GEOS - 1.2.0

:sparkles: New Features

• 7130462 - Augmented Lagrangian (slip and open modes) (PR #3217 by @matteofrigo5)
• 1616ea4 - minimum interval for time-step increase after time-step cut (PR #3338 by @victorapm)
• 0db85be - Log refactor - Output PVT (PR #3149 by @arng40)
  • :arrowlowerright: addresses issue #3013 opened by @MelReyCG

:bug: Bug Fixes

• eb7c6b2 - Remove shadow declarations (PR #3293 by @dkachuma)
• f9a64bb - testLifoStorage random fail on RockyLinux with clang+CUDA (PR #3362 by @sframba)

:recycle: Refactors

• 7ff2349 - mixture density computation in multiphase poromechanics solvers (PR #3342 by @castelletto1)
• 258f072 - Trying to improve adaptive linear solver tolerance selection (PR #3163 by @paveltomin)

:construction_worker: Build System

• 5368ee3 - deps: bump the github-actions group with 2 updates (PR #3324 by @dependabot[bot])
• 08d5eeb - update Mathpresso (PR #3360 by @rrsettgast)
• db0bd1c - split ci into atomic workflows (commit by @untereiner)
• 390dc3a - update to reflect recent changes (commit by @untereiner)
• 2c69a61 - test next version computation (commit by @untereiner)
• 6c4107f - draft: test next version computation in the PR (commit by @untereiner)
• 9b301e1 - draft: test release notes computation (commit by @untereiner)
• 8fbc3b9 - draft: test release notes print in terminal (commit by @untereiner)
• 77a6509 - draft: new deployment workflow (commit by @untereiner)

:memo: Documentation Changes

• c225416 - Move table titles from CompleteXMLSchema.rst to corresponding include file (PR #3321 by @ryar9534)
  • :arrowlowerright: addresses issue #3316 opened by @ryar9534

Scientific Software - Peer-reviewed - C++
Published by github-actions[bot] about 1 year ago

