ecocomDP

A dataset design pattern and R package for ecological community data.

https://github.com/ediorg/ecocomdp

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

○
CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
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Found 2 DOI reference(s) in README
○
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✓
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3 of 12 committers (25.0%) from academic institutions
○
Institutional organization owner
○
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○
Scientific vocabulary similarity
Low similarity (17.0%) to scientific vocabulary

Last synced: 7 months ago · JSON representation

Repository

A dataset design pattern and R package for ecological community data.

Basic Info

Host: GitHub
Owner: EDIorg
License: other
Language: R
Default Branch: main
Homepage: https://ediorg.github.io/ecocomDP/
Size: 41.5 MB

Statistics

Stars: 36
Watchers: 13
Forks: 16
Open Issues: 44
Releases: 7

Created almost 9 years ago · Last pushed 7 months ago

Metadata Files

Readme Changelog Contributing License Code of conduct Codemeta

README.Rmd

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  # fig.path = "man/figures/README-",
  fig.path = "README-",
  out.width = "100%"
)
```

# ecocomDP 


[![CRAN status](https://www.r-pkg.org/badges/version/ecocomDP)](https://cran.r-project.org/package=ecocomDP)


## Overview

Tools to create, use, and convert 'ecocomDP' datasets. 'ecocomDP' is a dataset design pattern for harmonizing ecological community surveys in a research question agnostic format, from source datasets published across multiple repositories, and with methods that keep the derived datasets up-to-date as the underlying sources change. Described in O'Brien et al. (2021), .

## Installation

Get the latest CRAN release:
```{r eval=FALSE}
install.packages("ecocomDP")
```

Get the latest development version:
```{r eval=FALSE}
# install.packages("remotes")
remotes::install_github("EDIorg/ecocomDP", ref = "development")
```

## Usage

* [Create ecocomDP Data](https://ediorg.github.io/ecocomDP/articles/create.html)
* [Use ecocomDP Data](https://ediorg.github.io/ecocomDP/articles/use.html)
* [Convert ecocomDP Data to Another Model Format](https://ediorg.github.io/ecocomDP/articles/convert.html)

## Model documentation
* [Model Overview](https://ediorg.github.io/ecocomDP/articles/model_overview.html)
* [Shared Practices for Creating ecocomDP Data](https://ediorg.github.io/ecocomDP/articles/shared_practices_create.html)

## Getting help

Use [GitHub Issues](https://github.com/EDIorg/ecocomDP/issues) for bug reporting, feature requests, and general questions/discussions. When filing bug reports, please include a minimal reproducible example. 

## Contributing

Community contributions are welcome! Please reference our [contributing guidelines](https://github.com/EDIorg/ecocomDP/blob/master/CONTRIBUTING.md) for details.

-----

Please note that this project is released with a [Contributor Code of Conduct](https://github.com/EDIorg/ecocomDP/blob/master/CODE_OF_CONDUCT.md). By participating in this project you agree to abide by its terms.

Owner

Name: Environmental Data Initiative
Login: EDIorg
Kind: organization
Email: info@edirepository.org

Website: https://edirepository.org/
Twitter: EDIgotdata
Repositories: 12
Profile: https://github.com/EDIorg

Accelerating the archive and reuse of environmental data

CodeMeta (codemeta.json)

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GitHub Events

Total

Issues event: 9
Watch event: 4
Delete event: 5
Issue comment event: 15
Push event: 10
Pull request review event: 1
Pull request event: 9
Fork event: 3
Create event: 4

Last Year

Issues event: 9
Watch event: 4
Delete event: 5
Issue comment event: 15
Push event: 10
Pull request review event: 1
Pull request event: 9
Fork event: 3
Create event: 4

Committers

Last synced: 8 months ago

All Time

Total Commits: 1,716
Total Committers: 12
Avg Commits per committer: 143.0
