mobsim

Spatial analysis and simulation of ecological communities

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

○
CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
○
DOI references
○
Academic publication links
✓
Committers with academic emails
1 of 6 committers (16.7%) from academic institutions
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (1.1%) to scientific vocabulary

Keywords

biodiversity macroecology point-pattern-analysis r r-package rarefaction rstats simulation species species-abundance-distributions

Last synced: 4 months ago · JSON representation

Repository

Spatial analysis and simulation of ecological communities

Basic Info

Host: GitHub
Owner: MoBiodiv
License: gpl-3.0
Language: R
Default Branch: master
Homepage:
Size: 2.98 MB

Statistics

Stars: 20
Watchers: 5
Forks: 14
Open Issues: 12
Releases: 3

Topics

biodiversity macroecology point-pattern-analysis r r-package rarefaction rstats simulation species species-abundance-distributions

Created over 9 years ago · Last pushed 7 months ago

Metadata Files

Readme Changelog Contributing License Codemeta

README-unnamed-chunk-5-1.png

PNG


IHDR)
PLTE:f3:ff3f33::::f:ff:ffffff:ff:3f3ffu	pHYsod IDATxb6[_4J[d$
`F^? 
\!*f@"SjE@ZjE@ZjE@ZjE@ZjE@ZjE@ZjE@ZjE@ZjE@ZjE@ZjE@ZjE@ZjE@ZjE@ZjE@ZjE@ZjE@ZjE@ZjE@ZW_s,
Hr/*_f#[g?
xist%/%}vjP3v5
Qj^6?RFN;F@()hUlho)C0-L.Xww2]~v>#JN~gxD|+F9`OjGJww2}~UW)[H
f}j@!r[(
tGz`B@6HLxNk9X~,G3#O/tzMXC3h/0#>}&M:FszOJ
O	8>x|HsS2eJ&Ut1l1"9>:)4"1mw!)~ptJx_iBwhTr0V !nn!aW4d"l
P2x0wNpsc#&Ki&	oh%h99)6OOOsm@X3ZhxNZ!:_ @CK`"';evuXZ1%iKu8rZZ!VD8qPw@U7 eFF&:99quz)S0!XZ.l26B8N>N]oo!oX`t;F@f17i2V}\]]Ing2^_Q_WWW.3S\S2`@(+7iKSAZ+g@K@aqf!Dt^C?K#wP{B@:;;S+=y_{/^pY(g=7X
Nru/uNkkfWg!k@JA5>kcFD*G0-Q'y9N&M	`mX(eq
yK@t02K=bV		.rck/3IO- u1/_ @Q"aL3l3OS"
B	

Hc]wn@_ (+Leg$r]dz:Tk:e'1;a2j]iL)YYU1]v~'5 SV j@N\(&en3ynxod9lT(t6/xzl6}oj1j1lj2uF^.W6+5
Sm
Pc"N!ikZSa>l+mln%A&gwu'J9y
`y7mn@}0_$gwce[W@l7Gq8en\@)fi5Ec%Ey3F2rpuue
-)^]
p1|>OoL8O<gX/	@X+V *	19|p~.r/%\noE@g`I%o gVP@Cep&Q30D `,}c9Ax.9F>QG4Ii9;%e;G#5f@r,={lJ>5<mgXvB?1w+P|f@MSumh$>
& h^Wu
$_v{Rj4G4_iN"pUj1eRk-H-g6OOODhEI'pq?(m*ez[lx0
!,-7@w@zPK$9)@]6?Z^Uwol5`?3[ilXl"!k,B.TtwY'37`XnPNrDZ5
?#o"`hg$bybn@!qPLC@]0
H/aNZ`J'c}a1a{'B~G"l@ bio-c$x21
?s|C'KX28>H^h=d>2;'e{f \=ZazKB@o4
ju>'w
/tVCW[v
@@(06{k'h
~`X|-doxLtPx!97@h(@aU;]^^3U>2E_pT"I k
0#
@'X*\QH~JG~*H9%V@6zDI_7_8N4|`tL]YqJq9 A19Wk@6jf/B7N" 
8!Ni3"6=]1p-$`yO5G x{M(02<@/?7!5"SZM1GbR?AcV*F-5	5j|UyqA@J@E@
O((N}hOp0^`9'I!Sd9IE0jiHr}L$ThD5DysU0DPq8zQ=J"rN@iz_$B>	`Kn
:
EO`lZK^*	P!p\-b8/TA~3t35
}Lg5HaGfmJ{ ;Y`l!{lgTh4%4?C*c$k yL$(lro$G%s
m8Hi$Zbai47Lh?;j=+@>ya,FeEYhPG)m0`AJ_`W* 4VT3 ]D{;QNZ
m^0>Xq +;&R+kc/Snl|Q?3q/b6%

