bioregion

:package: An R package compiling all steps of a bioregionalization workflow

https://github.com/biorgeo/bioregion

Keywords

biogeography bioregion bioregionalization r r-package

Last synced: 6 months ago · JSON representation ·

Repository

:package: An R package compiling all steps of a bioregionalization workflow

Basic Info

Host: GitHub
Owner: bioRgeo
License: gpl-3.0
Language: R
Default Branch: master
Homepage: https://biorgeo.github.io/bioregion/
Size: 243 MB

Statistics

Stars: 8
Watchers: 4
Forks: 0
Open Issues: 0
Releases: 5

Topics

biogeography bioregion bioregionalization r r-package

Created almost 3 years ago · Last pushed 7 months ago

Metadata Files

Readme Changelog License Citation

README.Rmd

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# bioregion 


[![R-CMD-check](https://github.com/bioRgeo/bioregion/workflows/R-CMD-check/badge.svg)](https://github.com/bioRgeo/bioregion/actions)
[![Codecov test coverage](https://codecov.io/gh/bioRgeo/bioregion/branch/master/graph/badge.svg)](https://app.codecov.io/gh/bioRgeo/bioregion?branch=master)
[![CRAN_Status_Badge](https://www.r-pkg.org/badges/version/bioregion)](https://cran.r-project.org/package=bioregion) 
[![rstudio mirror downloads](https://cranlogs.r-pkg.org/badges/bioregion)](https://r-pkg.org:443/pkg/bioregion)
[![DOI](https://zenodo.org/badge/612244739.svg)](https://zenodo.org/doi/10.5281/zenodo.10843109)


This **R package** gathers a comprehensive set of algorithms to perform
bioregionalization analyses. 

Bioregionalization methods can be based on 
hierarchical clustering algorithms, non-hierarchical clustering algorithms or 
network algorithms.

## :arrow_double_down: Installation

The package can be installed with the following command line in R session:

From the CRAN

``` r
install.packages("bioregion")
```

or from GitHub

``` r
# install.packages("devtools")
devtools::install_github("bioRgeo/bioregion")
```

## :scroll: Vignettes

We wrote several vignettes that will help you using the **bioregion R package**.
Vignettes available are the following ones: 


- **[1. Installation of the executable binary files](https://bioRgeo.github.io/bioregion/articles/a1_install_binary_files.html)**  
- **[2. Matrix and network formats](https://bioRgeo.github.io/bioregion/articles/a2_matrix_and_network_formats.html)**
- **[3. Pairwise similarity/dissimilarity metrics](https://bioRgeo.github.io/bioregion/articles/a3_pairwise_metrics.html)** 
- **[4.1 Hierarchical clustering](https://bioRgeo.github.io/bioregion/articles/a4_1_hierarchical_clustering.html)** 
- **[4.2 Non-hierarchical clustering](https://bioRgeo.github.io/bioregion/articles/a4_2_non_hierarchical_clustering.html)** 
- **[4.3 Network clustering](https://bioRgeo.github.io/bioregion/articles/a4_3_network_clustering.html)** 
- **[4.4 Microbenchmark](https://bioRgeo.github.io/bioregion/articles/a4_4_microbenchmark.html)** 
- **[5.1 Visualization](https://bioRgeo.github.io/bioregion/articles/a5_1_visualization.html)** 
- **[5.2 Compare bioregionalizations](https://bioRgeo.github.io/bioregion/articles/a5_2_compare_bioregionalizations.html)** 
- **[5.3 Summary metrics](https://bioRgeo.github.io/bioregion/articles/a5_3_summary_metrics.html)** 

Alternatively, if you prefer to view the vignettes in R, you can install the
package with `build_vignettes = TRUE`. But be aware that some vignettes can be
slow to generate.

```{r, eval = FALSE}
remotes::install_github("bioRgeo/bioregion",
                        dependencies = TRUE, 
                        upgrade = "ask", 
                        build_vignettes = TRUE)

vignette("bioregion")
```

## :desktop_computer: Functions

An overview of all functions and data is given 
**[here](https://bioRgeo.github.io/bioregion/reference/index.html)**.

