nigsp - 0.19.0

💥 Breaking Change during development

• Numpy 2.0 + scipy + matplotlib pre-release workflow #89 (@mscheltienne @pre-commit-ci[bot])

🏠 Internal

• [pre-commit.ci] pre-commit autoupdate #94 (@pre-commit-ci[bot])
• Add auto PR labeler #93 (@mscheltienne @smoia)

Authors: 3

• @pre-commit-ci[bot]
• Mathieu Scheltienne (@mscheltienne)
• Stefano Moia (@smoia)

- Python
Published by smoia about 2 years ago

nigsp - 0.18.5

🐛 Bug Fix

• [pre-commit.ci] pre-commit autoupdate #92 (@pre-commit-ci[bot])

Authors: 1

• @pre-commit-ci[bot]

- Python
Published by smoia about 2 years ago

nigsp - 0.18.4

🐛 Bug Fix

• [pre-commit.ci] pre-commit autoupdate #91 (@pre-commit-ci[bot])

🏠 Internal

• [pre-commit.ci] pre-commit autoupdate #87 (@pre-commit-ci[bot])
• Fix versioneer for python >= 3.12 #86 (@mscheltienne @pre-commit-ci[bot])

Authors: 2

• @pre-commit-ci[bot]
• Mathieu Scheltienne (@mscheltienne)

- Python
Published by smoia about 2 years ago

nigsp - 0.18.3

🐛 Bug Fix

• Fix laplacian and degree shape check in laplacian.normalisation #82 (@smoia)

🏠 Internal

• [pre-commit.ci] pre-commit autoupdate #81 (@pre-commit-ci[bot])

Authors: 2

• @pre-commit-ci[bot]
• Stefano Moia (@smoia)

- Python
Published by smoia over 2 years ago

nigsp - 0.18.2

:tada: This release contains work from a new contributor! :tada:

Thank you, null@merelvdthiel, for all your work!

🐛 Bug Fix

• update upstream path contributors file #84 (@merelvdthiel)

📝 Documentation

• Fix documentation build and API #80 (@smoia)
• Add Furo theme to the documentation build #70 (@mscheltienne @pre-commit-ci[bot])

⚠️ Tests

• Use assert_allclose from numpy.testing instead of np.allclose in matrix comparison tests #69 (@mscheltienne)

🏠 Internal

• Bump actions/setup-python from 4 to 5 #85 (@dependabot[bot])
• [pre-commit.ci] pre-commit autoupdate #79 (@pre-commit-ci[bot])
• Bump actions/checkout from 3 to 4 #78 (@dependabot[bot])
• int: Update actions versions #78 (@smoia)

Authors: 5

• @dependabot[bot]
• @merelvdthiel
• @pre-commit-ci[bot]
• Mathieu Scheltienne (@mscheltienne)
• Stefano Moia (@smoia)

- Python
Published by smoia over 2 years ago

nigsp - 0.18.1

🐛 Bug Fix

• Fix computation of degree matrix (from normal matrix to its adjacency) #67 (@smoia)

🏠 Internal

• [pre-commit.ci] pre-commit autoupdate #65 (@pre-commit-ci[bot] @smoia)

Authors: 2

• @pre-commit-ci[bot]
• Stefano Moia (@smoia)

- Python
Published by smoia almost 3 years ago

nigsp - 0.18.0

🚀 Enhancement

• Add settings to consider self-loops when computing Laplacians #64 (@smoia @pre-commit-ci[bot])
• docs: Save DOI badge version #64 (@smoia)

📝 Documentation

• Update contributions #62 (@smoia)

🏠 Internal

• Add codespell to code checks #60 (@smoia)
• Attempt to fix the auto release error #61 (@smoia)
• int: update CI/CD Ubuntu version #58 (@smoia)

Authors: 2

• @pre-commit-ci[bot]
• Stefano Moia (@smoia)

- Python
Published by smoia about 3 years ago

nigsp - 0.17.0

💥 Breaking Change during development

• Improve extension handling, and make .tsv.gz the default extension #57 (@smoia)

🏠 Internal

• [pre-commit.ci] pre-commit autoupdate #56 (@pre-commit-ci[bot])

Authors: 2

• @pre-commit-ci[bot]
• Stefano Moia (@smoia)

- Python
Published by smoia about 3 years ago

nigsp - 0.16.1

🐛 Bug Fix

• fix: If the matrix diagonal is zeroed, zero the identity matrix (@smoia)

Authors: 1

• Stefano Moia (@smoia)

- Python
Published by smoia about 3 years ago

nigsp - 0.16.0

:tada: This release contains work from a new contributor! :tada:

Thank you, @NawalK, for all your work!