Z&:BB
~BV"^"aY7pCUTT*_pl<IP,gs'1eGe
/O{<&\5kY& MM?; FZv
p~Yr*[c;hyW" l9%L<B
'%Q53M?}}4lUl/b"iv!|^	>G~~'Qe?.wW';r`Qm`s~JqvQiRqT
.%'Hf<
$U
TRyZ!7t]^VO&A/o}D;0ZNhR#g(,s)g#s aCiOrWvgNL-ZL)e|xV?@P@WWM[p
v(c(@>m3+]zA1J[Rc5+kCe@i
9]>cj@pFxu"?#HX #Q:"G`

H0J-yr3U%"74pT=|a&8CZ]9pu	[h	mQvmGF
@`O\84HjvHh)
`}(1{}/a_HzE	~-.)W`} E
"X(@p@Bn_Ib YG"[XzHCcnAPtyy	B.NK}WA cK2Yh1/`9(09+;XlpkU"v{UJr0)^;2GwX+k%gM0z9D1wwnW& 2X"WK
'	bX:jv`*^+K Z5Ap >cVQ]E2L<u(Nx&-WWLi@ ;UK%`|0b" z,-XY`+P=*
S7V 90H`.zp~~pV},LR'FC.w-F@k$%
IDATR{Xr#f*|V@Cfq{{JOk#089L@Z?]cTp{[\fDB+@=/%R[/
zR`\`(3`k=nmFi-L2E&.f"[f,YR/ps{7s(^f1RZ"n@>aMe[k\+o(m2kEPm 9*{e>c7Nc[`n20FFJs6G\r8`elMSo%}Ktx#O}Hns}h;F0rP% P/Cw
YX*@/r_/tX?p#^C_`8b1D6ONNx,P866u{{;IX8il@yc4uSJi Zq||QL~8
_-p-xoSV p7>U*u"-
|NcKdp_6+|:`V 
[yU4
@Di	Ht1CUp{{{qo~p+^+mj=(jh@?N>@=/=T@nO*$#r0R=c5tR7wH,>V/H\%0m%,w1pn$`u=@QyamqBBFC*eM;.FO=?Upz#>RN@3;`9:h
kh_@nF@Ff!PtvF5 Rqn7aqKW?+@
3[J,+c@5y?N/}iv7L;y}q	
0Pj
fd!HT'Bm:N(8TiU.55	3'O1:b_x=4D.ul5p'xRCE`&$}}|PgL	U6=R)v(t:1eP;}UH?'{\KY{b
p
V V06 9_z$>"?%^F	xL'cg*`_OPeh5!H0\Ql*Xl3mo
fQt.7eCNy6w@s:$w0u,_!o[h
ZB+6'hDsd:2nQl
N
[]	QyDv[W`O>:*^x@@8kH-5'sFO+8h{+p
E%H&XF PW07776#	p#Mfl	@fY;`HJbaLrgm'D;'z{e&D|,u}?' Q2EE3!dJQ{
h~"^i PY_x%g@%
z|ezkWSQijg 
JBXN~ISe&cyTYXk9U/.j"?'o@NISe&cyTYXk9U/.j"?'o@NH@ZjE@ZjE@ZjEVl~'Of.i8?79.S3Cc	c5_6 _M{; pu?vQ(=mK7jlCDo;]SzkC3(VO_ _ot>l~@DfrrzZN>8jr"XA{t>;b#d`1?vQ{8c6=nOG|(QduU(y|JU\Y/.~pBK?kasT:5G=R5YyO QH_A3h}_XGh;VSY6#1tPZ?!%8_3C4TR"HU U-TR"HU U-TR"HU U-TR"HU U-TR"HU U-TR"HU U-TR"HU U-TRZ ?8'emt/<'emt{WK|Ip,NOiZZ
!)kv{D0lUZ\
KjE@ZjE@ZjE@ZjE@ZjE@ZjEZb$a(IENDB`

Owner

Name: Measurement of Biodiversity (MoB)
Login: MoBiodiv
Kind: organization
Email: danmcglinn@gmail.com

Repositories: 4
Profile: https://github.com/MoBiodiv

The repositories related to an iDiv working group examining best practices in the measurement of biodiversity

CodeMeta (codemeta.json)