## :bug: Find a bug?

Thank you for finding it. Head over to the GitHub Issues tab and let us know
about it. Alternatively, you can also send us an e-mail.
We will try to get to it as soon as we can!

## References and dependencies  

`bioregion` depends on `ape`, `apcluster`, `bipartite`, `cluster`, `data.table`,
`dbscan`, `dynamicTreeCut`, `earth`, `fastcluster`, `ggplot2`, `grDevices`, 
`httr`, `igraph`, `mathjaxr`, `Matrix`, `phangorn`, `Rdpack`, `rlang`, `rmarkdown`,
`segmented`,`sf`, `stats`, `tidyr` and `utils`.

## Citation

Denelle P, Leroy B & Lenormand M (2025) 
[Bioregionalization analyses with the bioregion R package.](https://besjournals.onlinelibrary.wiley.com/doi/10.1111/2041-210X.14496)
*Methods in Ecology and Evolution* 16, 496-506.

Owner

Name: bioRgeo
Login: bioRgeo
Kind: organization

Repositories: 2
Profile: https://github.com/bioRgeo

Citation (CITATION.cff)

# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "bioregion" in publications use:'
type: software
license: GPL-3.0-only
title: 'bioregion: Comparison of Bioregionalisation Methods'
version: 1.2.0
doi: 10.1111/2041-210X.14496
identifiers:
- type: doi
  value: 10.32614/CRAN.package.bioregion
abstract: The main purpose of this package is to propose a transparent methodological
  framework to compare bioregionalisation methods based on hierarchical and non-hierarchical
  clustering algorithms (Kreft & Jetz (2010) <https://doi.org/10.1111/j.1365-2699.2010.02375.x>)
  and network algorithms (Lenormand et al. (2019) <https://doi.org/10.1002/ece3.4718>
  and Leroy et al. (2019) <https://doi.org/10.1111/jbi.13674>).
authors:
- family-names: Lenormand
  given-names: Maxime
  email: maxime.lenormand@inrae.fr
  orcid: https://orcid.org/0000-0001-6362-3473
- family-names: Leroy
  given-names: Boris
  email: boris.leroy@gmail.com
  orcid: https://orcid.org/0000-0002-7686-4302
- family-names: Denelle
  given-names: Pierre
  email: pierre.denelle@gmail.com
  orcid: https://orcid.org/0000-0001-5037-2281
preferred-citation:
  type: article
  title: Bioregionalization analyses with the bioregion R package
  authors:
  - name: Denelle
  - name: P.
  - name: Leroy
  - name: B.
  - name: Lenormand
  - name: M.
  journal: Methods in Ecology and Evolution
  year: '2025'
  volume: '16'
  doi: 10.1111/2041-210X.14496
  start: 496-506
repository: https://CRAN.R-project.org/package=bioregion
repository-code: https://github.com/bioRgeo/bioregion
url: https://bioRgeo.github.io/bioregion/
contact:
- family-names: Lenormand
  given-names: Maxime
  email: maxime.lenormand@inrae.fr
  orcid: https://orcid.org/0000-0001-6362-3473
keywords:
- biogeography
- bioregion
- bioregionalization
- r
- r-package
references:
- type: software
  title: 'R: A Language and Environment for Statistical Computing'
  notes: Depends
  url: https://www.R-project.org/
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
  version: '>= 4.0.0'
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  title: ape
  abstract: 'ape: Analyses of Phylogenetics and Evolution'
  notes: Imports
  url: https://github.com/emmanuelparadis/ape
  repository: https://CRAN.R-project.org/package=ape
  authors:
  - family-names: Paradis
    given-names: Emmanuel
    email: Emmanuel.Paradis@ird.fr
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  - family-names: Blomberg
    given-names: Simon
    orcid: https://orcid.org/0000-0003-1062-0839
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    orcid: https://orcid.org/0000-0002-2127-0443
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    orcid: https://orcid.org/0000-0002-3835-8062
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    orcid: https://orcid.org/0000-0002-8926-5974