🚀 Enhancement

• Add map of filetypes to related loading functions for matricial data (io.LOADMAT_DICT) #55 (@smoia)
• Add outflow random walk normalisation (and specify former random walk as inflow random walk) #54 (@smoia)

📝 Documentation

• Add logo folder with guidelines, eps and png files #52 (@NawalK)

🏠 Internal

• [pre-commit.ci] pre-commit autoupdate #53 (@pre-commit-ci[bot])
• [pre-commit.ci] pre-commit autoupdate #51 (@pre-commit-ci[bot])
• [pre-commit.ci] pre-commit autoupdate #50 (@pre-commit-ci[bot])
• [pre-commit.ci] pre-commit autoupdate #49 (@pre-commit-ci[bot])

Authors: 3

• @NawalK
• @pre-commit-ci[bot]
• Stefano Moia (@smoia)

- Python
Published by smoia about 3 years ago

nigsp - 0.15.0

🚀 Enhancement

• Adjust io.load_nifti_get_mask to expect 4 dimensions in timeseries and 3 in masks by default #48 (@smoia)

🏠 Internal

• [pre-commit.ci] pre-commit autoupdate #47 (@pre-commit-ci[bot])

Authors: 2

• @pre-commit-ci[bot]
• Stefano Moia (@smoia)

- Python
Published by smoia over 3 years ago

nigsp - 0.14.0

💥 Breaking Change during development

• Make FC a metric with optional computation #24 (@smoia @pre-commit-ci[bot])

🏠 Internal

• [pre-commit.ci] pre-commit autoupdate #46 (@pre-commit-ci[bot])

Authors: 2

• @pre-commit-ci[bot]
• Stefano Moia (@smoia)

- Python
Published by smoia over 3 years ago

nigsp - 0.13.0

🚀 Enhancement

• Add timeseries resizing methods and improve colorbar plotting options #43 (@smoia)

🏠 Internal

• Bump actions/checkout from 2 to 3 #44 (@dependabot[bot])
• Bump actions/setup-python from 2 to 4 #45 (@dependabot[bot])

Authors: 2

• @dependabot[bot]
• Stefano Moia (@smoia)

- Python
Published by smoia over 3 years ago

nigsp - 0.12.2

🐛 Bug Fix

• Add dependabot config to keep GitHub actions up-to date #42 (@mscheltienne)

Authors: 1

• Mathieu Scheltienne (@mscheltienne)

- Python
Published by smoia over 3 years ago

nigsp - 0.12.1

:tada: This release contains work from a new contributor! :tada:

Thank you, Mathieu Scheltienne (@mscheltienne), for all your work!

🐛 Bug Fix

• Syncronise required packages versions and add DS_Store to .gitignore #41 (@mscheltienne)

🏠 Internal

• [pre-commit.ci] pre-commit autoupdate #39 (@pre-commit-ci[bot])

Authors: 2

• @pre-commit-ci[bot]
• Mathieu Scheltienne (@mscheltienne)

- Python
Published by smoia over 3 years ago

nigsp - 0.12.0

💥 Breaking Change during development

• Add laplacian computation and normalisation independent functions #36 (@smoia)

Authors: 1

• Stefano Moia (@smoia)

- Python
Published by smoia over 3 years ago

nigsp - 0.11.0

🚀 Enhancement

• Add edges vs nodes plotting, improve plotting in general #35 (@smoia)

Authors: 1

• Stefano Moia (@smoia)

- Python
Published by smoia over 3 years ago

nigsp - 0.10.1

🐛 Bug Fix

• Fix initialisation (remove test packages) #37 (s.moia@bcbl.eu)

Authors: 1

• Stefano Moia (@smoia)

- Python
Published by smoia over 3 years ago

nigsp - 0.10.0

🚀 Enhancement

• Add function to recompose laplacian from eigenvalues and eigenvectors #34 (@smoia)

Authors: 1

• Stefano Moia (@smoia)

