SLOPE

Sorted L1 Penalized Estimation

https://github.com/jolars/slope

Science Score: 54.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
○
DOI references
○
Academic publication links
✓
Committers with academic emails
1 of 7 committers (14.3%) from academic institutions
○
Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (15.5%) to scientific vocabulary

Keywords

generalized-linear-models r slope sparse-regression

Last synced: 6 months ago · JSON representation ·

Repository

Sorted L1 Penalized Estimation

Basic Info

Host: GitHub
Owner: jolars
License: gpl-3.0
Language: C++
Default Branch: main
Homepage: https://jolars.github.io/SLOPE
Size: 30.6 MB

Statistics

Stars: 19
Watchers: 4
Forks: 11
Open Issues: 0
Releases: 10

Topics

generalized-linear-models r slope sparse-regression

Created almost 6 years ago · Last pushed 6 months ago

Metadata Files

Readme Changelog License Code of conduct Citation

README.Rmd

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# SLOPE 


[![R build status](https://github.com/jolars/SLOPE/workflows/R-CMD-check/badge.svg)](https://github.com/jolars/SLOPE/actions)
[![Coverage status](https://codecov.io/gh/jolars/SLOPE/graph/badge.svg?token=SmorGv47Zg)](https://app.codecov.io/github/jolars/SLOPE)
[![CRAN status](https://www.r-pkg.org/badges/version/SLOPE)](https://CRAN.R-project.org/package=SLOPE)
[![Codecov test coverage](https://codecov.io/gh/jolars/SLOPE/graph/badge.svg)](https://app.codecov.io/gh/jolars/SLOPE)


Efficient implementations for Sorted L-One Penalized Estimation
(SLOPE): generalized linear models regularized with the sorted L1-norm.
There is support for
ordinary least-squares regression, binomial regression, multinomial
regression, and poisson regression, as well as both dense and sparse
predictor matrices. In addition, the package features predictor screening
rules that enable efficient solutions to high-dimensional problems.

## Installation

You can install the current stable release from
[CRAN](https://cran.r-project.org/) with

``` r
install.packages("SLOPE")
```

or the development version from [GitHub](https://github.com/) with

``` r
# install.packages("remotes")
remotes::install_github("jolars/SLOPE")
```

## Versioning

SLOPE uses [semantic versioning](https://semver.org).

## Code of conduct

Please note that the 'SLOPE' project is released with a
[Contributor Code of Conduct](https://jolars.github.io/SLOPE/CODE_OF_CONDUCT.html).
By contributing to this project, you agree to abide by its terms.

Owner

Name: Johan Larsson
Login: jolars
Kind: user
Location: Lund, Sweden
Company: University of Copenhagen

Website: https://jolars.co
Repositories: 169
Profile: https://github.com/jolars

Postdoc in statistics at the Department of Mathematical Sciences, University of Copenhagen

Citation (CITATION.cff)

cff-version: 1.2.0
title: 'SLOPE: Sorted L1 Penalized Estimation'
message: >-
  If you use this software, please cite it using
  these metadata.
type: software
authors:
  - given-names: Johan
    family-names: Larsson
    email: johanlarsson@outlook.com
    affiliation: 'Department of Statistics, Lund University'
    orcid: 'https://orcid.org/0000-0002-4029-5945'
  - given-names: Jonas
    family-names: Wallin
    email: jonas.wallin@stat.lu.se
    affiliation: 'Department of Statistics, Lund University'
    orcid: 'https://orcid.org/0000-0003-0381-6593'
  - given-names: Malgorzata
    family-names: Bogdan
    orcid: 'https://orcid.org/0000-0002-0657-4342'
    email: malgorzata.bogdan@stat.lu.se
  - given-names: Ewout
    name-particle: van der
    family-names: Berg
  - given-names: Chiara
    family-names: Sabatti
  - given-names: Emmanuel
    family-names: Candes
  - given-names: Evan
    family-names: Patterson
  - given-names: Weijie
    family-names: Su
  - given-names: Jakub
    family-names: Kała
  - given-names: Krystyna
    family-names: Grzesiak
  - given-names: Michal
    family-names: Burdukiewicz
    orcid: 'https://orcid.org/0000-0001-8926-582X'
  - given-names: Mathurin
    family-names: Massias
    orcid: 'https://orcid.org/0000-0002-8950-0356'
  - given-names: Quentin
    family-names: Klopfenstein
    orcid: 'https://orcid.org/0000-0002-5771-6013'
repository-code: 'https://github.com/jolars/SLOPE'
url: 'https://jolars.github.io/SLOPE/'
abstract: >-
  Efficient implementations for Sorted L-One
  Penalized Estimation (SLOPE): generalized linear
  models regularized with the sorted L1-norm (Bogdan
  et al. (2015) <doi:10.1214/15-AOAS842>). Supported models
  include ordinary least-squares regression, binomial
  regression, multinomial regression, and Poisson
  regression. Both dense and sparse predictor
  matrices are supported. In addition, the package
  features predictor screening rules that enable fast
  and efficient solutions to high-dimensional
  problems.
keywords:
  - SLOPE
  - regularization
  - sparse regression
  - generalized linear models
license: GPL-3.0-or-later