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    given-names: Julien
    orcid: https://orcid.org/0000-0002-9267-1228
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    given-names: Korbinian
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    given-names: Damien
    name-particle: de
    orcid: https://orcid.org/0000-0001-9532-5251
  year: '2025'
  doi: 10.32614/CRAN.package.ape
- type: software
  title: apcluster
  abstract: 'apcluster: Affinity Propagation Clustering'
  notes: Imports
  url: https://github.com/UBod/apcluster
  repository: https://CRAN.R-project.org/package=apcluster
  authors:
  - family-names: Bodenhofer
    given-names: Ulrich
  - family-names: Palme
    given-names: Johannes
  - family-names: Melkonian
    given-names: Chrats
  - family-names: Kothmeier
    given-names: Andreas
  - family-names: Kostic
    given-names: Nikola
  year: '2025'
  doi: 10.32614/CRAN.package.apcluster
- type: software
  title: bipartite
  abstract: 'bipartite: Visualising Bipartite Networks and Calculating Some (Ecological)
    Indices'
  notes: Imports
  url: https://github.com/biometry/bipartite
  repository: https://CRAN.R-project.org/package=bipartite
  authors:
  - family-names: Dormann
    given-names: Carsten F.
    email: carsten.dormann@biom.uni-freiburg.de
    orcid: https://orcid.org/0000-0002-9835-1794
  - family-names: Fruend
    given-names: Jochen
    orcid: https://orcid.org/0000-0002-7079-3478
  - family-names: Gruber
    given-names: Bernd
    orcid: https://orcid.org/0000-0003-0078-8179
  year: '2025'
  doi: 10.32614/CRAN.package.bipartite
- type: software
  title: cluster
  abstract: 'cluster: "Finding Groups in Data": Cluster Analysis Extended Rousseeuw
    et al.'
  notes: Imports
  url: https://svn.r-project.org/R-packages/trunk/cluster/
  repository: https://CRAN.R-project.org/package=cluster
  authors:
  - family-names: Maechler
    given-names: Martin
    email: maechler@stat.math.ethz.ch
    orcid: https://orcid.org/0000-0002-8685-9910
  - family-names: Rousseeuw
    given-names: Peter
    email: peter.rousseeuw@kuleuven.be
    orcid: https://orcid.org/0000-0002-3807-5353
  - family-names: Struyf
    given-names: Anja
  - family-names: Hubert
    given-names: Mia
    email: Mia.Hubert@uia.ua.ac.be
    orcid: https://orcid.org/0000-0001-6398-4850
  year: '2025'
  doi: 10.32614/CRAN.package.cluster
- type: software
  title: data.table
  abstract: 'data.table: Extension of `data.frame`'
  notes: Imports
  url: https://r-datatable.com
  repository: https://CRAN.R-project.org/package=data.table
  authors:
  - family-names: Barrett
    given-names: Tyson
    email: t.barrett88@gmail.com
    orcid: https://orcid.org/0000-0002-2137-1391
  - family-names: Dowle
    given-names: Matt
    email: mattjdowle@gmail.com
  - family-names: Srinivasan
    given-names: Arun
    email: asrini@pm.me
  - family-names: Gorecki
    given-names: Jan
  - family-names: Chirico
    given-names: Michael
    orcid: https://orcid.org/0000-0003-0787-087X
  - family-names: Hocking
    given-names: Toby
    orcid: https://orcid.org/0000-0002-3146-0865
  - family-names: Schwendinger
    given-names: Benjamin
    orcid: https://orcid.org/0000-0003-3315-8114
  year: '2025'
  doi: 10.32614/CRAN.package.data.table
- type: software
  title: dbscan
  abstract: 'dbscan: Density-Based Spatial Clustering of Applications with Noise (DBSCAN)
    and Related Algorithms'
  notes: Imports
  url: https://github.com/mhahsler/dbscan
  repository: https://CRAN.R-project.org/package=dbscan
  authors:
  - family-names: Hahsler
    given-names: Michael
    email: mhahsler@lyle.smu.edu
    orcid: https://orcid.org/0000-0003-2716-1405
