leaddbs
Lead-DBS is a MATLAB toolbox facilitating deep brain stimulation electrode localization and connectomic neuroimaging.
Science Score: 36.0%
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8 of 72 committers (11.1%) from academic institutions -
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○Scientific vocabulary similarity
Low similarity (12.9%) to scientific vocabulary
Keywords from Contributors
Repository
Lead-DBS is a MATLAB toolbox facilitating deep brain stimulation electrode localization and connectomic neuroimaging.
Basic Info
- Host: GitHub
- Owner: netstim
- License: other
- Language: MATLAB
- Default Branch: master
- Homepage: https://www.lead-dbs.org
- Size: 6.49 GB
Statistics
- Stars: 103
- Watchers: 19
- Forks: 103
- Open Issues: 18
- Releases: 26
Metadata Files
README.md
LEAD-DBS
LEAD-DBS is NOT intended for clinical use!
About Lead-DBS
LEAD-DBS is a MATLAB toolbox facilitating the:
- reconstruction of deep-brain-stimulation (DBS) electrodes in the human brain on basis of postoperative MRI and/or CT imaging
- the visualization of localization results in 2D/3D
- a group-analysis of DBS-electrode placement results and their effects on clinical results
- simulation of DBS stimulations (calculation of volume of activated tissue VAT)
- diffusion tensor imaging (DTI) based connectivity estimates and fiber-tracking from the VAT to other brain regions (connectomic surgery)
Installation
Prerequisites
- Recommended RAM size: 32GB or more
- MATLAB version: R2022b or later
- The following MATLAB toolboxes
- MATLAB Image Processing Toolbox
- MATLAB Signal Processing Toolbox
- MATLAB Statistics and Machine Learning Toolbox
- MATLAB Curve Fitting Toolbox (optional)
- MATLAB Parallel Computing Toolbox (optional)
- The SPM12 toolbox
Normal installation
Lead-DBS can be downloaded from our website in fully functional form.
Development installation
Alternatively, especially in case you wish to modify and contribute to Lead-DBS, you can
- Make sure to meet the prerequisites
- Clone the Lead-DBS repository from github.
- Download the necessary data and unzip it into the cloned git repository.
Wed love to implement your improvements into Lead-DBS please contact us for direct push access to Github or feel free to add pull-requests to the Lead-DBS repository.
Getting started
You can run Lead-DBS by typing "lead demo" into the Matlab prompt. This will open up the main GUI and a 3D viewer with an example patient. But there's much more to explore. Head over to our website to see a walkthrough tutorial, a manual, some more screenshots and other ressources. There's also a helpline in form of a Slack channel. We would love to hear from you.
Questions
If you have questions/problems when using Lead-DBS, you can checkout our:
- Online manual
- Workthrough videos
- Knowledge base (including methods, cortical/subcortical atlases, connectomes, etc.)
- Support forum
- Auto-invite Slack workspace
GitHub Events
Total
- Create event: 9
- Commit comment event: 5
- Watch event: 10
- Delete event: 6
- Member event: 1
- Issue comment event: 5
- Push event: 250
- Pull request review event: 2
- Pull request review comment event: 1
- Pull request event: 60
- Fork event: 8
Last Year
- Create event: 9
- Commit comment event: 5
- Watch event: 10
- Delete event: 6
- Member event: 1
- Issue comment event: 5
- Push event: 250
- Pull request review event: 2
- Pull request review comment event: 1
- Pull request event: 60
- Fork event: 8
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Ningfei Li | n****i@g****m | 3,951 |
| andreashorn | m****l@a****e | 1,922 |
| Andreas Horn | a****n@c****e | 527 |
| Simon Oxenford | o****n@g****m | 252 |
| nrajamani3 | n****3@g****u | 230 |
| Johannes Achtzehn | j****n@g****m | 178 |
| Konstantin Butenko | 3****5 | 145 |
| akapp | a****l@g****m | 102 |
| Till | t****k@u****e | 102 |
| neuromodulation_berlin | h****n@n****n | 52 |
| Konstantin Butenko | k****o@c****e | 50 |
| siobhanewert | s****t@g****t | 44 |
| Andreas Husch | 2****h | 40 |
| Nanditha Rajamani | n****1@g****m | 32 |
| oprienrico | r****s@o****t | 25 |
| Daniel Duarte Tojal | d****1@s****u | 18 |
| GaranceMeyer | 1****r | 17 |
| Thushara Perera | t****a@b****g | 17 |
| Loic Marx | l****x@g****m | 16 |
| Andreas Horn | a****n | 14 |
| Min Jae Kim | 5****6 | 12 |
| Chadwick Boulay | c****y@g****m | 12 |
| laurentheirendt | l****t@u****u | 9 |
| Rafael Serrano | r****9@g****m | 9 |
| Barbara Hollunder | b****r@c****e | 9 |
| BrainModulationLab | b****b@g****m | 8 |
| rios.ana | s****1@g****m | 6 |
| artenobot | a****t@u****u | 6 |
| Shelby Bachman | b****n@m****e | 5 |
| tsieger | t****s@s****r | 5 |
| and 42 more... | ||
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 0
- Total pull requests: 25
- Average time to close issues: N/A
- Average time to close pull requests: about 3 hours
- Total issue authors: 0
- Total pull request authors: 8
- Average comments per issue: 0
- Average comments per pull request: 0.04
- Merged pull requests: 18
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 25
- Average time to close issues: N/A
- Average time to close pull requests: about 3 hours
- Issue authors: 0
- Pull request authors: 8
- Average comments per issue: 0
- Average comments per pull request: 0.04
- Merged pull requests: 18
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- Fayed-Rsl (1)
- alessiaca (1)
- maemortondutton (1)
- simonoxen (1)
- tfoutz99 (1)
- Kinway25 (1)
- Stefeg (1)
Pull Request Authors
- Kinway25 (43)
- simonoxen (13)
- patrizvar (12)
- ningfei (8)
- SavirMadan13 (8)
- GaranceMeyer (5)
- Mojackhak (4)
- nrajamani3 (3)
- andreashorn (2)
- oprienrico (1)
- latypovt (1)
Top Labels
Issue Labels
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Dependencies
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