GEOS

GEOS: A performance portable multi-physics simulation framework for subsurface applications - Published in JOSS (2024)

https://github.com/geos-dev/geos

Science Score: 95.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
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.zenodo.json file
Found .zenodo.json file
✓
DOI references
Found 1 DOI reference(s) in JOSS metadata
✓
Academic publication links
Links to: zenodo.org
✓
Committers with academic emails
43 of 121 committers (35.5%) from academic institutions
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Institutional organization owner
✓
JOSS paper metadata
Published in Journal of Open Source Software

Keywords

carbon-storage geomechanics gpu hpc llnl reservoir-simulation

Keywords from Contributors

mesh

Scientific Fields

Mathematics Computer Science - 63% confidence

Last synced: 4 months ago · JSON representation

Repository

GEOS Simulation Framework

Basic Info

Host: GitHub
Owner: GEOS-DEV
License: lgpl-2.1
Language: C++
Default Branch: develop
Homepage:
Size: 583 MB

Statistics

Stars: 248
Watchers: 30
Forks: 97
Open Issues: 331
Releases: 5

Topics

carbon-storage geomechanics gpu hpc llnl reservoir-simulation

Created over 7 years ago · Last pushed 4 months ago

Metadata Files

Readme Contributing License Code of conduct Citation Codeowners

Welcome to the GEOS project!

GEOS is a simulation framework for modeling coupled flow, transport, and geomechanics in the subsurface. The code provides advanced solvers for a number of target applications, including - carbon sequestration, - geothermal energy, - and similar systems.

A key focus of the project is achieving scalable performance on current and next-generation high performance computing systems. We do this through a portable programming model and research into scalable algorithms.

You may want to browse our publications page for more details on the HPC, numerics, and applied engineering components of this effort.

Documentation

Please visit the Main documentation for GEOS.

If you would like to contribute to GEOS, please see the developer guide

If you would like to report a bug, please submit an issue.

Who develops GEOS?

GEOS is an open source project and is developed by a community of researchers at several institutions. The bulk of the code has been written by contributors from four main organizations: - Lawrence Livermore National Laboratory, - Stanford University, - TotalEnergies, - Chevron

See our authors and acknowledgements page for more details.

How does GEOS relate to the earlier GEOS code?

GEOS is the offshoot of an earlier code developed at LLNL also called GEOS. The new code differs from our previous efforts in two important ways: - This new code GEOS uses a fundamentally different programming model to achieve high performance on the complicated chip architectures common on today's HPC systems. This code is ready for exascale-class systems as they are delivered. - The new code has been released as an open-source effort to encourage collaboration within the research and industrial community. See the release notes below for details of the LGPL 2.1 License that has been adopted.

Release

For release details and restrictions, please read the LICENSE file.

For copyrights, please read the COPYRIGHT file.

For contributors, please read the CONTRIBUTORS file.

For acknowledgements, please read the ACKNOWLEDGEMENTS file.

For notice, please read the NOTICE file.

LLNL-CODE-812638 OCEC-18-021

Owner

Name: GEOS
Login: GEOS-DEV
Kind: organization

Repositories: 1
Profile: https://github.com/GEOS-DEV

GEOS Simulation Framework

JOSS Publication

GEOS: A performance portable multi-physics simulation framework for subsurface applications