GitHub Events

Total

Issues event: 23
Watch event: 1
Delete event: 11
Issue comment event: 8
Push event: 135
Pull request review event: 9
Pull request review comment event: 13
Pull request event: 21
Fork event: 1
Create event: 12

Last Year

Issues event: 23
Watch event: 1
Delete event: 11
Issue comment event: 8
Push event: 135
Pull request review event: 9
Pull request review comment event: 13
Pull request event: 21
Fork event: 1
Create event: 12

Committers

Last synced: over 2 years ago

All Time

Total Commits: 385
Total Committers: 7
Avg Commits per committer: 55.0
Development Distribution Score (DDS): 0.6

Past Year

Commits: 0
Committers: 0
Avg Commits per committer: 0.0
Development Distribution Score (DDS): 0.0

Top Committers

Name	Email	Commits
Johan Larsson	m**l@l**m	154
Johan Larsson	j**n@o**m	152
KrystynaGrzesiak	k**1@g**m	42
jakubkala	k**6@g**m	32
KrystynaGrzesiak	4****k	3
Michał Burdukiewicz	m**z@g**m	1
DominikRafacz	d**z@s**l	1

Committer Domains (Top 20 + Academic)

student.mini.pw.edu.pl: 1 larssonjohan.com: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 21
Total pull requests: 25
Average time to close issues: 8 months
Average time to close pull requests: 5 months
Total issue authors: 5
Total pull request authors: 7
Average comments per issue: 0.86
Average comments per pull request: 0.8
Merged pull requests: 9
Bot issues: 0
Bot pull requests: 8

Past Year

Issues: 5
Pull requests: 14
Average time to close issues: 4 days
Average time to close pull requests: 14 days
Issue authors: 2
Pull request authors: 3
Average comments per issue: 0.4
Average comments per pull request: 0.07
Merged pull requests: 4
Bot issues: 0
Bot pull requests: 7

View more stats

Top Authors

Issue Authors

jolars (17)
straw-boy (1)
KrystynaGrzesiak (1)
michbur (1)
RomanParzer (1)

Pull Request Authors

dependabot[bot] (13)
jolars (7)
kushagragpt99 (3)
Chaitany1729 (2)
jakubkala (2)
KrystynaGrzesiak (1)
straw-boy (1)

Top Labels

Issue Labels

bug (3) enhancement (2) help wanted (1) discussion (1) good first issue (1) GSOC (1)

Pull Request Labels

dependencies (13) github_actions (2)

Packages

Total packages: 1
Total downloads:
- cran 432 last-month

Total dependent packages: 3
Total dependent repositories: 4
Total versions: 13
Total maintainers: 1

cran.r-project.org: SLOPE

Sorted L1 Penalized Estimation

Homepage: https://jolars.github.io/SLOPE/
Documentation: http://cran.r-project.org/web/packages/SLOPE/SLOPE.pdf
License: GPL-3
Latest release: 1.0.1
published 8 months ago

Versions: 13
Dependent Packages: 3
Dependent Repositories: 4
Downloads: 432 Last month

Rankings

Forks count: 7.3%

Dependent packages count: 10.9%

Stargazers count: 12.9%

Dependent repos count: 14.6%

Average: 16.7%

Downloads: 37.7%

Maintainers (1)

johanlarsson@outlook.com

Last synced: 6 months ago

Dependencies

DESCRIPTION cran

R >= 3.5.0 depends
Matrix * imports
Rcpp * imports
checkmate * imports
foreach * imports
ggplot2 * imports
glmnet * imports
methods * imports
mice * imports
bench * suggests
caret * suggests
covr * suggests
dplyr * suggests
knitr * suggests
rmarkdown * suggests
scales * suggests
spelling * suggests
stringr * suggests
testthat >= 2.1.0 suggests
tidyr * suggests
vdiffr * suggests

.github/workflows/R-CMD-check.yaml actions

actions/checkout v4 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/pkgdown.yaml actions

JamesIves/github-pages-deploy-action v4.6.3 composite
actions/checkout v4 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/recheck.yaml actions

.github/workflows/rhub.yaml actions

r-hub/actions/checkout v1 composite
r-hub/actions/platform-info v1 composite
r-hub/actions/run-check v1 composite
r-hub/actions/setup v1 composite
r-hub/actions/setup-deps v1 composite
r-hub/actions/setup-r v1 composite

ecosyste.ms

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Open Source Science

SLOPE

Science Score: 54.0%

Keywords

Repository

Basic Info

Statistics

Topics

Metadata Files

README.Rmd

Owner

Citation (CITATION.cff)

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Packages

cran.r-project.org: SLOPE

Rankings

Maintainers (1)

Dependencies