GEOS - v1.1.0

What's Changed

• Docs for cased wellbore with Thermal debonding by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/2515
• updated integratedTests submodule by @tbeltzun in https://github.com/GEOS-DEV/GEOS/pull/2778
• Adding an error when input temperature / pressure is out of PVT tables range by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/2552
• A review of the docs for solid constitutive models by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/2606
• Solve reappearing compilation issue on PPC machines with NVCC due to FMT bug by @sframba in https://github.com/GEOS-DEV/GEOS/pull/2759
• prevent SIGFPE in vtk by @tbeltzun in https://github.com/GEOS-DEV/GEOS/pull/2718
• Reenabling sphinx imgmath by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/2780
• Tune the hydrofrac example so that it at least runs by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2763
• Fix integratedTests failures. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2785
• Refactor fluid unit tests by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2695
• Compositional tidy up by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2661
• Add gcc compiler to nightly tests by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/2692
• Add a few solver options plus some useful output for hydrofrac solver by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2762
• Allow negative pressure by default (revert change from #2762) by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2787
• Merge SolidMechanicsStateReset into PoromechanicsInitialization to simplify users life by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2735
• Update TPL tag to point back to the HEAD of the repo by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2791
• Activate sccache in the CI/CD by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2760
• Add more context to errors - mesh/ files by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/2450
• Re-Enable anisotropic constitutive models by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/2749
• Some formulation options by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2546
• rewrite seismo traces - rework WaveSolverBase structure by @tbeltzun in https://github.com/GEOS-DEV/GEOS/pull/2729
• Remove unused variables by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2797
• Add phase composition to PVTDriver output by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2772
• Create compositional multiphase fluid by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2769
• Bugfix/crook5/mpm restart by @cmcrook5 in https://github.com/GEOS-DEV/GEOS/pull/2782
• Support wells in sequential poromechanics + 3 other PRs by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2568
• Fixes and enhancements to frac permeability models by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2757
• Reorganization of the GHA files by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2801
• Well skin factor by @kimtaeho07 in https://github.com/GEOS-DEV/GEOS/pull/2599
• Upgrade version of sccache for GPU builds by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2829
• Feature in-tree external components by @untereiner in https://github.com/GEOS-DEV/GEOS/pull/2527
• allow empty source and receivers by @tbeltzun in https://github.com/GEOS-DEV/GEOS/pull/2818
• MGR strategies cleanup by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/2409
• Use ComponentProperties in calculation functions by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2799
• add NDEBUG test - add build_test target - fix asserts by @tbeltzun in https://github.com/GEOS-DEV/GEOS/pull/2721
• More precise XML input values validation by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/2764
• Bugfix/castelletto1/mgr by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/2855
• Fix integratedTests fails. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2864
• add missing baselines updates by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2865
• Update logLevel usage in MGR by @victorapm in https://github.com/GEOS-DEV/GEOS/pull/2815
• Dissipation by @rasimHZ in https://github.com/GEOS-DEV/GEOS/pull/2660
• Bugfix: remove table path from restart files. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2869
• Run the integrated tests on GHA by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2850
• Redid ArrayOfArraysView::setCapacityOfArray to avoid move by @corbett5 in https://github.com/GEOS-DEV/GEOS/pull/2870
• Use GHA's if: instead of dedicated jobs by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2872
• A few solver messages rework by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/2783
• Implement STONE II model for three phase relperm interpolation by @jafranc in https://github.com/GEOS-DEV/GEOS/pull/2525
• Simple fixes for issues #2834 and #2839 by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2841
• Properly reactivate PVT throwing by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/2798
• A few mesh messages edit by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/2844
• Fix Issue #2833 and #2755 by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/2859
• Remove value only compute method from fluid models by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2802
• Enhance the fracture generation feature of mesh_doctor by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2793
• Updating error checking in python setup script by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/2825
• Disable auto updating of docs/doxygen/GeosxConfig.hpp by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/2602
• Cleanup compositional fluid model by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2812
• IO: filter mesh levels for VTK by @tbeltzun in https://github.com/GEOS-DEV/GEOS/pull/2723
• Fixes for brine density computes, output internally constructed PVT tables for CO2 fluid into CSV files by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2792
• Fix issues #2837 and #2838 by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2843
• Address the issue #2407 by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/2809
• Fix issue #2882 by using output dir in wells rates output by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2884
• fix elastic seismos bug by @tbeltzun in https://github.com/GEOS-DEV/GEOS/pull/2849
• SourceFlux & RegionStatistics crash fixes by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/2842
• Fix Rachford-Rice solver by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2854
• Fix minCompDens by @victorapm in https://github.com/GEOS-DEV/GEOS/pull/2889
• Gitlab CI - cleanup untracked files by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/2892
• Computing next time-step size from CFL by @jafranc in https://github.com/GEOS-DEV/GEOS/pull/2600
• Aitken relaxation on averageMeanTotalStressIncrement by @sohailwaziri in https://github.com/GEOS-DEV/GEOS/pull/2628
