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nigsp

NiGSP: a module for graph signal processing on neuroimaging data

https://github.com/miplabch/nigsp

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 5 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (8.9%) to scientific vocabulary

Keywords

brain hacktoberfest mri neuroimaging python

Keywords from Contributors

brain-imaging fmri physiology cvr lagged-glm brainweb
Last synced: 6 months ago · JSON representation

Repository

NiGSP: a module for graph signal processing on neuroimaging data

Basic Info
Statistics
  • Stars: 20
  • Watchers: 3
  • Forks: 13
  • Open Issues: 13
  • Releases: 34
Topics
brain hacktoberfest mri neuroimaging python
Created about 4 years ago · Last pushed 8 months ago
Metadata Files
Readme Changelog License Zenodo

README.md

nigsp

NiGSP

Latest version Release date Auto Release

See the documentation at: https://nigsp.readthedocs.io Latest DOI <!-- For badge only: Latest DOI --> Licensed Apache 2.0

Codecov Build Status Documentation Status

Latest version Supports python version

All Contributors <!-- ALL-CONTRIBUTORS-BADGE:END -->

A python library (and toolbox!) to run Graph Signal Processing on multimodal MRI data. Full documentation on ReadTheDocs

The project is currently under development stage beta. Any suggestion/bug report is welcome! Feel free to open an issue.

This project follows the all-contributors specification. Contributions of any kind welcome!

Cite

If you use nigsp in your work, please cite either the all-time Zenodo DOI general Zenodo DOI or the Zenodo DOI related to the version you are using. Please cite the following paper(s) too:

Preti, M.G., Van De Ville, D. Decoupling of brain function from structure reveals regional behavioral specialization in humans. Nat Commun 10, 4747 (2019). https://doi.org/10.1038/s41467-019-12765-7.

If you are using the Couple/Decoupled Functional Connectivity, please cite also:

Griffa, A., et al. Brain structure-function coupling provides signatures for task decoding and individual fingerprinting. NeuroImage 250, 118970 (2022). https://doi.org/10.1016/j.neuroimage.2022.118970.

Stefano Moia
Stefano Moia
🤔 💻 🚇 📖 📆		 Nawal Kinani
Nawal Kinani
🎨		 Mathieu Scheltienne
Mathieu Scheltienne
🚇 📦		 Maria Giulia Preti
Maria Giulia Preti
🧑‍🏫 🤔 💻 🖋		 Dimitri Van De Ville
Dimitri Van De Ville
🧑‍🏫 🤔 🖋 💵

License

Copyright 2022, Stefano Moia, EPFL.

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

Owner

  • Name: MIPLabCH
  • Login: MIPLabCH
  • Kind: organization

GitHub Events

Total
  • Watch event: 3
  • Delete event: 4
  • Issue comment event: 1
  • Push event: 8
  • Pull request event: 10
  • Create event: 5
Last Year
  • Watch event: 3
  • Delete event: 4
  • Issue comment event: 1
  • Push event: 8
  • Pull request event: 10
  • Create event: 5

Committers

Last synced: almost 3 years ago

All Time
  • Total Commits: 302
  • Total Committers: 6
  • Avg Commits per committer: 50.333
  • Development Distribution Score (DDS): 0.238
Top Committers
Name Email Commits
Stefano Moia s****h@g****m 230
Stefano Moia s****a@b****u 57
pre-commit-ci[bot] 6****]@u****m 10
Mathieu Scheltienne m****e@f****h 2
dependabot[bot] 4****]@u****m 2
Nawal n****y@g****m 1
Committer Domains (Top 20 + Academic)
fcbg.ch: 1 bcbl.eu: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 12
  • Total pull requests: 110
  • Average time to close issues: 15 days
  • Average time to close pull requests: 8 days
  • Total issue authors: 4
  • Total pull request authors: 9
  • Average comments per issue: 1.0
  • Average comments per pull request: 1.25
  • Merged pull requests: 103
  • Bot issues: 0
  • Bot pull requests: 41
Past Year
  • Issues: 0
  • Pull requests: 9
  • Average time to close issues: N/A
  • Average time to close pull requests: about 8 hours
  • Issue authors: 0
  • Pull request authors: 3
  • Average comments per issue: 0
  • Average comments per pull request: 0.22
  • Merged pull requests: 9
  • Bot issues: 0
  • Bot pull requests: 6
View more stats
Top Authors
Issue Authors
  • mscheltienne (4)
  • smoia (2)
  • venkateshness (2)
  • hugofluhr (2)
Pull Request Authors
  • pre-commit-ci[bot] (58)
  • smoia (51)
  • mscheltienne (19)
  • dependabot[bot] (6)
  • venkateshness (1)
  • domguia (1)
  • NawalK (1)
  • merelvdthiel (1)
  • hugofluhr (1)
Top Labels
Issue Labels
Enhancement (6) Bug (1) Released (1) Documentation (1) Discussion (1) Internal (1)
Pull Request Labels
Internal (86) Released (45) Minormod (16) Testing (15) Documentation (13) Minormod-breaking (10) BugFIX (8) Refactoring (3) Skip release (1) hacktoberfest-accepted (1)

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 135 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 1
  • Total versions: 32
  • Total maintainers: 1
pypi.org: nigsp

A python library (and toolbox!) to run Graph Signal Processing on multimodal MRI data.

  • Versions: 32
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 135 Last month
Rankings
Dependent packages count: 10.1%
Forks count: 10.9%
Stargazers count: 14.9%
Average: 15.1%
Downloads: 17.8%
Dependent repos count: 21.5%
Maintainers (1)
smoia
Last synced: 6 months ago

Dependencies

requirements.txt pypi
  • numpy >=1.9.3
.github/workflows/auto-release.yml actions
  • actions/checkout v3 composite
.github/workflows/python-publish.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v4 composite
setup.py pypi