywords from Contributors

genome

Last synced: 9 months ago · JSON representation

Repository

taxonomy data from Wikipedia/Wikidata/Wikispecies

Basic Info

Host: GitHub
Owner: ropensci
License: other
Language: R
Default Branch: master
Homepage: https://docs.ropensci.org/wikitaxa
Size: 2.48 MB

Statistics

Stars: 21
Watchers: 3
Forks: 4
Open Issues: 0
Releases: 5

Topics

r r-package rstats taxize taxonomy wikipedia-api wikispecies

Created almost 10 years ago · Last pushed 10 months ago

Metadata Files

Readme Changelog Contributing License Code of conduct Codemeta

README.Rmd

wikitaxa
========

```{r echo=FALSE}
knitr::opts_chunk$set(
  warning = FALSE,
  message = FALSE,
  collapse = TRUE,
  comment = "#>"
)
```

[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
[![cran checks](https://badges.cranchecks.info/worst/wikitaxa.svg)](https://cloud.r-project.org/web/checks/check_results_wikitaxa.html)
[![R-check](https://github.com/ropensci/wikitaxa/workflows/R-check/badge.svg)](https://github.com/ropensci/wikitaxa/actions/)
[![codecov](https://codecov.io/gh/ropensci/wikitaxa/branch/master/graph/badge.svg)](https://codecov.io/gh/ropensci/wikitaxa)
[![rstudio mirror downloads](https://cranlogs.r-pkg.org/badges/wikitaxa)](https://github.com/metacran/cranlogs.app)
[![cran version](https://www.r-pkg.org/badges/version/wikitaxa)](https://cran.r-project.org/package=wikitaxa)

`wikitaxa` - taxonomy data from Wikipedia/Wikidata/Wikispecies

`wikitaxa` docs: https://docs.ropensci.org/wikitaxa/

See also the taxize book: https://books.ropensci.org/taxize/


### Low level API

The low level API is meant for power users and gives you more control,
but requires more knowledge.

* `wt_wiki_page()`
* `wt_wiki_page_parse()`
* `wt_wiki_url_build()`
* `wt_wiki_url_parse()`
* `wt_wikispecies_parse()`
* `wt_wikicommons_parse()`
* `wt_wikipedia_parse()`

### High level API

The high level API is meant to be easier and faster to use.

* `wt_data()`
* `wt_data_id()`
* `wt_wikispecies()`
* `wt_wikicommons()`
* `wt_wikipedia()`

Search functions:

* `wt_wikicommons_search()`
* `wt_wikispecies_search()`
* `wt_wikipedia_search()`

## Installation

CRAN version

```{r eval=FALSE}
install.packages("wikitaxa")
```

Dev version

```{r eval=FALSE}
remotes::install_github("ropensci/wikitaxa")
```

```{r}
library('wikitaxa')
```

## Contributors

* [Ethan Welty](https://github.com/ezwelty)
* [Scott Chamberlain](https://github.com/sckott)

## Meta

* Please [report any issues or bugs](https://github.com/ropensci/wikitaxa/issues).
* License: MIT
* Get citation information for `wikitaxa` in R doing `citation(package = 'wikitaxa')`
* Please note that this project is released with a [Contributor Code of Conduct][coc]. By participating in this project you agree to abide by its terms.

[![ropensci](https://ropensci.org/public_images/github_footer.png)](https://ropensci.org)

[coc]: https://github.com/ropensci/wikitaxa/blob/master/CODE_OF_CONDUCT.md

Owner

Name: rOpenSci
Login: ropensci
Kind: organization
Email: info@ropensci.org
Location: Berkeley, CA

Website: https://ropensci.org/
Twitter: rOpenSci
Repositories: 307
Profile: https://github.com/ropensci

CodeMeta (codemeta.json)