Published

October 10, 2024

DOI

10.21105/joss.06973

Volume 9, Issue 102, Page 6973

Authors

Randolph R. Settgast

Lawrence Livermore National Laboratory, USA

Ryan M. Aronson

TotalEnergies E&P Research & Technology, USA, Stanford University, USA

Julien R. Besset
Inria, Universite de Pau et des Pays de l’Adour

Andrea Borio

Politecnico di Torino, Italy

Quan M. Bui

Lawrence Livermore National Laboratory, USA

Thomas J. Byer
Lawrence Livermore National Laboratory, USA

Nicola Castelletto

Lawrence Livermore National Laboratory, USA

Aurélien Citrain

Inria, Universite de Pau et des Pays de l’Adour

Benjamin C. Corbett

Lawrence Livermore National Laboratory, USA

James Corbett
Lawrence Livermore National Laboratory, USA

Philippe Cordier

TotalEnergies E&P Research & Technology, USA

Matthias A. Cremon

Lawrence Livermore National Laboratory, USA

Cameron M. Crook

Lawrence Livermore National Laboratory, USA

Matteo Cusini

Lawrence Livermore National Laboratory, USA

Fan Fei

Lawrence Livermore National Laboratory, USA

Stefano Frambati

Inria, Universite de Pau et des Pays de l’Adour

Jacques Franc

Stanford University, USA

Andrea Franceschini

Stanford University, USA

Matteo Frigo

Stanford University, USA

Pengcheng Fu

Lawrence Livermore National Laboratory, USA

Thomas Gazzola

TotalEnergies E&P Research & Technology, USA

Herve Gross

TotalEnergies E&P Research & Technology, USA

Francois Hamon

TotalEnergies E&P Research & Technology, USA

Brian M. Han

Lawrence Livermore National Laboratory, USA

Yue Hao

Lawrence Livermore National Laboratory, USA

Rasim Hasanzade
Stanford University, USA, Chevron Technical Center, USA

Michael Homel

Lawrence Livermore National Laboratory, USA

Jian Huang

TotalEnergies E&P Research & Technology, USA

Tao Jin

Lawrence Livermore National Laboratory, USA

Isaac Ju

Stanford University, USA

Dickson Kachuma
TotalEnergies E&P Research & Technology, USA

Mohammad Karimi-Fard

Stanford University, USA

Taeho Kim
TotalEnergies E&P Research & Technology, USA

Sergey Klevtsov

Stanford University, USA

Alexandre Lapene
TotalEnergies E&P Research & Technology, USA

Victor A. p. Magri

Lawrence Livermore National Laboratory, USA

Antoine Mazuyer

TotalEnergies E&P Research & Technology, USA, Stanford University, USA

Mamadou N'diaye
Stanford University, USA

Daniel Osei-Kuffuor

Lawrence Livermore National Laboratory, USA

Stefan Povolny
Lawrence Livermore National Laboratory, USA

Guotong Ren

Chevron Technical Center, USA

Shabnam J. Semnani
University of California San Diego

Chris S. Sherman

Lawrence Livermore National Laboratory, USA

Melvin Rey
Independent

Hamdi A. Tchelepi

Stanford University, USA

William R. Tobin

Lawrence Livermore National Laboratory, USA

Pavel Tomin

Chevron Technical Center, USA

Lionel Untereiner

Independent

Arturo Vargas

Lawrence Livermore National Laboratory, USA

Sohail Waziri
Stanford University, USA, Chevron Technical Center, USA

Xianhuan Wen

Chevron Technical Center, USA

Joshua A. White

Lawrence Livermore National Laboratory, USA

Hui Wu

Lawrence Livermore National Laboratory, USA

Editor

Lucy Whalley

GitHub Events

Total

Create event: 324
Commit comment event: 28
Issues event: 133
Watch event: 35
Delete event: 265
Issue comment event: 774
Push event: 4,391
Pull request review event: 1,825
Pull request review comment event: 1,524
Pull request event: 572
Fork event: 18

Last Year

Create event: 324
Commit comment event: 28
Issues event: 133
Watch event: 35
Delete event: 265
Issue comment event: 775
Push event: 4,398
Pull request review event: 1,830
Pull request review comment event: 1,527
Pull request event: 572
Fork event: 18

Committers

Last synced: 5 months ago

All Time

Total Commits: 4,311
Total Committers: 121
Avg Commits per committer: 35.628
Development Distribution Score (DDS): 0.639

Past Year

Commits: 278
Committers: 37
Avg Commits per committer: 7.514
Development Distribution Score (DDS): 0.734