  - family-names: Piekenbrock
    given-names: Matthew
  year: '2025'
  doi: 10.32614/CRAN.package.dbscan
- type: software
  title: dynamicTreeCut
  abstract: 'dynamicTreeCut: Methods for Detection of Clusters in Hierarchical Clustering
    Dendrograms'
  notes: Imports
  url: http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/BranchCutting/
  repository: https://CRAN.R-project.org/package=dynamicTreeCut
  authors:
  - family-names: Langfelder
    given-names: Peter
    email: Peter.Langfelder@gmail.com
  - family-names: Zhang
    given-names: Bin
    email: binzhang.ucla@gmail.com
  - family-names: Horvath
    given-names: with contributions from Steve
    email: SHorvath@mednet.ucla.edu
  year: '2025'
  doi: 10.32614/CRAN.package.dynamicTreeCut
- type: software
  title: fastcluster
  abstract: 'fastcluster: Fast Hierarchical Clustering Routines for R and ''Python'''
  notes: Imports
  url: https://danifold.net/fastcluster.html
  repository: https://CRAN.R-project.org/package=fastcluster
  authors:
  - family-names: Müllner
    given-names: Daniel
    email: daniel@danifold.net
  year: '2025'
  doi: 10.32614/CRAN.package.fastcluster
- type: software
  title: fastkmedoids
  abstract: 'fastkmedoids: Faster K-Medoids Clustering Algorithms: FastPAM, FastCLARA,
    FastCLARANS'
  notes: Imports
  repository: https://CRAN.R-project.org/package=fastkmedoids
  authors:
  - family-names: Li
    given-names: Xun
  year: '2025'
  doi: 10.32614/CRAN.package.fastkmedoids
- type: software
  title: ggplot2
  abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics'
  notes: Imports
  url: https://ggplot2.tidyverse.org
  repository: https://CRAN.R-project.org/package=ggplot2
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  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
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    given-names: Winston
    orcid: https://orcid.org/0000-0002-1576-2126
  - family-names: Henry
    given-names: Lionel
  - family-names: Pedersen
    given-names: Thomas Lin
    email: thomas.pedersen@posit.co
    orcid: https://orcid.org/0000-0002-5147-4711
  - family-names: Takahashi
    given-names: Kohske
  - family-names: Wilke
    given-names: Claus
    orcid: https://orcid.org/0000-0002-7470-9261
  - family-names: Woo
    given-names: Kara
    orcid: https://orcid.org/0000-0002-5125-4188
  - family-names: Yutani
    given-names: Hiroaki
    orcid: https://orcid.org/0000-0002-3385-7233
  - family-names: Dunnington
    given-names: Dewey
    orcid: https://orcid.org/0000-0002-9415-4582
  - family-names: Brand
    given-names: Teun
    name-particle: van den
    orcid: https://orcid.org/0000-0002-9335-7468
  year: '2025'
  doi: 10.32614/CRAN.package.ggplot2
- type: software
  title: grDevices
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
- type: software
  title: httr
  abstract: 'httr: Tools for Working with URLs and HTTP'
  notes: Imports
  url: https://httr.r-lib.org/
  repository: https://CRAN.R-project.org/package=httr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2025'
  doi: 10.32614/CRAN.package.httr
- type: software
  title: igraph
  abstract: 'igraph: Network Analysis and Visualization'
  notes: Imports
  url: https://r.igraph.org/
  repository: https://CRAN.R-project.org/package=igraph
  authors:
  - family-names: Csárdi
    given-names: Gábor
    email: csardi.gabor@gmail.com
    orcid: https://orcid.org/0000-0001-7098-9676
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    given-names: Tamás
    email: ntamas@gmail.com
    orcid: https://orcid.org/0000-0002-1451-338X
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    given-names: Vincent
