Data

Tools

Indexes

Applications

Experiments

Open Source Science

admtools

Estimate Age-Depth Models and Transform Data

https://github.com/mindthegap-erc/admtools

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 10 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.8%) to scientific vocabulary

Keywords

age-depth-model geochronology sedimentology stratigraphy
Last synced: 6 months ago · JSON representation ·

Repository

Estimate Age-Depth Models and Transform Data

Basic Info
Statistics
  • Stars: 4
  • Watchers: 2
  • Forks: 0
  • Open Issues: 5
  • Releases: 8
Topics
age-depth-model geochronology sedimentology stratigraphy
Created about 3 years ago · Last pushed 10 months ago
Metadata Files
Readme Changelog Contributing License Citation

README.md

admtools

R package to estimate age-depth models from stratigraphic and sedimentological data, and transform complex data between the time and stratigraphic domain.

R-CMD-check fair-software.eu DOI <!-- badges: end -->

Authors

Niklas Hohmann
Utrecht University
email: n.h.hohmann [at] uu.nl
Web page: uu.nl/staff/NHohmann
Orcid: 0000-0003-1559-1838

Installation

You can install the package from CRAN. For this, run

R install.packages("admtools")

in R. To install the package from GitHub, first install the remotes package

R install.packages("remotes")

Then, run

R remotes::install_github(repo = "MindTheGap-ERC/admtools", build_vignettes = TRUE, ref = "HEAD", dependencies = TRUE)

To install the latest stable version. To install the version under development, use

R remotes::install_github(repo = "MindTheGap-ERC/admtools", build_vignettes = TRUE, ref = "dev", dependencies = TRUE)

After installation, you can load the package using

R library("admtools")

To get started, have a look at the available vignettes via

```R browseVignettes(package = "admtools") # opens in Browser

or

vignette(package = "admtools") ```

A good place to start reading is the introductory vignette, available via

R vignette("admtools")

License

GPL-3.0, see LICENSE file for license text.

Copyright

Copyright 2023 Netherlands eScience Center and Utrecht University

Contribution

For contribution guidelines see the CONTRIBUTING.md file

Citation

To cite the package, use

  • Hohmann, N. (2025). admtools (v0.6.0). Zenodo. https://doi.org/10.5281/zenodo.15479049

or run

R citation("admtools")

in R. Alternatively, you can use the information in the CITATION.cff file, or generate it using the "cite this repository" button on GitHub.

References

This package uses data from

  • Hohmann, Niklas; Koelewijn, Joël R.; Burgess, Peter; Jarochowska, Emilia. 2024. "Identification of the mode of evolution in incomplete carbonate successions." BMC Ecology and Evolution, 24, 113. DOI: 10.1186/s12862-024-02287-2.

  • Hohmann, Niklas, Koelewijn, Joël R.; Burgess, Peter; Jarochowska, Emilia. 2023. "Identification of the Mode of Evolution in Incomplete Carbonate Successions - Supporting Data." Open Science Framework. https://doi.org/10.17605/OSF.IO/ZBPWA, published under the CC-BY 4.0 license.

Funding information

The authors acknowledge the contribution of the CycloNet project, funded by the Research Foundation Flanders (FWO, grant no. W000522N)

Funded by the European Union (ERC, MindTheGap, StG project no 101041077). Views and opinions expressed are however those of the author(s) only and do not necessarily reflect those of the European Union or the European Research Council. Neither the European Union nor the granting authority can be held responsible for them. European Union and European Research Council logos

Owner

  • Name: MindTheGap-ERC
  • Login: MindTheGap-ERC
  • Kind: organization

Citation (CITATION.cff) 

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: admtools
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - given-names: Niklas
    family-names: Hohmann
    email: N.H.Hohmann@uu.nl
    orcid: 'https://orcid.org/0000-0003-1559-1838'
    affiliation: Utrecht University
identifiers:
  - type: doi
    value: 10.5281/zenodo.15479049
    description: Archived version on Zenodo
repository-code: 'https://github.com/MindTheGap-ERC/admtools'
url: 'https://mindthegap-erc.github.io/admtools/'
abstract: >-
  R package to estimate age-depth models and transform data
  between the time domain and the stratigraphic domain. 
keywords:
  - Geochronology
  - Age-depth modeling
  - Stratigraphy
  - Sedimentology
license: GPL-3.0
version: 0.6.0
date-released: '2025-05-20'

GitHub Events

Total
  • Create event: 4
  • Release event: 1
  • Issues event: 6
  • Delete event: 3
  • Push event: 21
  • Pull request event: 8
Last Year
  • Create event: 4
  • Release event: 1
  • Issues event: 6
  • Delete event: 3
  • Push event: 21
  • Pull request event: 8

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 2
  • Total pull requests: 4
  • Average time to close issues: 3 months
  • Average time to close pull requests: 7 minutes
  • Total issue authors: 2
  • Total pull request authors: 1
  • Average comments per issue: 0.5
  • Average comments per pull request: 0.0
  • Merged pull requests: 3
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 2
  • Pull requests: 4
  • Average time to close issues: 3 months
  • Average time to close pull requests: 7 minutes
  • Issue authors: 2
  • Pull request authors: 1
  • Average comments per issue: 0.5
  • Average comments per pull request: 0.0
  • Merged pull requests: 3
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • NiklasHohmann (7)
  • EmiliaJarochowska (4)
Pull Request Authors
  • NiklasHohmann (31)
  • EmiliaJarochowska (3)
Top Labels
Issue Labels
bug (3) feature request (2) enhancement (2) documentation (1)
Pull Request Labels
bug (1)

Packages

  • Total packages: 1
  • Total downloads:
    • cran 702 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 8
  • Total maintainers: 1
cran.r-project.org: admtools

Estimate and Manipulate Age-Depth Models

  • Versions: 8
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 702 Last month
Rankings
Forks count: 27.8%
Dependent packages count: 28.7%
Stargazers count: 34.5%
Dependent repos count: 36.8%
Average: 42.8%
Downloads: 86.1%
Maintainers (1)
N.H.Hohmann@uu.nl
Last synced: 7 months ago

Dependencies

DESCRIPTION cran
  • R >= 2.10 depends
  • knitr * suggests
  • rmarkdown * suggests