{
  "@context": "https://doi.org/10.5063/schema/codemeta-2.0",
  "@type": "SoftwareSourceCode",
  "identifier": "mobsim",
  "description": "Tools for the simulation, analysis and sampling of spatial biodiversity data (May, Gerstner, McGlinn, Xiao & Chase 2017) <doi:10.1101/209502>. In the simulation tools user define the numbers of species and individuals, the species abundance distribution and species aggregation. Functions for analysis include species rarefaction and accumulation curves, species-area relationships and the distance decay of similarity. ",
  "name": "mobsim: Spatial Simulation and Scale-Dependent Analysis of Biodiversity Changes",
  "codeRepository": "https://github.com/MoBiodiv/mobsim",
  "issueTracker": "https://github.com/MoBiodiv/mobsim/issues",
  "license": "https://spdx.org/licenses/GPL-3.0",
  "version": "0.3.1",
  "programmingLanguage": {
    "@type": "ComputerLanguage",
    "name": "R",
    "url": "https://r-project.org"
  },
  "runtimePlatform": "R version 4.3.2 (2023-10-31)",
  "author": [
    {
      "@type": "Person",
      "givenName": "Felix",
      "familyName": "May",
      "email": "felix.may@fu-berlin.de",
      "@id": "https://orcid.org/0000-0002-1106-8188"
    },
    {
      "@type": "Person",
      "givenName": "Alban",
      "familyName": "Sagouis",
      "email": "alban.sagouis@idiv.de",
      "@id": "https://orcid.org/0000-0002-3827-1063"
    }
  ],
  "copyrightHolder": [
    {
      "@type": "Person",
      "givenName": "Felix",
      "familyName": "May",
      "email": "felix.may@fu-berlin.de",
      "@id": "https://orcid.org/0000-0002-1106-8188"
    }
  ],
  "maintainer": [
    {
      "@type": "Person",
      "givenName": "Felix",
      "familyName": "May",
      "email": "felix.may@fu-berlin.de",
      "@id": "https://orcid.org/0000-0002-1106-8188"
    }
  ],
  "softwareSuggestions": [
    {
      "@type": "SoftwareApplication",
      "identifier": "rmarkdown",
      "name": "rmarkdown",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=rmarkdown"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "spatstat.geom",
      "name": "spatstat.geom",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=spatstat.geom"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "spatstat.random",
      "name": "spatstat.random",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=spatstat.random"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "testthat",
      "name": "testthat",
      "version": ">= 3.0.0",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=testthat"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "mockery",
      "name": "mockery",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=mockery"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "knitr",
      "name": "knitr",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=knitr"
    }
  ],
  "softwareRequirements": {
    "1": {
      "@type": "SoftwareApplication",
      "identifier": "R",
      "name": "R",
      "version": ">= 4.0.0"
    },
    "2": {
      "@type": "SoftwareApplication",
      "identifier": "Rcpp",
      "name": "Rcpp",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=Rcpp"
    },
    "3": {
      "@type": "SoftwareApplication",
      "identifier": "vegan",
      "name": "vegan",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=vegan"
    },
    "4": {
      "@type": "SoftwareApplication",
      "identifier": "sads",
      "name": "sads",
      "version": ">= 0.4.1",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=sads"
    },
    "5": {
      "@type": "SoftwareApplication",
      "identifier": "grDevices",
      "name": "grDevices"
    },
    "6": {
      "@type": "SoftwareApplication",
      "identifier": "utils",
      "name": "utils"
    },
    "7": {
      "@type": "SoftwareApplication",
      "identifier": "graphics",
      "name": "graphics"
    },
    "8": {
      "@type": "SoftwareApplication",
      "identifier": "stats",
      "name": "stats"
    },
    "9": {
      "@type": "SoftwareApplication",
      "identifier": "methods",
      "name": "methods"
    },
    "SystemRequirements": null
  },
  "fileSize": "6348.454KB",
  "citation": [
    {
      "@type": "ScholarlyArticle",
      "datePublished": "2018",
      "author": [
        {
          "@type": "Person",
          "givenName": "Felix",
          "familyName": "May"
        },
        {
          "@type": "Person",
          "givenName": "Katharina",
          "familyName": "Gerstner"
        },
        {
          "@type": "Organization",
          "name": "DanMcGlinn"
        },
        {
          "@type": "Person",
          "givenName": "Xiao",
          "familyName": "Xiao"
        },
        {
          "@type": "Person",
          "givenName": [
            "Jonathan",
            "M."
          ],
          "familyName": "Chase"
        }
      ],
      "name": "mobsim: An R package for the simulation and measurement of biodiversity across spatial scales",
      "identifier": "https://doi.org/10.1111/2041-210X.12986",
      "pagination": "-7",
      "@id": "https://doi.org/10.1111/2041-210X.12986",
      "sameAs": "https://doi.org/10.1111/2041-210X.12986",
      "isPartOf": {
        "@type": "PublicationIssue",
        "issueNumber": "6",
        "datePublished": "2018",
        "isPartOf": {
          "@type": [
            "PublicationVolume",
            "Periodical"
          ],
          "volumeNumber": "9",
          "name": "Methods in Ecology and Evolution"
        }
      }
    }
  ],
  "releaseNotes": "https://github.com/MoBiodiv/mobsim/blob/master/NEWS.md",
  "readme": "https://github.com/MoBiodiv/mobsim/blob/master/README.md",
  "contIntegration": "https://github.com/MoBiodiv/mobsim/actions/workflows/R-CMD-check.yaml",
  "developmentStatus": "https://www.repostatus.org/",
  "keywords": [
    "species",
    "simulation",
    "biodiversity",
    "macroecology",
    "rarefaction",
    "point-pattern-analysis",
    "species-abundance-distributions"
  ]
}