• Revert target region check accidentally commented in #2568 by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2893
• Simulation duration output fix + timestep separator by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/2877
• RAJA loop_exec deprecated for seq_exec by @wrtobin in https://github.com/GEOS-DEV/GEOS/pull/2890
• Define a single quadrature point for FaceElements by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2784
• Include water vapourisation in CO2/Brine flash by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2811
• Time step cut support for sequential solver by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2861
• acoustic - elastic coupling (SEM, 2ⁿᵈ order wave equation) by @tbeltzun in https://github.com/GEOS-DEV/GEOS/pull/2813
• Fix issue #2871 by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2916
• Poromechanics solvers cleanup by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2913
• fix multiple tutorial problems by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/2920
• Some random flow solver cleanup by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2921
• Correct errors in wave propagation xml files by @sframba in https://github.com/GEOS-DEV/GEOS/pull/2911
• Fix a typo in Example2.rst by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/2931
• Fix compilation issues and PVT Driver unit test on Pangea3 by @sframba in https://github.com/GEOS-DEV/GEOS/pull/2910
• Updating paths to data repo by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/2934
• Fix function interface for poroVisoPlastic models by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/2696
• Fix the naming of the fluid heat capacity by @frankfeifan in https://github.com/GEOS-DEV/GEOS/pull/2924
• generate code coverage reports by @tbeltzun in https://github.com/GEOS-DEV/GEOS/pull/2738
• Add action trigger for push to develop by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2943
• Migrate python packages by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/2896
• Apply min comp dens treatment for initial conditions by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2938
• More single phase outputs by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/2904
• Poroelastic frac propagation criterion: use total stress to compute force balance. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2706
• Add csv output also for singe phase flow and unify a bit between different statistics outputs by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2914
• Fix for black oil by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2937
• Misc cleanup of CI and README by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2944
• Use LvArray::math functions by @untereiner in https://github.com/GEOS-DEV/GEOS/pull/2927
• Spack Update by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/2028
• find bug with ci tests on develop by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2948
• Run cuda jobs for develop CI by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2949
• add workflow_dispatch option to actions by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2951
• 2nd attempt to fix develop CI runs by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2950
• Make useSimpleAccumulation=1 default for isothermal by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2942
• Add log for opened deck filepath by @arng40 in https://github.com/GEOS-DEV/GEOS/pull/2932
• Fix the black oil case by tightening the nonlinear tolerance by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2955
• Add a VTK well import by @untereiner in https://github.com/GEOS-DEV/GEOS/pull/2551
• Improve SinglePhasePoromechanicsEmbeddedFractures and introduce SinglePhasePoromechanicsConformingFractures MGR strategy by @victorapm in https://github.com/GEOS-DEV/GEOS/pull/2747
• Use output dir (option "-o") for printing out PVT tables by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2946
• Update LvArray by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2956
• Improve linear solver for compositional flow runs by @victorapm in https://github.com/GEOS-DEV/GEOS/pull/2928
• Add HYPRE warning by @victorapm in https://github.com/GEOS-DEV/GEOS/pull/2907
• Optimization of higher-order Gauss-Lobatto kernels by @sframba in https://github.com/GEOS-DEV/GEOS/pull/2894
• Print Hypre preconditioner setup error by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2935
• Change code coverage CI VM to 4 core - 16 GB by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2978
• Activate water vapourisation table by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2941
• Contact mechanics (conforming) input files by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/2970
• use streak.llnl.gov as runner for GHA by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2873
• Adding strain integration option for DAS measurement in the elastic wave propagator by @sframba in https://github.com/GEOS-DEV/GEOS/pull/2612
• add pragmas to supress warnings associated with compiler bugs by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2983
• Fix guards for gcc warning pragmas by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2986
• Make possible to provide input PVT tables instead of internally computed by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2919
• Out of place ATS by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/2964
• Implement Quasi-Newton for HF problems by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2541
• Refactor wave solver files: Split field namespace for each physics by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/2947
• Adding Sherlock GPU to CI tests by @matteofrigo5 in https://github.com/GEOS-DEV/GEOS/pull/2977
• Do two equal time steps instead of one big one small by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2987
• Fix typo causing nuerical instability with Elastic Wave propagator by @sframba in https://github.com/GEOS-DEV/GEOS/pull/2990
• Solution increments convergence criteria for sequential solver by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2866
• Refactor contact solvers using inheritance from a SolidMechanics solver by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2967
• Remove rock from fracture materialList in HydrofractureSolver by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2994
• Update bulk (mixture) density after mechanics sequential solve by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2875
• Regions for sequential poromechanics solver by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2897
• Uniaxial in fixed stress by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2906
• injection example fix by @arng40 in https://github.com/GEOS-DEV/GEOS/pull/2933
• Support sequential in SinglePhasePoromechanicsConformingFractures by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3007
• Bugfix: min vs lowest by @joshua-white in https://github.com/GEOS-DEV/GEOS/pull/3034
