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tripoli

Tripoli imports raw mass spectrometer data files and supports interactive review and archiving of isotopic data. Tripoli facilitates visualization of temporal trends and scatter during measurement, statistically rigorous filtering of data, and calculation of statistical parameters.

https://github.com/cirdles/tripoli

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (10.5%) to scientific vocabulary

Keywords

mass-spectrometry
Last synced: 6 months ago · JSON representation ·

Repository

Tripoli imports raw mass spectrometer data files and supports interactive review and archiving of isotopic data. Tripoli facilitates visualization of temporal trends and scatter during measurement, statistically rigorous filtering of data, and calculation of statistical parameters.

Basic Info
  • Host: GitHub
  • Owner: CIRDLES
  • License: apache-2.0
  • Language: Java
  • Default Branch: main
  • Homepage: http://cirdles.org/Tripoli/
  • Size: 43.3 MB
Statistics
  • Stars: 10
  • Watchers: 10
  • Forks: 14
  • Open Issues: 11
  • Releases: 62
Topics
mass-spectrometry
Created about 4 years ago · Last pushed 6 months ago
Metadata Files
Readme License Code of conduct Citation

README.md

Tripoli Logo

Build Status Codacy Badge

Tripoli

We are developing Tripoli here - consider contributing to our project!

User Guide

Starting June 2024, Tripoli User Guide can be found here.

NOTE: 9.March.2023. Tripoli is providing a large number of plots and may cause performance errors during rendering.
The fix is described here. Thus, when launching the '.jar' file as described below, add " -Dprism.maxvram=2G " between "java" and "-jar."

Note to Developers

Tripoli can be compiled from the source code by using Gradle 7.4.2 using the same JDK/JRE 17.

text gradle clean build

Tripoli "jar" file can then be built:

text gradle fatappjar

The resulting 'jar' file will be written to "Tripoli/tripoliApp/build/libs/"

Owner

  • Name: CIRDLES
  • Login: CIRDLES
  • Kind: organization
  • Email: bowringj@cofc.edu
  • Location: Charleston, SC

Cyber Infrastructure Research and Development Lab for the Earth Sciences, a NSF-funded research lab at the College of Charleston

Citation (CITATION.cff) 

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: Tripoli
message: Please cite this software using these metadata.
type: software
authors:
  - given-names: James
    family-names: Bowring
    email: bowring@gmail.com
    affiliation: College of Charleston
    orcid: 'https://orcid.org/0000-0002-1897-7093'
  - given-names: Noah
    family-names: McLean
    email: noahmc@ku.edu
    affiliation: University of Kansas
  - given-names: Scott
    family-names: Burdick
    email: sburdick@wayne.edu
    affiliation: Wayne State University
identifiers:
  - type: url
    value: 'http://cirdles.org/Tripoli/'
    description: Tripoli software development home page
repository-code: 'https://github.com/CIRDLES/Tripoli'
url: 'http://cirdles.org/Tripoli/'
abstract: >-
  Tripoli imports raw mass spectrometer data files
  and supports interactive review and archiving of
  isotopic data. Tripoli facilitates visualization of
  temporal trends and scatter during measurement,
  statistically rigorous filtering of data, and
  calculation of statistical parameters.
license: Apache-2.0

GitHub Events

Total
  • Create event: 6
  • Release event: 4
  • Issues event: 22
  • Watch event: 2
  • Delete event: 1
  • Member event: 2
  • Issue comment event: 75
  • Push event: 28
  • Pull request event: 53
Last Year
  • Create event: 6
  • Release event: 4
  • Issues event: 22
  • Watch event: 2
  • Delete event: 1
  • Member event: 2
  • Issue comment event: 75
  • Push event: 28
  • Pull request event: 53