- Python
Published by smoia over 3 years ago

nigsp - 0.9.0

🚀 Enhancement

• Add possibility (1) to specify which diagonal to use for matrices symmetric normalisation and (2) to avoid "0" elements in the diagonal #29 (@smoia)
• Add duecredit to keep track of citations #27 (@smoia)
• int: Bump up github-action-x/commit to 2.9 #27 (@smoia)

💻 Refactored

• Apply automatic formatting (black & isort) on code (tests and push) #26 (@smoia)

🐛 Bug Fix

• Remove auto restyling in tests and PR merges given pre-commit #33 (@smoia)
• Fix diagonal matrix check in operations.laplacian.symmetric_normalisation #32 (@smoia)

⚠️ Pushed to master

• int: Remove empty line in config (@smoia)
• int: Fix path for black formatting (@smoia)

⚠️ Tests

• Add style check test (flake8) #25 (@smoia)

🏠 Internal

• Add isort, flake8, pydocstyle, and rst pre-coomit hooks (and dev dependencies) #31 (@smoia)
• Add pre-commit to repository #30 (@smoia @pre-commit-ci[bot])

Authors: 2

• @pre-commit-ci[bot]
• Stefano Moia (@smoia)

- Python
Published by smoia over 3 years ago

nigsp - 0.8.0

💥 Breaking Change during development

• Express SDI as log2 of bands quotient #23 (@smoia)

⚠️ Pushed to master

• docs: Update documentation home page (@smoia)

Authors: 1

• Stefano Moia (@smoia)

- Python
Published by smoia almost 4 years ago

nigsp - 0.7.1

🐛 Bug Fix

• Fix metric plot threshold #22 (@smoia)

Authors: 1

• Stefano Moia (@smoia)

- Python
Published by smoia almost 4 years ago

nigsp - 0.7.0

💥 Breaking Change during development

• Add extensive testing and fixs issues #16 (@smoia)

🏠 Internal

• Fix minor documentation issues #21 (@smoia)

Authors: 1

• Stefano Moia (@smoia)

- Python
Published by smoia almost 4 years ago

nigsp - 0.6.1

🐛 Bug Fix

• Fix issues with documentation and automatise API #20 (@smoia)

Authors: 1

• Stefano Moia (@smoia)

- Python
Published by smoia almost 4 years ago

nigsp - 0.6.0

🚀 Enhancement

• Implement multi-index (bandpass-like) graph split #18 (@smoia)

📝 Documentation

• Add documentation structure, CLI, API, and installation. #17 (@smoia)

Authors: 1

• Stefano Moia (@smoia)

- Python
Published by smoia almost 4 years ago

nigsp - 0.5.0

🚀 Enhancement

• Handling averages of masked data better #15 (@smoia)

Authors: 1

• Stefano Moia (@smoia)

- Python
Published by smoia almost 4 years ago

nigsp - 0.4.1

🐛 Bug Fix

• Fix p value for Bernoulli's test #14 (@smoia)

Authors: 1

• Stefano Moia (@smoia)

- Python
Published by smoia almost 4 years ago

nigsp - 0.4.0

🚀 Enhancement

• Allow users to choose p value for both frequentist and Bernoulli's approach at all time. #13 (@smoia)

Authors: 1

• Stefano Moia (@smoia)

- Python
Published by smoia almost 4 years ago

nigsp - 0.3.0

💥 Breaking Change during development

• Improve random seed generator initialisation following latest recommendations and bump up required numpy version #12 (@smoia)

💻 Refactored

• Small code improvement in io.py #11 (@smoia)

Authors: 1

• Stefano Moia (@smoia)

- Python
Published by smoia almost 4 years ago

nigsp - 0.2.0

💥 Breaking Change during development

• Change name of function if_declare_force_type to change_var_type to better match its new scope. #10 (@smoia)

Authors: 1

• Stefano Moia (@smoia)

- Python
Published by smoia about 4 years ago

nigsp - 0.1.3

🐛 Bug Fix

• fix: Fix random seed initialisation (@smoia)

⚠️ Pushed to master

• docs: Fix citations (@smoia)
• docs: Fix non-pip installation instructions (@smoia)

⚠️ Tests

• Add nifti io unit tests #7 (@smoia)

🏠 Internal

• Do not save cache in CI builds (not needed) #9 (@smoia)
• Fix coverage settings to exclude tests and other minor elements #8 (@smoia)
• Fix coverage list #6 (@smoia)