Top Committers

Name	Email	Commits
Randolph R. Settgast	s**1@l**v	1,557
Christopher Sherman	s**7@l**v	318
Benjamin Curtice Corbett	c**5@l**v	313
Sergey Klevtsov	s**f@g**m	214
Francois Hamon	f**n@t**m	201
TotoGaz	4****z	154
Pavel Tomin	p****n	147
Matteo Cusini	4****M	128
Antoine Mazuyer	a**r@p**m	128
Arturo Vargas	a**9@g**m	107
Nicola Castelletto	3****1	87
Matthias	m**n@s**u	61
Brian Han	h**2@l**v	56
Dickson Kachuma	8****a	55
Jian Huang	5****1	50
Joshua White	w**0@l**v	47
Sy-Tuan Nguyen	4****n	41
William R Tobin	4****n	31
MelReyCG	1****G	29
Stefano Frambati	s**i@t**m	27
acitrain	6****n	26
hannah_mairs	h**s@g**m	25
Herve Gross	4****s	24
Xavier Lacoste	x**0@g**m	24
Herve Gross	h**s@t**m	23
Lionel Untereiner	l**r@g**m	22
Victor A. P. Magri	5****m	21
tbeltzun	1****n	21
Yue Hao	h**1@l**v	19
Andrea Franceschini	f**0@d**t	18
and 91 more...

Committer Domains (Top 20 + Academic)

llnl.gov: 11 stanford.edu: 5 quartz1154.llnl.gov: 2 quartz1916.llnl.gov: 2 quartz188.llnl.gov: 2 quartz2498.llnl.gov: 2 quartz1922.llnl.gov: 2 totalenergies.com: 2 cab687.llnl.gov: 1 quartz764.llnl.gov: 1 inria.fr: 1 geosx.org: 1 dmsa.unipd.it: 1 quartz380.llnl.gov: 1 lbl.gov: 1 quartz1538.llnl.gov: 1 quartz2306.llnl.gov: 1 quartz2300.llnl.gov: 1 geosiris.com: 1 total.com: 1 login1.ascent.olcf.ornl.gov: 1 cab670.llnl.gov: 1 cab688.llnl.gov: 1 cab690.llnl.gov: 1 quartz4.llnl.gov: 1 cab668.llnl.gov: 1 quartz1148.llnl.gov: 1 tudelft.nl: 1

Issues and Pull Requests

Last synced: 4 months ago

All Time

Total issues: 663
Total pull requests: 2,008
Average time to close issues: 9 months
Average time to close pull requests: 2 months
Total issue authors: 135
Total pull request authors: 90
Average comments per issue: 2.49
Average comments per pull request: 2.04
Merged pull requests: 1,283
Bot issues: 0
Bot pull requests: 30

Past Year

Issues: 72
Pull requests: 678
Average time to close issues: 24 days
Average time to close pull requests: 21 days
Issue authors: 41
Pull request authors: 50
Average comments per issue: 0.86
Average comments per pull request: 1.49
Merged pull requests: 344
Bot issues: 0
Bot pull requests: 19

View more stats

Top Authors

Issue Authors

rrsettgast (56)
TotoGaz (45)
paveltomin (45)
CusiniM (26)
francoishamon (23)
sytuannguyen (22)
jhuang2601 (22)
untereiner (21)
cssherman (21)
MelReyCG (20)
wrtobin (17)
klevzoff (15)
FishYNY (14)
joshua-white (13)
corbett5 (11)

Pull Request Authors

paveltomin (325)
rrsettgast (195)
CusiniM (158)
dkachuma (135)
TotoGaz (100)
francoishamon (85)
MelReyCG (58)
arng40 (53)
jhuang2601 (50)
sframba (49)
bmhan12 (46)
victorapm (45)
acitrain (41)
untereiner (38)
cssherman (37)

Top Labels

Issue Labels

type: bug (238) type: new (213) type: feature (106) type: cleanup / refactor (85) type: documentation (42) type: testing (27) EPIC (24) type: build system (19) type: dev environment (9) type: CI (6) EPIC - FF/Import (6) Theme - FF (4) changes XML input (4) ci: run integrated tests (4) Theme (3) EPIC - Mesh/PerfRobust (3) Theme - HF (3) type: optimization (2) EPIC - FF/Contact (2) type: visualization (2) ci: run CUDA builds (2) type: discussion (2) EPIC - Mesh/mesh_doctor (2) ci: ready to be merged (2) flag: ready for review (2) flag: requires rebaseline (1) flag: no rebaseline (1) ci: run code coverage (1) flag: requires updated submodule(s) (1) duplicate (1)