    orcid: https://orcid.org/0000-0003-3170-3879
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    given-names: Szabolcs
    email: szhorvat@gmail.com
    orcid: https://orcid.org/0000-0002-3100-523X
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    given-names: Fabio
    email: fabio.zanini@unsw.edu.au
    orcid: https://orcid.org/0000-0001-7097-8539
  - family-names: Noom
    given-names: Daniel
  - family-names: Müller
    given-names: Kirill
    email: kirill@cynkra.com
    orcid: https://orcid.org/0000-0002-1416-3412
  year: '2025'
  doi: 10.32614/CRAN.package.igraph
- type: software
  title: mathjaxr
  abstract: 'mathjaxr: Using ''Mathjax'' in Rd Files'
  notes: Imports
  url: https://github.com/wviechtb/mathjaxr
  repository: https://CRAN.R-project.org/package=mathjaxr
  authors:
  - family-names: Viechtbauer
    given-names: Wolfgang
    email: wvb@wvbauer.com
    orcid: https://orcid.org/0000-0003-3463-4063
  year: '2025'
  doi: 10.32614/CRAN.package.mathjaxr
- type: software
  title: Matrix
  abstract: 'Matrix: Sparse and Dense Matrix Classes and Methods'
  notes: Imports
  url: https://Matrix.R-forge.R-project.org
  repository: https://CRAN.R-project.org/package=Matrix
  authors:
  - family-names: Bates
    given-names: Douglas
    orcid: https://orcid.org/0000-0001-8316-9503
  - family-names: Maechler
    given-names: Martin
    email: mmaechler+Matrix@gmail.com
    orcid: https://orcid.org/0000-0002-8685-9910
  - family-names: Jagan
    given-names: Mikael
    orcid: https://orcid.org/0000-0002-3542-2938
  year: '2025'
  doi: 10.32614/CRAN.package.Matrix
- type: software
  title: phangorn
  abstract: 'phangorn: Phylogenetic Reconstruction and Analysis'
  notes: Imports
  url: https://klausvigo.github.io/phangorn/
  repository: https://bioconductor.org/
  authors:
  - family-names: Schliep
    given-names: Klaus
    email: klaus.schliep@gmail.com
    orcid: https://orcid.org/0000-0003-2941-0161
  - family-names: Paradis
    given-names: Emmanuel
    orcid: https://orcid.org/0000-0003-3092-2199
  - family-names: Oliveira Martins
    given-names: Leonardo
    name-particle: de
    orcid: https://orcid.org/0000-0001-5247-1320
  - family-names: Potts
    given-names: Alastair
  - family-names: Bardel-Kahr
    given-names: Iris
    orcid: https://orcid.org/0000-0002-8950-834X
  year: '2025'
  doi: 10.32614/CRAN.package.phangorn
- type: software
  title: Rdpack
  abstract: 'Rdpack: Update and Manipulate Rd Documentation Objects'
  notes: Imports
  url: https://geobosh.github.io/Rdpack/
  repository: https://CRAN.R-project.org/package=Rdpack
  authors:
  - family-names: Boshnakov
    given-names: Georgi N.
    email: georgi.boshnakov@manchester.ac.uk
  year: '2025'
  doi: 10.32614/CRAN.package.Rdpack
- type: software
  title: rlang
  abstract: 'rlang: Functions for Base Types and Core R and ''Tidyverse'' Features'
  notes: Imports
  url: https://rlang.r-lib.org
  repository: https://CRAN.R-project.org/package=rlang
  authors:
  - family-names: Henry
    given-names: Lionel
    email: lionel@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2025'
  doi: 10.32614/CRAN.package.rlang
- type: software
  title: rmarkdown
  abstract: 'rmarkdown: Dynamic Documents for R'
  notes: Imports
  url: https://pkgs.rstudio.com/rmarkdown/
  repository: https://CRAN.R-project.org/package=rmarkdown
  authors:
  - family-names: Allaire
    given-names: JJ
    email: jj@posit.co
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  - family-names: Dervieux
    given-names: Christophe
    email: cderv@posit.co
    orcid: https://orcid.org/0000-0003-4474-2498
  - family-names: McPherson
    given-names: Jonathan