• Get cpu integrated tests running on streak. by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2991
• Load pretty printers for LvArray in codespace by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/3022
• Correct METIS version by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/3028
• Remove wrong zero diag check by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3033
• Fixes spikes when importing fractures in parallel by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/3020
• Optimization of the construction of high-order mesh maps by @sframba in https://github.com/GEOS-DEV/GEOS/pull/2731
• Fix "status 137" error on streak by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3042
• Allow building GEOS with clang >= 15 by @tbeltzun in https://github.com/GEOS-DEV/GEOS/pull/3024
• Implement Spycher-Pruess solubility tables by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2820
• Make dependabot watch github-actions updates by @untereiner in https://github.com/GEOS-DEV/GEOS/pull/2962
• Reassess include of the mesh generators by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/3038
• Implementing hybrid upwinding for total velocity schemes by @jafranc in https://github.com/GEOS-DEV/GEOS/pull/2394
• Replace resultof of invokeresult to fix macOS compilation. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3046
• Modifying rst table type names by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/3040
• Node/cell ordering in InternalMesh by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/2881
• Initialization of fields in new fracture cells in HydroFracture solver by @frankfeifan in https://github.com/GEOS-DEV/GEOS/pull/2960
• Small fix in SinglePhasePoromechanicsConformingFractures MGR strategy by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3047
• Fix solubility message by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/3048
• Refactor wave solvers: separation of time and space update inside wave solvers by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/2989
• documentation for VTKWell by @untereiner in https://github.com/GEOS-DEV/GEOS/pull/2963
• acoustic / elastic solver updates by @tbeltzun in https://github.com/GEOS-DEV/GEOS/pull/3027
• Refactor wave solvers: move mass + damping matrix and PML inside dedicated files by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/2995
• Refactor wave solvers: Move sources and receivers routine inside a dedicated file by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/3032
• Minor include cleanup for flow solvers by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3064
• PVT & TPL error message rewrite by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/2929
• Fix broken compilation on Pangea3 by @sframba in https://github.com/GEOS-DEV/GEOS/pull/3070
• Make sequential poromechanics to conserve mass by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2952
• Freeze porosity when doing poromechanics initialization by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3056
• update tpls tag and lvarray. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3087
• Simplify poromechanics initialization setup by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3058
• Unify convergence check for lagrange-contact solvers by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3049
• Update default hypre parameters by @victorapm in https://github.com/GEOS-DEV/GEOS/pull/3066
• fix blas lapack links for tests by @herve-gross in https://github.com/GEOS-DEV/GEOS/pull/2685
• specify self hosted runner labels explicitly by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3097
• Small clean up for SinglePhasePoromechanicsEmbeddedFractures by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3093
• Fix inconsistencies between serial and parallel conforming fracs run + add new output fields. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3065
• Stabilized Fixed-Stress by @ryar9534 in https://github.com/GEOS-DEV/GEOS/pull/3092
• Enable CI testing on streak2 by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3090
• Check that useStaticCondensation is not enabled when running SinglePhasePoromechanicsEmbeddedFractures by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3099
• Neumann instead of Dirichlet boundary for 2nd order elastic wave free surface condition by @sframba in https://github.com/GEOS-DEV/GEOS/pull/3072
• Change Unsupported doc tag to Best effort by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/3102
• Separate stick, slip, open parts of contact residual and try to normalize them properly by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3059
• Refactoring wave solver: new folder organization by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/3074
• add penalty contact for hydraulic fracturing in poroelastic materials. by @Guotong-Ren in https://github.com/GEOS-DEV/GEOS/pull/3096
• Make optional builds re-runnable on CI by @ryar9534 in https://github.com/GEOS-DEV/GEOS/pull/3094
• Link compositional fluid model to static function implementation by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2879
• Update MultiphasePoromechanics strategy by @victorapm in https://github.com/GEOS-DEV/GEOS/pull/3098
• Fix setMGRStrategy logic for SinglePhaseReservoirAndWells by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3111
• Update integrated test baseline storage by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/3044
• Bump the github-actions group with 3 updates by @dependabot in https://github.com/GEOS-DEV/GEOS/pull/3106
• Additional use of streak2 for CI testing by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3103
• Feature/byer3/mass inj const by @tjb-ltk in https://github.com/GEOS-DEV/GEOS/pull/2917
• fix bug in ci script by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3115
• Bugfix/byer3/internal energy der 3053 by @tjb-ltk in https://github.com/GEOS-DEV/GEOS/pull/3105
• Clean up catalogName a bit by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3110
• Small cleanup for flow solvers by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3114
• Add a pressure-dependent permeability model and calculate the transmissibility derivatives by @frankfeifan in https://github.com/GEOS-DEV/GEOS/pull/3086
• Document how to debug CI through ssh. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2975
• Make integratedTests job mandatory on CI. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3118
• Feature/seismicity rate solver by @kimtaeho07 in https://github.com/GEOS-DEV/GEOS/pull/2593
• Elastic Vertical Transverse Isotropic (VTI) wave solver implementation by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/3060
• Add the function to update the pressure gradient in the hybrid solver by @frankfeifan in https://github.com/GEOS-DEV/GEOS/pull/2110
• Fix missing const for int conversion of CommID by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/3122
• Upgrade the version of plantuml by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/3124