Pull Request Labels

ci: run integrated tests (826) ci: run CUDA builds (650) flag: requires rebaseline (445) flag: ready for review (420) flag: no rebaseline (361) ci: run code coverage (292) ci: ready to be merged (265) flag: ready to be merged (261) type: feature (253) type: bug (239) type: cleanup / refactor (201) type: documentation (113) flag: requires updated TPL(s) (54) type: build system (51) type: CI (48) type: testing (41) flag: requires updated submodule(s) (37) dependencies (32) changes XML input (32) DO NOT MERGE ! (22) type: optimization (20) flag: TPL(s) build check (10) type: pygeosx (8) spe11 (8) github_actions (7) type: dev environment (6) Theme - FF (6) EPIC - FF/Contact (6) type: new (4) ci: ready for review (4)

Packages

Total packages: 2
Total downloads: unknown

Total dependent packages: 0
(may contain duplicates)
Total dependent repositories: 0
(may contain duplicates)
Total versions: 8

proxy.golang.org: github.com/GEOS-DEV/GEOS

Documentation: https://pkg.go.dev/github.com/GEOS-DEV/GEOS#section-documentation
License: lgpl-2.1
Latest release: v1.1.0
published over 1 year ago

Versions: 4
Dependent Packages: 0
Dependent Repositories: 0

Rankings

Dependent packages count: 5.4%

Average: 5.6%

Dependent repos count: 5.8%

Last synced: 4 months ago

proxy.golang.org: github.com/geos-dev/geos

Documentation: https://pkg.go.dev/github.com/geos-dev/geos#section-documentation
License: lgpl-2.1
Latest release: v1.1.0
published over 1 year ago

Versions: 4
Dependent Packages: 0
Dependent Repositories: 0

Rankings

Dependent packages count: 5.4%

Average: 5.6%

Dependent repos count: 5.8%

Last synced: 4 months ago

Dependencies

src/coreComponents/python/modules/geosx_mesh_doctor/pyproject.toml pypi

src/coreComponents/python/modules/geosx_mesh_doctor/requirements.txt pypi

networkx >=2.4
numpy *
tqdm *
vtk >=9.1

src/coreComponents/python/modules/geosx_mesh_doctor/setup.py pypi

src/coreComponents/python/modules/geosx_mesh_tools_package/pyproject.toml pypi

src/coreComponents/python/modules/geosx_xml_tools_package/pyproject.toml pypi

src/coreComponents/python/modules/hdf5_wrapper_package/pyproject.toml pypi

src/coreComponents/python/modules/pygeosx_tools_package/pyproject.toml pypi

src/coreComponents/python/modules/timehistory_package/pyproject.toml pypi

src/docs/sphinx/requirements.txt pypi

Sphinx >=7.0.0
docutils >=0.18
h5py *
matplotlib *
mpmath *
numpy *
pandas *
scipy *
sphinx-argparse *
sphinx-design *
sphinx_rtd_theme *
sphinxcontrib-plantuml *
sphinxcontrib-programoutput >=0.17

.github/workflows/ci_tests.yml actions

actions/checkout v3 composite
google-github-actions/auth v1 composite
google-github-actions/setup-gcloud v1 composite

.devcontainer/Dockerfile docker

docker.io/geosx/ubuntu20.04-gcc10 ${GEOS_TPL_TAG} build

.github/workflows/build_and_test.yml actions

actions/checkout v3 composite
google-github-actions/auth v1 composite
google-github-actions/setup-gcloud v1 composite

GEOS

Science Score: 95.0%

Keywords

Keywords from Contributors

Scientific Fields

Repository

Basic Info

Statistics

Topics

Metadata Files

README.md

Welcome to the GEOS project!

Documentation

Who develops GEOS?

How does GEOS relate to the earlier GEOS code?

Release

Owner

JOSS Publication

GEOS: A performance portable multi-physics simulation framework for subsurface applications

Authors

Editor

Tags

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Packages

proxy.golang.org: github.com/GEOS-DEV/GEOS

Rankings

proxy.golang.org: github.com/geos-dev/geos

Rankings

Dependencies