    email: jonathan@posit.co
  - family-names: Luraschi
    given-names: Javier
  - family-names: Ushey
    given-names: Kevin
    email: kevin@posit.co
  - family-names: Atkins
    given-names: Aron
    email: aron@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Chang
    given-names: Winston
    email: winston@posit.co
  - family-names: Iannone
    given-names: Richard
    email: rich@posit.co
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2025'
  doi: 10.32614/CRAN.package.rmarkdown
- type: software
  title: segmented
  abstract: 'segmented: Regression Models with Break-Points / Change-Points Estimation
    (with Possibly Random Effects)'
  notes: Imports
  repository: https://CRAN.R-project.org/package=segmented
  authors:
  - family-names: Muggeo
    given-names: Vito M. R.
    email: vito.muggeo@unipa.it
    orcid: https://orcid.org/0000-0002-3386-4054
  year: '2025'
  doi: 10.32614/CRAN.package.segmented
- type: software
  title: sf
  abstract: 'sf: Simple Features for R'
  notes: Imports
  url: https://r-spatial.github.io/sf/
  repository: https://CRAN.R-project.org/package=sf
  authors:
  - family-names: Pebesma
    given-names: Edzer
    email: edzer.pebesma@uni-muenster.de
    orcid: https://orcid.org/0000-0001-8049-7069
  year: '2025'
  doi: 10.32614/CRAN.package.sf
- type: software
  title: stats
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
- type: software
  title: tidyr
  abstract: 'tidyr: Tidy Messy Data'
  notes: Imports
  url: https://tidyr.tidyverse.org
  repository: https://CRAN.R-project.org/package=tidyr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Vaughan
    given-names: Davis
    email: davis@posit.co
  - family-names: Girlich
    given-names: Maximilian
  year: '2025'
  doi: 10.32614/CRAN.package.tidyr
- type: software
  title: utils
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
- type: software
  title: Rcpp
  abstract: 'Rcpp: Seamless R and C++ Integration'
  notes: LinkingTo
  url: https://www.rcpp.org
  repository: https://CRAN.R-project.org/package=Rcpp
  authors:
  - family-names: Eddelbuettel
    given-names: Dirk
    email: edd@debian.org
    orcid: https://orcid.org/0000-0001-6419-907X
  - family-names: Francois
    given-names: Romain
    orcid: https://orcid.org/0000-0002-2444-4226
  - family-names: Allaire
    given-names: JJ
    orcid: https://orcid.org/0000-0003-0174-9868
  - family-names: Ushey
    given-names: Kevin
    orcid: https://orcid.org/0000-0003-2880-7407
  - family-names: Kou
    given-names: Qiang
    orcid: https://orcid.org/0000-0001-6786-5453
  - family-names: Russell
    given-names: Nathan
  - family-names: Ucar
    given-names: Iñaki
    orcid: https://orcid.org/0000-0001-6403-5550
  - family-names: Bates
    given-names: Doug
    orcid: https://orcid.org/0000-0001-8316-9503
  - family-names: Chambers
    given-names: John
  year: '2025'
  doi: 10.32614/CRAN.package.Rcpp
- type: software
  title: ade4
  abstract: 'ade4: Analysis of Ecological Data: Exploratory and Euclidean Methods
    in Environmental Sciences'
  notes: Suggests
  url: http://pbil.univ-lyon1.fr/ADE-4/
  repository: https://CRAN.R-project.org/package=ade4
  authors:
  - family-names: Dray
    given-names: Stéphane
    email: stephane.dray@univ-lyon1.fr
  - family-names: Dufour
    given-names: Anne-Béatrice
    email: anne-beatrice.dufour@univ-lyon1.fr
  - family-names: Thioulouse
    given-names: Jean
    email: jean.thioulouse@univ-lyon1.fr
  - family-names: Jombart
    given-names: with contributions from Thibaut
  - family-names: Pavoine
    given-names: Sandrine
  - family-names: Lobry
    given-names: Jean R.
  - family-names: Ollier
    given-names: Sébastien