GitHub Events

Total

Issues event: 1
Push event: 7
Pull request event: 4
Create event: 3

Last Year

Issues event: 1
Push event: 7
Pull request event: 4
Create event: 3

Committers

Last synced: almost 2 years ago

All Time

Total Commits: 212
Total Committers: 6
Avg Commits per committer: 35.333
Development Distribution Score (DDS): 0.481

Past Year

Commits: 4
Committers: 1
Avg Commits per committer: 4.0
Development Distribution Score (DDS): 0.0

Top Committers

Name	Email	Commits
FelixMay	f**y@i**e	110
Alban Sagouis	a**s@i**e	58
AlbanSagouis	2****s	19
FelixMay	f**y@f**e	18
KatharinaGerstner	k**r@i**e	6
Dan McGlinn	d**n@g**m	1

Committer Domains (Top 20 + Academic)

idiv.de: 3 fu-berlin.de: 1

Issues and Pull Requests

Last synced: 5 months ago

All Time

Total issues: 29
Total pull requests: 9
Average time to close issues: 10 months
Average time to close pull requests: 10 months
Total issue authors: 7
Total pull request authors: 3
Average comments per issue: 1.38
Average comments per pull request: 0.56
Merged pull requests: 4
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 1
Pull requests: 4
Average time to close issues: N/A
Average time to close pull requests: 2 days
Issue authors: 1
Pull request authors: 1
Average comments per issue: 0.0
Average comments per pull request: 0.0
Merged pull requests: 3
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

dmcglinn (14)
FelixMay (8)
KatharinaGerstner (2)
rueuntal (2)
frafra (1)
MichaelWohlwend42 (1)
hadley (1)

Pull Request Authors

AlbanSagouis (10)
DrMattG (1)
rubak (1)

Top Labels

Issue Labels

enhancement (5) bug (4) question (3)

Pull Request Labels

Packages

Total packages: 1
Total downloads:
- cran 195 last-month

Total dependent packages: 0
Total dependent repositories: 0
Total versions: 4
Total maintainers: 1

cran.r-project.org: mobsim

Spatial Simulation and Scale-Dependent Analysis of Biodiversity Changes

Homepage: https://github.com/MoBiodiv/mobsim
Documentation: http://cran.r-project.org/web/packages/mobsim/mobsim.pdf
License: GPL (≥ 3)
Latest release: 0.3.2
published about 1 year ago

Versions: 4
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 195 Last month

Rankings

Dependent packages count: 28.0%

Dependent repos count: 36.0%

Average: 49.5%

Downloads: 84.4%

Maintainers (1)

felix.may@fu-berlin.de

Last synced: 5 months ago

Dependencies

DESCRIPTION cran

Rcpp * imports
grDevices * imports
graphics * imports
sads >= 0.4.1 imports
stats * imports
utils * imports
vegan * imports
knitr * suggests
rmarkdown * suggests
spatstat >= 2.0 suggests
spatstat.core * suggests
spatstat.geom * suggests
testthat * suggests

.github/workflows/R-CMD-check.yaml actions

actions/checkout v3 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

mobsim

Science Score: 36.0%

Keywords

Repository

Basic Info

Statistics

Topics

Metadata Files

README-unnamed-chunk-5-1.png

Owner

CodeMeta (codemeta.json)

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Packages

cran.r-project.org: mobsim

Rankings

Maintainers (1)

Dependencies