BioTIMEr

BioTIME package

https://github.com/biotimehub/biotimer

Science Score: 39.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
✓
DOI references
Found 2 DOI reference(s) in README
○
Academic publication links
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Academic email domains
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (12.9%) to scientific vocabulary

Keywords

ecology geospatial r r-package rstats

Last synced: 9 months ago · JSON representation

Repository

BioTIME package

Basic Info

Host: GitHub
Owner: bioTIMEHub
License: other
Language: R
Default Branch: main
Homepage: https://biotimehub.github.io/BioTIMEr/
Size: 28.7 MB

Statistics

Stars: 7
Watchers: 4
Forks: 2
Open Issues: 2
Releases: 3

Topics

ecology geospatial r r-package rstats

Created almost 3 years ago · Last pushed 10 months ago

Metadata Files

Readme Changelog License Codemeta

BioTIMEr

BioTIMEr is an R package which gives you functions to work with BioTIME communities and provides an subset of the BioTIME database.

BioTIME (the Global database of assemblage time series for quantifying and understanding biodiversity change) is an international network and an open access database, free to anyone, anywhere in the world to use for education, research, and conservation.

For a complete description of the database, please refer to our open access publication entitled BioTIME 2.0: Expanding and Improving a Database of Biodiversity Time Series.

Installation

r install.packages("BioTIMEr") # CRAN version

r remotes::github_install("bioTIMEHub//BioTIMEr") # dev version

Getting Started

Most BioTIME users are interested in standardising the extent of the datasets. Here using the data subset included inside the package.

r library(BioTIMEr) gridding(BTsubset_meta, BTsubset_data)

A likely following step would be to rarefy communities to a common sampling effort.

r gridding(BTsubset_meta, BTsubset_data) |> resampling("ABUNDANCE")

Citation

Under the terms of the BioTIME data user agreement, users who download data agree to cite a DOI.

Please also cite BioTIMEr by running citation(package = "BioTIMEr").

Meta

Please report any issues or bugs.
License: MIT
Get citation information for BioTIMEr in R doing citation(package = 'BioTIMEr')

Owner

Name: BioTIME
Login: bioTIMEHub
Kind: organization
Location: St Andrews, UK

Repositories: 2
Profile: https://github.com/bioTIMEHub

We're a lab based at the University of St Andrews investigating diversity from macroecological and reef ecosystem perspectives.

CodeMeta (codemeta.json)

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GitHub Events

Total

Issues event: 1
Watch event: 2
Delete event: 3
Issue comment event: 4
Push event: 22
Pull request event: 6
Create event: 2

Last Year

Issues event: 1
Watch event: 2
Delete event: 3
Issue comment event: 4
Push event: 22
Pull request event: 6
Create event: 2

Packages

Total packages: 1
Total downloads:
- cran 278 last-month

Total dependent packages: 0
Total dependent repositories: 0
Total versions: 3
Total maintainers: 1

cran.r-project.org: BioTIMEr

Tools to Use and Explore the 'BioTIME' Database

Homepage: https://github.com/bioTIMEHub/BioTIMEr
Documentation: http://cran.r-project.org/web/packages/BioTIMEr/BioTIMEr.pdf
License: MIT + file LICENSE
Latest release: 0.2.4
published 12 months ago

Versions: 3
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 278 Last month

Rankings

Dependent packages count: 28.0%

Dependent repos count: 36.0%

Average: 49.7%

Downloads: 85.1%

Maintainers (1)

alban.sagouis@idiv.de

Last synced: 10 months ago

Dependencies

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r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
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.github/workflows/pkgdown.yaml actions

JamesIves/github-pages-deploy-action v4.4.1 composite
actions/checkout v3 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
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.github/workflows/test-coverage.yaml actions

actions/checkout v3 composite
actions/upload-artifact v3 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

DESCRIPTION cran

R >= 3.5.0 depends
checkmate * imports
dggridR * imports
dplyr * imports
ggplot2 * imports
tidyr * imports
vegan * imports
knitr * suggests
maps * suggests
rmarkdown * suggests
testthat >= 3.0.0 suggests
vdiffr * suggests

.devcontainer/Dockerfile docker

rocker/tidyverse devel build

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

BioTIMEr

Science Score: 39.0%

Keywords

Repository

Basic Info

Statistics

Topics

Metadata Files

README.md

BioTIMEr

Installation

Getting Started

Citation

Meta

Owner

CodeMeta (codemeta.json)

GitHub Events

Total

Last Year

Packages

cran.r-project.org: BioTIMEr

Rankings

Maintainers (1)

Dependencies