  - family-names: Borcard
    given-names: Daniel
  - family-names: Legendre
    given-names: Pierre
  - family-names: Bougeard
    given-names: Stéphanie
  - family-names: Chessel.
    given-names: Aurélie Siberchicot. Based on earlier work by Daniel
  year: '2025'
  doi: 10.32614/CRAN.package.ade4
- type: software
  title: dplyr
  abstract: 'dplyr: A Grammar of Data Manipulation'
  notes: Suggests
  url: https://dplyr.tidyverse.org
  repository: https://CRAN.R-project.org/package=dplyr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: François
    given-names: Romain
    orcid: https://orcid.org/0000-0002-2444-4226
  - family-names: Henry
    given-names: Lionel
  - family-names: Müller
    given-names: Kirill
    orcid: https://orcid.org/0000-0002-1416-3412
  - family-names: Vaughan
    given-names: Davis
    email: davis@posit.co
    orcid: https://orcid.org/0000-0003-4777-038X
  year: '2025'
  doi: 10.32614/CRAN.package.dplyr
- type: software
  title: knitr
  abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
  notes: Suggests
  url: https://yihui.org/knitr/
  repository: https://CRAN.R-project.org/package=knitr
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2025'
  doi: 10.32614/CRAN.package.knitr
- type: software
  title: microbenchmark
  abstract: 'microbenchmark: Accurate Timing Functions'
  notes: Suggests
  url: https://github.com/joshuaulrich/microbenchmark/
  repository: https://CRAN.R-project.org/package=microbenchmark
  authors:
  - family-names: Mersmann
    given-names: Olaf
  year: '2025'
  doi: 10.32614/CRAN.package.microbenchmark
- type: software
  title: rnaturalearth
  abstract: 'rnaturalearth: World Map Data from Natural Earth'
  notes: Suggests
  url: https://docs.ropensci.org/rnaturalearth/
  repository: https://CRAN.R-project.org/package=rnaturalearth
  authors:
  - family-names: Massicotte
    given-names: Philippe
    email: pmassicotte@hotmail.com
    orcid: https://orcid.org/0000-0002-5919-4116
  - family-names: South
    given-names: Andy
    email: southandy@gmail.com
  year: '2025'
  doi: 10.32614/CRAN.package.rnaturalearth
- type: software
  title: rnaturalearthdata
  abstract: 'rnaturalearthdata: World Vector Map Data from Natural Earth Used in ''rnaturalearth'''
  notes: Suggests
  url: https://docs.ropensci.org/rnaturalearthdata/
  repository: https://CRAN.R-project.org/package=rnaturalearthdata
  authors:
  - family-names: South
    given-names: Andy
    email: southandy@gmail.com
    orcid: https://orcid.org/0000-0003-4051-6135
  - family-names: Michael
    given-names: Schramm
    email: mpschramm@gmail.com
  - family-names: Massicotte
    given-names: Philippe
    email: pmassicotte@hotmail.com
    orcid: https://orcid.org/0000-0002-5919-4116
  year: '2025'
  doi: 10.32614/CRAN.package.rnaturalearthdata
- type: software
  title: testthat
  abstract: 'testthat: Unit Testing for R'
  notes: Suggests
  url: https://testthat.r-lib.org
  repository: https://CRAN.R-project.org/package=testthat
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2025'
  doi: 10.32614/CRAN.package.testthat
  version: '>= 3.0.0'

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cran.r-project.org: bioregion

Comparison of Bioregionalisation Methods

Homepage: https://github.com/bioRgeo/bioregion
Documentation: http://cran.r-project.org/web/packages/bioregion/bioregion.pdf
License: GPL-3
Latest release: 1.2.0
published about 1 year ago

Versions: 5
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 707 Last month

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Dependent packages count: 29.7%

Dependent repos count: 35.3%

Average: 51.6%

Downloads: 89.7%

Maintainers (1)

maxime.lenormand@inrae.fr