Development Distribution Score (DDS): 0.297

Past Year

Commits: 5
Committers: 2
Avg Commits per committer: 2.5
Development Distribution Score (DDS): 0.2

Top Committers

Name	Email	Commits
Colin Smith	c**h@w**u	1,206
Margaret O'Brien	m**b@m**u	196
Eric R. Sokol	s**e@g**m	160
Colin Smith	c**v@g**m	87
Ruvi Esmeralda Jaimes	g**y@r**t	24
savannahrayegonzales	5****s	11
will-rosenthal	3****l	11
Corinna Gries	c**s@w**u	9
Kyle Zollo	k**o@g**m	8
Kari Norman	k**i@n**g	2
Yvan Le Bras	y**s@m**r	1
SaraPaull	p**l@b**g	1

Committer Domains (Top 20 + Academic)

wisc.edu: 2 battelleecology.org: 1 mnhn.fr: 1 normanfamily.org: 1 ruvis-mbp.attlocal.net: 1 msi.ucsb.edu: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time

Total issues: 82
Total pull requests: 47
Average time to close issues: over 1 year
Average time to close pull requests: 2 days
Total issue authors: 10
Total pull request authors: 5
Average comments per issue: 1.7
Average comments per pull request: 0.49
Merged pull requests: 42
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 8
Pull requests: 12
Average time to close issues: N/A
Average time to close pull requests: 1 day
Issue authors: 5
Pull request authors: 3
Average comments per issue: 0.0
Average comments per pull request: 0.83
Merged pull requests: 10
Bot issues: 0
Bot pull requests: 0

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Top Authors

Issue Authors

mobb (37)
clnsmth (26)
kzollove (8)
daijiang (4)
jaimesesme (2)
sydnerecord (1)
taddallas (1)
rsbivand (1)
pdil (1)
samsimkin (1)

Pull Request Authors

sokole (22)
clnsmth (12)
kzollove (9)
sydnerecord (2)
samsimkin (2)

Top Labels

Issue Labels

enhancement (29) bug (5) question (3) duplicate (1)

Pull Request Labels

Packages

Total packages: 3
Total downloads:
- cran 407 last-month

Total dependent packages: 0
(may contain duplicates)
Total dependent repositories: 0
(may contain duplicates)
Total versions: 19
Total maintainers: 1

proxy.golang.org: github.com/EDIorg/ecocomDP

Documentation: https://pkg.go.dev/github.com/EDIorg/ecocomDP#section-documentation
License: other
Latest release: v1.3.2
published over 1 year ago

Versions: 6
Dependent Packages: 0
Dependent Repositories: 0

Rankings

Dependent packages count: 5.4%

Average: 5.6%

Dependent repos count: 5.8%

Last synced: 7 months ago

proxy.golang.org: github.com/ediorg/ecocomdp

Documentation: https://pkg.go.dev/github.com/ediorg/ecocomdp#section-documentation
License: other
Latest release: v1.3.2
published over 1 year ago

Versions: 6
Dependent Packages: 0
Dependent Repositories: 0

Rankings

Dependent packages count: 5.4%

Average: 5.6%

Dependent repos count: 5.8%

Last synced: 7 months ago

cran.r-project.org: ecocomDP

Tools to Create, Use, and Convert ecocomDP Data

Homepage: https://github.com/EDIorg/ecocomDP
Documentation: http://cran.r-project.org/web/packages/ecocomDP/ecocomDP.pdf
License: MIT + file LICENSE
Latest release: 1.3.2
published over 1 year ago

Versions: 7
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 407 Last month

Rankings

Forks count: 6.5%

Stargazers count: 10.4%

Average: 25.1%

Dependent packages count: 29.8%

Dependent repos count: 35.5%

Downloads: 43.4%

Maintainers (1)

colin.smith@wisc.edu

Last synced: 7 months ago

Dependencies

DESCRIPTION cran

R >= 3.4.0 depends
EML >= 2.0.5 imports
RColorBrewer >= 1.1 imports
data.table >= 1.13.0 imports
dplyr >= 0.7.1 imports
emld >= 0.5.1 imports
geosphere >= 1.5 imports
ggplot2 >= 3.3.3 imports
httr >= 1.3.1 imports
lubridate >= 1.7.4 imports
magrittr * imports
methods * imports
neonUtilities >= 2.1.1 imports
rlang * imports
rmarkdown * imports
stats * imports
stringr >= 1.2.0 imports
tidyr >= 0.6.1 imports
tools * imports
utils * imports
uuid >= 0.1 imports
xml2 >= 1.3.0 imports
ggrepel * suggests
knitr * suggests
maptools * suggests
mime >= 0.9 suggests
reader >= 1.0.6 suggests
rgdal * suggests
ritis >= 1.0.0 suggests
taxize <= 0.9.99 suggests
testthat * suggests
usmap >= 0.6.0 suggests
worrms >= 0.4.2 suggests