• Change uberenv repo to relative path by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3127
• Register pressureGradient only for hybrid FVM (single phase) by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3125
• Modified label used to run cuda jobs by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3131
• Store baselines locally on streak2. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3141
• Spatially-varying grain bulk modulus within a region. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3050
• Fix bug when we take minTime < 0 in wave solvers by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/3158
• Log refactor - Table logging features by @arng40 in https://github.com/GEOS-DEV/GEOS/pull/2984
• add stress initialization for hydrofracture solver by @Guotong-Ren in https://github.com/GEOS-DEV/GEOS/pull/3150
• Activate fluid models by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/3123
• Add the command for running uncrustify style to the Doc by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/3151
• Fix updateConfiguration by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3113
• Add missing tests into ATS and adjust output naming by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3120
• Introduce configuration tolerance by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3075
• Compilation failure on pangea-3 if ENABLE_CUDA is OFF by @Algiane in https://github.com/GEOS-DEV/GEOS/pull/3129
• Viscoelastic wave propagator by @sframba in https://github.com/GEOS-DEV/GEOS/pull/3080
• Break up multi fluid test by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/3140
• Properly sync nonlinear solver params for coupled solver by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3138
• remove RESQML support from GEOS by @untereiner in https://github.com/GEOS-DEV/GEOS/pull/2969
• Some random things by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3152
• Only consider 3d cells in fracture to matrix mappings by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2887
• Add Pangea4 host configs by @Bubusch in https://github.com/GEOS-DEV/GEOS/pull/3081
• run integrated tests on dedicated runner to avoid overloading of streak2 by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3171
• Preparatory work for fractures + wells by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3021
• Adding SourceFluxStatistics by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/2954
• Allow extra parameters for fluid models by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/3157
• Force face-based ordering for node list of FaceElements by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3133
• Adding pressure stabilization for single phase poromechanics by @ryar9534 in https://github.com/GEOS-DEV/GEOS/pull/3100
• Add linear solver params table output by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3164
• Implement Temperature-dependent Solid Volumetric Heat Capacity by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/3088
• Small bug fix by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3165
• Code cleanup by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3168
• Two experimental options for compositional flow solver by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3160
• Augmented Lagrangian (stick mode) - InterfaceKernelBase - Bubble Functions by @matteofrigo5 in https://github.com/GEOS-DEV/GEOS/pull/3130
• Remove integratedTests as a submodule for codespaces by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/3176
• Fix tutorial example for thermal debonding wellbore problem by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/3170
• Adding field to output total strain by @ryar9534 in https://github.com/GEOS-DEV/GEOS/pull/3142
• Python Packaging Updates by @untereiner in https://github.com/GEOS-DEV/GEOS/pull/3057
• update LvArray for adding freeOnDevice() function by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3183
• Replace paid runners with streak2 by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3184
• Fix unit tests on GPU CI platform. by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2985
• Bump the github-actions group across 1 directory with 3 updates by @dependabot in https://github.com/GEOS-DEV/GEOS/pull/3186
• Decouple debug matrix output from logLevel by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3181
• Implement stability test by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/3136
• Extend BLAS interface by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/3173
• Fix #3146 - Error in stat reduction for Function triggered PeriodicEvent by @jafranc in https://github.com/GEOS-DEV/GEOS/pull/3147
• HDF5 Collective Operations Flags by @wrtobin in https://github.com/GEOS-DEV/GEOS/pull/3177
• Bugfix/fix issue 2853 with flag by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3196
• Fix compilation warnings. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3190
• Update rst files and schema by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3195
• style: Rename postProcessInput > postInputInitialization by @wrtobin in https://github.com/GEOS-DEV/GEOS/pull/3198
• Implemented face-based lagrange contact solver with VEM by @IsaacJu-debug in https://github.com/GEOS-DEV/GEOS/pull/3006
• Remove array1d inside kernels by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3201
• Umpire logs refactor - table output + adding percentages by @arng40 in https://github.com/GEOS-DEV/GEOS/pull/3052
• Host configs for new LLNL machines + cuda12 by @victorapm in https://github.com/GEOS-DEV/GEOS/pull/3067
• update LvArray submodule hash by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3208
• Remove EOS template parameter from compositional fluid model by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/3166
• Disable generation of globalIDs in GEOS for fracture meshes by @ryar9534 in https://github.com/GEOS-DEV/GEOS/pull/3200
• Remove unnecessary constitutiveUpdatePassThru by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/3204
• docs: Fixing python scripts in tutorials by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/3211
• ci: Check that PR title follows conventional commit prefix by @untereiner in https://github.com/GEOS-DEV/GEOS/pull/3043
• fix: Check for existence of_ SCAVPHYSPAGES to fix MacOS compilation. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3207
• feat: enable CODEOWNERS by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3205
• fix: Use aperture table in poromechanics with conforming fractures by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3194
• chore: update trilinos, hypre and fmt. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3214
• docs: Update the documentation with conventional commit prefixes by @untereiner in https://github.com/GEOS-DEV/GEOS/pull/3220
• docs: update publications by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/3216
• fix: Bugfix/semantic pull request fix by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3221
• fix: another shot to fix workflow by @untereiner in https://github.com/GEOS-DEV/GEOS/pull/3225
• chore: Update blt, RAJA, CHAI, Caliper, adiak, conduit by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3218
• chore: Change GEOSX to GEOS in a bunch of places by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3219
• refactor: Add component selector for fluid models by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/3213
• ci: Update CODEOWNERS by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3240
• refactor: Towards modularization of physicsSolver by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3239
• feat: Check pore volume for all element types by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3233
• refactor: fix creation of mass handling. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3215
• docs: Fix wrong variable names in doc after PR #3219 (GEOSX_ -> GEOS_). by @Algiane in https://github.com/GEOS-DEV/GEOS/pull/3242
• fix: Fix link flags after pr#3219 by @Algiane in https://github.com/GEOS-DEV/GEOS/pull/3244
• chore: Add myself to constitutive by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3238
• feat: Add partition information to terminal output by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3246
• refactor: change MPICOMMGEOSX to MPICOMMGEOS everywhere by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3259
• chore: Update hypre by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3261
• fix: Fix segfault in table by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3268
• fix: robust point location for degenerate configurations by @sframba in https://github.com/GEOS-DEV/GEOS/pull/3202
• refactor: Remove circular dependencies from fileIO/common/codingutilities by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/3247
• fix: testUnits failure on MacOS by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3269
• feat: Transmissibility output by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/3091
• fix: fix linking error on mac by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3270
• refactor: separate friction and hydraulic aperture - stress relation. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3197
• fix: Fix cibadge in Readme. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3265
• fix: Update LvArray submodule by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3277
• refactor: Remove "using namespace" in header files by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3255
• docs: change GEOSX to GEOS in documentation by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3275
• chore: Changing GEOSX to GEOS in external mesh import by @ryar9534 in https://github.com/GEOS-DEV/GEOS/pull/3278
• docs: stressandpressure_initialization by @Oluwatobi-PM in https://github.com/GEOS-DEV/GEOS/pull/3249
• chore: add a few comments and small code fixes in addTransmissibilityCouplingPattern for poromechanics with conforming fractures by @ryar9534 in https://github.com/GEOS-DEV/GEOS/pull/3250
• build: Remove remaining circular link dependencies by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3282
• docs: fix python script for a tutorial example by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/3284
• refactor: Reuse computeSinglePhaseFlux by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3283
• refactor: Use matrix-matrix interface in LAPACK solve by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/3234
• feat: Use stability test in flash by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/3206
• feat: Add kernel callable dense LA solvers for small systems. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3287
• feat: add log at the end of the timestep with substeps info. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3303
• fix: add install commands to component libraries by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3307
• fix: reenable floating point exceptions by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3300
• feat: Add immiscible water flash model by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/3237
• docs: Update COPYRIGHT by @herve-gross in https://github.com/GEOS-DEV/GEOS/pull/3317
• docs: apply suggestions from joss review by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3296
• docs: update publications and fix a link by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/3304
• fix: Bug with elastic wave propagator at higher orders by @sframba in https://github.com/GEOS-DEV/GEOS/pull/3294
• fix: Small fix by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3308
• feat: Temperature dependent single phase thermal conductivity by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/3135
• fix: Fix restart issue when running HydroFracture cases. by @frankfeifan in https://github.com/GEOS-DEV/GEOS/pull/3302
• fix: Add some initialisation to class members by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/3323
• chore: update codeowners for integrated_tests.yaml by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3333
• feat: print out fracture state for contact model by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/3322
• docs: edits from joss review by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3332
• fix: update schema docs from previous PR's that forgot to generate the updates by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3341
• chore: Update quick-start-template.cmake by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3326
• chore: increase minimum required cmake version. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3331
• ci: Disable trigger of ci jobs when description is edited by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3346
• fix: Check for zero permeability in J-function cap pressure by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/3320
• fix: Fix the sphinx errors present in the readthedocs log by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3343
• fix: fix rockylinux jobs and activate them. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3336
• ci: add the possitility to use other build generators than ninja inside the ci by @Algiane in https://github.com/GEOS-DEV/GEOS/pull/3276
• fix: modify and reactivate SeismicityRate poroelastic integrated test. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/3318
• docs: avoid offline documentation generation by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3350
• docs: Generating sphinx datastructure tables on the fly by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/3344
• docs: replace the word explosion with seismic charge by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3354
• ci: Time-saving version of PR #3159 that adds Pangea3 job with ppc emulation by @Algiane in https://github.com/GEOS-DEV/GEOS/pull/3340
• docs: scripts for user/commit stats by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/3357

New Contributors

• @kimtaeho07 made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/2599
• @rasimHZ made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/2660
• @arng40 made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/2932
• @matteofrigo5 made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/2977
• @Guotong-Ren made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/3096
• @dependabot made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/3106
• @tjb-ltk made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/2917
• @Algiane made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/3129
• @Bubusch made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/3081
• @Oluwatobi-PM made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/3249

Full Changelog: https://github.com/GEOS-DEV/GEOS/compare/v1.0.1...v1.1.0

Scientific Software - Peer-reviewed - C++
Published by rrsettgast over 1 year ago

GEOS - v1.0.1

What's Changed

• Fix potential difference calculations in molar variables by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1228
• Unit testing on Lassen - Laplace2D with serial direct solver by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1239
• Compile mathpresso targets iff mathpresso option is requested. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1246
• Improving lagrangian contact mechanics solver + LAI capabilities by @andrea-franceschini in https://github.com/GEOS-DEV/GEOS/pull/986
• change workflow documentation by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/1244
• Provide docker solution to docker restriction by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1247
• Adding an mesh tools python package for GEOSX by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/1224
• Improvements to EFEM solver. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1147
• LC Spack Support by @corbett5 in https://github.com/GEOS-DEV/GEOS/pull/1204
• Fixed bug in averageOverSecondDim with 1D arrays. by @corbett5 in https://github.com/GEOS-DEV/GEOS/pull/1250
• Implemented dispatch for mimetic inner product selection by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1190
• WIP - Add Debug CUDA build to Travis CI by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/1252
• Updates to Phase-Field Fracture - Stress Decomposition and Nonlinear Degradation Functions by @andrembcosta in https://github.com/GEOS-DEV/GEOS/pull/1144
• config-build works with Python3 by @corbett5 in https://github.com/GEOS-DEV/GEOS/pull/1251
• Fixed bug related to matching perforations to reservoir elements by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1206
• Fixed bug linking to system tpls. by @corbett5 in https://github.com/GEOS-DEV/GEOS/pull/1265
• Fix missing blob on GCP by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1276
• Virtual Element Method by @andrea-borio in https://github.com/GEOS-DEV/GEOS/pull/1220
• Travis Cuda Clang Debug Build by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/1270
• Fixing wrong buffer in test. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1281
• Re-enable pinned memory. by @corbett5 in https://github.com/GEOS-DEV/GEOS/pull/1283
• Update Hypre and CHAI TPLs by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/1282
• Fix to default destructor missing by @herve-gross in https://github.com/GEOS-DEV/GEOS/pull/1268
• Correct a typo: sparisty by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/1271
• Using clang-tidy to correct legacy namings by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1286
• Removed Doxygen warnings on Quartz by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1293
• Minor cameBack correction by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1294
• fix incorrectly reverted LvArray submodule by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/1295
• Bugfix/sytuan/pangea build by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/1253
• Remove redundant member variables in LaplaceFEM solver by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/1298
• Apply renaming to function calls from Petsc LAI by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1300
• Fix to boundedPlane to avoid missing some embedded elements. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1304
• Replace std::string with string by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/1301
• Updating publications.rst by @joshua-white in https://github.com/GEOS-DEV/GEOS/pull/1287
• Fixed crash in SinglePhaseFVM with wells and fractures by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1306
• Apply renaming to update functions in CompositionalMultiphaseFlowKernels by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1310
• Modified well controls to match Intersect results by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1202
• Update TPL by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1314
• Update TPL by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1315
• Update submodule BLT to v0.3.6 by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1316
• Improve logs when product is not found in catalog. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1305
• Python interface by @corbett5 in https://github.com/GEOS-DEV/GEOS/pull/1068
• Poroelasticity with embedded fractures by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1229
• Adding Drucker-Prager plasticity model by @joshua-white in https://github.com/GEOS-DEV/GEOS/pull/974
• Implement relative permeabilities with tables on device by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1277
• Corbett/references and exceptions by @corbett5 in https://github.com/GEOS-DEV/GEOS/pull/1318
• Add hybrid FVM compositional multiphase solver by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/901
• Updated Build Guide by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1332
• Fix Debug-build compile fail on Lassen by @wrtobin in https://github.com/GEOS-DEV/GEOS/pull/1337
• Update CO2-brine model documentation by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1330
• Enable uncrustify for Pangea by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/1339
• Fixed bug in the computation of the Peaceman index by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1341
• Re-enable Doxygen on Travis and fix existing warnings by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1345
• Update Caliper.rst by @corbett5 in https://github.com/GEOS-DEV/GEOS/pull/1346
• Process external components after core components. by @corbett5 in https://github.com/GEOS-DEV/GEOS/pull/1347
• Fix VTK output to put plot files under output path by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1343
• boomerAMG on GPU for SolidMechanicsLagrangianSSLE by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1054
• Implemented Dead-Oil model working on device by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1313
• Adding asyncronous kernel launching and restructuring the CommunicationTools routines to expose more async to allow for latency hiding by @wrtobin in https://github.com/GEOS-DEV/GEOS/pull/1319
• update TPLs for Pangea build by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/1358
• Kernels for poroelastic solvers by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1353
• Implement CO2Brine model on GPU by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1325
• Small fixes to tutorials. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1365
• Changes for Summit. by @corbett5 in https://github.com/GEOS-DEV/GEOS/pull/1367