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 32
  • Total pull requests: 53
  • Average time to close issues: about 1 month
  • Average time to close pull requests: 24 days
  • Total issue authors: 7
  • Total pull request authors: 7
  • Average comments per issue: 1.5
  • Average comments per pull request: 0.4
  • Merged pull requests: 29
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 10
  • Pull requests: 23
  • Average time to close issues: 7 days
  • Average time to close pull requests: 16 days
  • Issue authors: 2
  • Pull request authors: 4
  • Average comments per issue: 0.4
  • Average comments per pull request: 0.78
  • Merged pull requests: 9
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • noahmclean (14)
  • riouxm (8)
  • YakovYermakov (4)
  • bowring (2)
  • ryanickert (2)
  • Yashkincot (1)
  • joneelzinto (1)
Pull Request Authors
  • bowring (34)
  • JsonHrdwick (9)
  • JalenEvans (3)
  • PowersOfEight (3)
  • noahmclean (2)
  • ryanickert (1)
  • OscarJGHB (1)
Top Labels
Issue Labels
enhancement (9) bug (7) question (2)
Pull Request Labels
enhancement (1) bug (1)

Dependencies

TripoliApp/build.gradle.kts maven
  • com.github.cirdles:commons bc38781605 implementation
  • eu.hansolo.fx:charts 17.1.13 implementation
  • org.jetbrains:annotations 22.0.0 implementation
  • org.ojalgo:ojalgo 51.4.0 implementation
  • org.junit.jupiter:junit-jupiter-api $junitVersion testImplementation
  • org.junit.jupiter:junit-jupiter-engine $junitVersion testRuntimeOnly
TripoliCore/build.gradle.kts maven
  • com.github.cirdles:commons bc38781605 implementation
  • com.github.topobyte:jama master-SNAPSHOT implementation
  • com.google.guava:guava 31.1-jre implementation
  • com.thoughtworks.xstream:xstream 1.4.19 implementation
  • com.zaxxer:SparseBitSet 1.2 implementation
  • de.jjohannes.gradle:extra-java-module-info 0.14 implementation
  • org.apache.commons:commons-lang3 3.12.0 implementation
  • org.apache.commons:commons-math3 3.6.1 implementation
  • org.apache.poi:poi 5.2.2 implementation
  • org.ojalgo:ojalgo 51.4.0 implementation
  • com.github.cirdles:commons bc38781605 testImplementation
  • org.junit.jupiter:junit-jupiter-api 5.8.2 testImplementation
  • org.junit.jupiter:junit-jupiter-engine 5.8.2 testRuntimeOnly
docs/Gemfile rubygems
  • github-pages ~> 225 development
  • tzinfo ~> 1.2, >= 1.2.10
  • tzinfo-data >= 0
  • wdm ~> 0.1.1
  • webrick ~> 1.7
docs/Gemfile.lock rubygems
  • activesupport 6.0.5.1
  • addressable 2.8.0
  • coffee-script 2.4.1
  • coffee-script-source 1.11.1
  • colorator 1.1.0
  • commonmarker 0.23.5
  • concurrent-ruby 1.1.10
  • dnsruby 1.61.9
  • em-websocket 0.5.3
  • ethon 0.15.0
  • eventmachine 1.2.7
  • execjs 2.8.1
  • faraday 2.4.0
  • faraday-net_http 2.1.0
  • ffi 1.15.5
  • forwardable-extended 2.6.0
  • gemoji 3.0.1
  • github-pages 225
  • github-pages-health-check 1.17.9
  • html-pipeline 2.14.2
  • http_parser.rb 0.8.0
  • i18n 0.9.5
  • jekyll 3.9.0
  • jekyll-avatar 0.7.0
  • jekyll-coffeescript 1.1.1
  • jekyll-commonmark 1.4.0
  • jekyll-commonmark-ghpages 0.2.0
  • jekyll-default-layout 0.1.4
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  • jekyll-titles-from-headings 0.5.3
  • jekyll-watch 2.2.1
  • jemoji 0.12.0
  • kramdown 2.3.1
  • kramdown-parser-gfm 1.1.0
  • liquid 4.0.3
  • listen 3.7.1
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  • minima 2.5.1
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  • tzinfo 1.2.10
  • unf 0.1.4
  • unf_ext 0.0.8.2
  • unicode-display_width 1.8.0
  • webrick 1.7.0
  • zeitwerk 2.6.0