Authors: 1

• Stefano Moia (@smoia)

- Python
Published by smoia about 4 years ago

nigsp - 0.1.2

⚠️ Pushed to master

• Update README.md (@smoia)

Authors: 1

• Stefano Moia (@smoia)

- Python
Published by smoia about 4 years ago

nigsp - 0.1.1

⚠️ Pushed to master

• Update README.md (@smoia)

⚠️ Tests

• Setup CircleCI for CI workflows #4 (@smoia)
• Fix break tests #2 (@smoia)

🏠 Internal

• Add short documentation in README and mailmap #5 (@smoia)

Authors: 1

• Stefano Moia (@smoia)

- Python
Published by smoia about 4 years ago

nigsp - 0.1.0

:tada: This release contains work from a new contributor! :tada:

Thank you, Stefano Moia (@smoia), for all your work!

🚀 Enhancement

• Update auto configuration and enable CD workflows #1 (s.moia@bcbl.eu @smoia)

⚠️ Pushed to master

• Fix internal settings (s.moia@bcbl.eu)
• Fix matrices loading (s.moia@bcbl.eu)
• Remove initial check on var (s.moia@bcbl.eu)
• Fix tests (s.moia@bcbl.eu)
• Improve data interpretation (s.moia@bcbl.eu)
• Fix node strength computation (s.moia@bcbl.eu)
• Fix extension check (s.moia@bcbl.eu)
• Fix testdir (s.moia@bcbl.eu)
• Fix integration test and add configuration (s.moia@bcbl.eu)
• Improve markerplot creation and force nilearn to be at least 0.7 (s.moia@bcbl.eu)
• Add markerplot plot as a block (s.moia@bcbl.eu)
• Fix markerplot creation and add plot of masked metrics (s.moia@bcbl.eu)
• Fix matrix export (s.moia@bcbl.eu)
• Workflow debug, plot metric nodes, improve logger (s.moia@bcbl.eu)
• Improve plot log text (s.moia@bcbl.eu)
• Generalise functions by allowing 4+ dimensions to be worked with (s.moia@bcbl.eu)
• Fix statistical tests and improve logging (s.moia@bcbl.eu)
• Fix surrogate creation for 3+D (s.moia@bcbl.eu)
• Fix atlas unfolding (s.moia@bcbl.eu)
• Set default metric average to False (s.moia@bcbl.eu)
• Fix metric calculation in objects (s.moia@bcbl.eu)
• Fix log messages in io (s.moia@bcbl.eu)
• Add seed and fix surrogates flags (s.moia@bcbl.eu)
• Fix GSDI export (s.moia@bcbl.eu)
• Debug 2 (s.moia@bcbl.eu)
• Fix outdir path generation when missing input (s.moia@bcbl.eu)
• Fix integration import (s.moia@bcbl.eu)
• Change workflow script name to avoid python confusions (s.moia@bcbl.eu)
• Fix commonpath attribution (s.moia@bcbl.eu)
• Ignore idea folder (s.moia@bcbl.eu)
• Debug 1 (s.moia@bcbl.eu)
• Add optional arguments in CLI (s.moia@bcbl.eu)
• Fix imports (s.moia@bcbl.eu)
• Fix message (s.moia@bcbl.eu)
• Add integration test (s.moia@bcbl.eu)
• Update p value (s.moia@bcbl.eu)
• Update name! (s.moia@bcbl.eu)
• Fix statistical test (s.moia@bcbl.eu)
• Fix fourier transformation (s.moia@bcbl.eu)
• Remove some action comments (s.moia@bcbl.eu)
• Remove unused imports (s.moia@bcbl.eu)
• Other minor fixes and check inputs in workflows (s.moia@bcbl.eu)
• !!! Fix graph projection creation and change name to fourier transform (s.moia@bcbl.eu)
• Add more tests and test files (s.moia@bcbl.eu)
• Add parser (s.moia@bcbl.eu)
• Little export progresses (s.moia@bcbl.eu)
• Main development (s.moia@bcbl.eu)
• More internal settings, start workflow (s.moia@bcbl.eu)
• Bunch of internal settings (s.moia@bcbl.eu)
• Initial commit (@smoia)

Authors: 2

• smoia (s.moia@bcbl.eu)
• Stefano Moia (@smoia)

- Python
Published by smoia about 4 years ago