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  "@type": "SoftwareSourceCode",
  "identifier": "wikitaxa",
  "description": "'Taxonomic' information from 'Wikipedia', 'Wikicommons', 'Wikispecies', and 'Wikidata'. Functions included for getting taxonomic information from each of the sources just listed, as well performing taxonomic search.",
  "name": "wikitaxa: Taxonomic Information from 'Wikipedia'",
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      "familyName": "Chamberlain",
      "email": "myrmecocystus+r@gmail.com"
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}

GitHub Events

Total

Issues event: 2
Watch event: 1
Issue comment event: 1
Push event: 1
Pull request review event: 1

Last Year

Issues event: 2
Watch event: 1
Issue comment event: 1
Push event: 1
Pull request review event: 1

Committers

Last synced: 10 months ago

All Time

Total Commits: 126
Total Committers: 5
Avg Commits per committer: 25.2
Development Distribution Score (DDS): 0.071

Past Year

Commits: 5
Committers: 2
Avg Commits per committer: 2.5
Development Distribution Score (DDS): 0.4

Top Committers

Name	Email	Commits
Scott Chamberlain	m**s@g**m	117
ezwelty	e**y@g**m	5
gsapijaszko	g**z@s**t	2
Zachary S.L. Foster	z**9@g**m	1
rOpenSci Bot	m**t@g**m	1

Committer Domains (Top 20 + Academic)

sapijaszko.net: 1

Issues and Pull Requests

Last synced: 10 months ago

All Time

Total issues: 19
Total pull requests: 3
Average time to close issues: 3 months
Average time to close pull requests: 4 days
Total issue authors: 4
Total pull request authors: 3
Average comments per issue: 1.32
Average comments per pull request: 1.33
Merged pull requests: 3
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 1
Pull requests: 1
Average time to close issues: 17 days
Average time to close pull requests: 1 day
Issue authors: 1
Pull request authors: 1
Average comments per issue: 3.0
Average comments per pull request: 0.0
Merged pull requests: 1
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

sckott (17)
maelle (1)
vijaybarve (1)
amauryt (1)

Pull Request Authors

gsapijaszko (2)
ezwelty (1)
sckott (1)

Top Labels

Issue Labels

bug (4) help wanted (1) fix (1)

Pull Request Labels

Packages

Total packages: 2
Total downloads:
- cran 3,721 last-month
Total docker downloads: 200,493

Total dependent packages: 3
(may contain duplicates)
Total dependent repositories: 5
(may contain duplicates)
Total versions: 8
Total maintainers: 1

cran.r-project.org: wikitaxa

Taxonomic Information from 'Wikipedia'

Homepage: https://docs.ropensci.org/wikitaxa
Documentation: http://cran.r-project.org/web/packages/wikitaxa/wikitaxa.pdf
License: MIT + file LICENSE
Latest release: 0.4.0
published almost 6 years ago

Versions: 5
Dependent Packages: 2
Dependent Repositories: 5
Downloads: 3,721 Last month
Docker Downloads: 200,493

Rankings

Downloads: 6.8%

Stargazers count: 11.9%

Average: 11.9%

Forks count: 12.3%

Dependent repos count: 13.2%

Dependent packages count: 13.2%

Docker downloads count: 14.1%

Maintainers (1)

myrmecocystus+r@gmail.com

Last synced: 10 months ago

conda-forge.org: r-wikitaxa

Homepage: https://github.com/ropensci/wikitaxa
License: MIT
Latest release: 0.4.0
published almost 6 years ago

Versions: 3
Dependent Packages: 1
Dependent Repositories: 0

Rankings

Dependent packages count: 28.8%

Dependent repos count: 34.0%

Average: 40.3%

Stargazers count: 46.8%

Forks count: 51.6%

Last synced: 10 months ago

Dependencies

DESCRIPTION cran

R >= 3.2.1 depends
WikidataR * imports
crul >= 0.3.4 imports
curl * imports
data.table * imports
jsonlite * imports
tibble * imports
xml2 * imports
knitr * suggests
rmarkdown * suggests
testthat * suggests
vcr * suggests

.github/workflows/R-check.yaml actions

actions/checkout v2 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite