Recent Releases of leaddbs
leaddbs - v1.6.3
- Brainshift correction tool to reduce bias introduced by pneumocephalus
- Updated ANTs normalization presets including a subcortical-refine scheme
- Methods text suggestion exports for most processing steps
- SurfIce integration
For more details, see the latest newsletter.
- MATLAB
Published by ningfei over 9 years ago
leaddbs -
- Added "Subcortical Refine" in Affine coregistrations
- Added SUIT based normalization for brainstem data
- Included PPN atlas (Snijder 2016)
- Included PINS electrodes and both St. Jude Active Tip Models
- Added Tonemapping for CT coregistration .png files
- Added ability to generate checkreg figures from menu, too
- Increased support for Mesotracker
- Improved and easier DICOM import
- Many bug fixes
- MATLAB
Published by andreashorn over 9 years ago
leaddbs - leadsuite.io first release
This is a major new release of Lead-DBS and introduces the Lead Neuroimaging Suite (www.leadsuite.io).
From this release on, Lead-DBS has become a part of the Lead Neuroimaging Suite. The release comes with many bugfixes and improvements in data-files (some are described here: http://www.lead-dbs.org/?p=1241). The update is recommended to all users of the Lead Neuroimaging Suite.
- MATLAB
Published by andreashorn almost 10 years ago
leaddbs -
Fix in DSI studio methodology Included PDF, PLY and STL exports
- MATLAB
Published by andreashorn almost 10 years ago
leaddbs -
- Multiple bugfixes
- Support for ANTs normalization in rs-fMRI pipeline
- MATLAB
Published by andreashorn about 10 years ago
leaddbs - Meola 2016 Brainstem connectome
The Meola 2016 brainstem connectome is the first fiber-atlas included with Lead-DBS. With it, all the statistical functions such as "volume of activated tissue within region" or "contact center how close to nearest atlas voxel" that Lead-DBS automatically calculates have been extended from volumetric data to fiber tracts in this update. It is now fairly easy to import your own fiber bundles from .trk or .mat format (contact us if you need a how-to).
- MATLAB
Published by andreashorn over 10 years ago
leaddbs -
- Added novel coregistration viewer to check accuracies of normalizations and ct/mr-coregistrations (by Todd Herrington)
- Added multimodal ANTs normalization support
- MATLAB
Published by andreashorn over 10 years ago
leaddbs -
Here are the highlights:
• Native view: You can now visualize results in native patient space. Atlases are automatically warped from MNI to native space and can be visualized here, as well • Electrode reconstructions are now performed in a hybrid fashion between MNI and native space. This allows for more accuracy when placing your leads. • You can now enter stimulation parameters more like you would in clinical routine. Model up to 4 different sources in monopolar stimulations. A novel VAT-model will be introduced soon, that takes full advantage of this feature and will support bipolar/interleaved stimulations and constant voltage/current modeling. • The Kuncel 2008 VAT-model has been implemented.
Other features: • Improved stability in normalizations with ANTs using a hybrid SPM/ANTs co-registration approach • The reconstruction viewer has become much faster – which as some of you may know makes a real difference in practice • Support of the new Convis editor introduced in v.1.4.7 in Lead Group and improvements of visualization features of Convis
- MATLAB
Published by ningfei over 10 years ago
leaddbs -
Introducing a whole new connectivity viewer!
Other new features: - support of Advanced Normalization Tools (ANTs) normalization and CT/MRI fusion - better support for BRAINSFit based CT/MRI fusion - the global Gibbs' fibertracking approach is now integrated natively into Lead-DBS (Reisert 2009) - incremental update functionality – lead DBS now only downloads new files upon updates from within Matlab (thanks to Ningfei Li)
- MATLAB
Published by andreashorn over 10 years ago
leaddbs -
Added a novel coregistration check figure and resolved a bug in the DICOM import module.
- MATLAB
Published by andreashorn over 10 years ago
leaddbs - Lead-DBS 1.4.1
Add incremental update support from this version.
- MATLAB
Published by ningfei over 10 years ago
leaddbs - Lead-DBS 1.4.0
Highlights
- Novel electrode format – now any lead design you can think of is possible. This specifically adds support for the novel Boston Scientific Vercise directed leads to the toolbox (see picture). Also, custom made electrodes can be added easily.
- Co-registration between pre-op MRIs and post-op CTs works much more robustly now using BRAINSFit.
- fMRI/dMRI-based connectomic results can now be explored using both a seed-based and graph-theoretical approach in the 3D-viewer. In fMRI, you can even loop across time using a sliding-window approach.
- MATLAB
Published by ningfei over 10 years ago