• Fixed debug compilation on Lassen by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1368
• Removing dead code + tiny cleanings by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1373
• Reducing visibility of neighborRank in NeighborCommunicator by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1375
• Low order acoustic wave equation by @mndiaye24 in https://github.com/GEOS-DEV/GEOS/pull/1269
• Feature/borio/vem refactoring by @andrea-borio in https://github.com/GEOS-DEV/GEOS/pull/1288
• Fixed compilation warning with clang+hypreGPU on Lassen by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1380
• WIP - circular dependencies / object libraries build by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/1352
• Linear algebra cleanup by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1363
• Update Caliper.rst by @corbett5 in https://github.com/GEOS-DEV/GEOS/pull/1391
• PVTPackage and PAMELA submodule names by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/1396
• Bugfixes for CUDA build (multiphase model kernel wrappers, HypreVector::extract) by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1397
• Device Packing Optimization by @wrtobin in https://github.com/GEOS-DEV/GEOS/pull/1382
• Update host config to resolve Pangea build issue by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/1395
• Fix silo output issue #1186 by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/1400
• Bugfix/hypre lai by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1403
• Parallel synchronization of new embedded surfaces. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1354
• Wrong cast in PTP by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1404
• Feature/wellbore mesh, Traction BC, convert {tensor input} by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/1393
• add missing internal wellbore mesh integrated test baselines by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/1406
• Adding a script to test for xml attribute coverage by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/1102
• Adding timestamp information required by visit to vtk files by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/1407
• Add LaplaceBase class by @andrea-borio in https://github.com/GEOS-DEV/GEOS/pull/1385
• Add pygeosx_tools python package by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/1362
• Triaxial Driver by @joshua-white in https://github.com/GEOS-DEV/GEOS/pull/1364
• Cleanup of NeighborCommunicator by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/1414
• LvArray update. by @corbett5 in https://github.com/GEOS-DEV/GEOS/pull/1410
• Changed how the finite element kernel objects are constructed. by @corbett5 in https://github.com/GEOS-DEV/GEOS/pull/1340
• DofManager cleanup by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1412
• Cleanup TractionBoundaryCondition by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1426
• Corbett/hypre cuda fix by @corbett5 in https://github.com/GEOS-DEV/GEOS/pull/1441
• Adds support for hypre-cuda via spack. by @corbett5 in https://github.com/GEOS-DEV/GEOS/pull/1445
• Fixed bug in compositional residual norm calculation with multiple regions by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1458
• Consistify temperature units for CO2-brine input by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1459
• Fixed the bug related to underscores in PAMELA region/surface names by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1460
• Mgr cleanup + Poromechanics solvers cleanup by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1401
• Fix Wedge node ordering by @AntoineMazuyer in https://github.com/GEOS-DEV/GEOS/pull/1454
• Improved well error/warning messages by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1472
• Output 4D fields in VTK by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1464
• Fix bugs and add unit tests for ComponentMask by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1473
• Implemented MGR recipes for flow solvers (hybrid FVM, wells) by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1471
• Implemented CFL numbers in compositional solver by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1466
• Change multiphase array layouts for CUDA builds by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1463
• Refactor VEM classes to allow computations on GPU by @andrea-borio in https://github.com/GEOS-DEV/GEOS/pull/1419
• VTK output improvements by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1484
• Update index.rst by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/1444
• Proposal for type dispatch by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1487
• Move volumeBalance to MultipahseporomechanicsKernel. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1488
• Dynamic Time History Collection by @wrtobin in https://github.com/GEOS-DEV/GEOS/pull/1360
• CMake build cleanup by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/1433
• Specificy multiple input xml files from command line by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/1465
• Remove static_if by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1493
• Cleanup/settgast/move ptp by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/1498
• Replace element type strings with enum by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1499
• Force google's gsutil to use python3 by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1509
• Creation of a CoupleSolidModel to handle Poro-Solid-Damage models. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1455
• Updating tutorial step08 by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1511
• Consider confining stress on SIF calculation and fracture propagation by @WuHuiLLNL in https://github.com/GEOS-DEV/GEOS/pull/1486
• Moved resizeFields to registerDataOnMesh in compositional solvers by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1512
• Docs for Analytical Verification of Drucker-Prager Model by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1474
• Add missing & Remove duplicated files in CMakeLists.txt by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/1490
• Add type check for coupledSolid by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1518
• Fix schema generation crash + minor bugfixes by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1519
• XML Redundancy Tool by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/1497
• Add new cluster target and clean CI by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1467
• Remove unused TPLs by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1527
• Changed default m_component value to -1 in FieldSpecificationBase to … by @jafranc in https://github.com/GEOS-DEV/GEOS/pull/1500
• Correct some XMLs by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/1526
• Remove warning by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1530
• Update solid model documentation by @joshua-white in https://github.com/GEOS-DEV/GEOS/pull/1329
• Refactor PAMELA field import by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1532
• Docs for Solving Wellbore Problems with Poroplastic Solver by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1475
• Fixed bug in total density for surface condition injection rate by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1536
• Minor doc fixes by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1535
• Prevent VTK counter FPE by @herve-gross in https://github.com/GEOS-DEV/GEOS/pull/1540
• [Docs] coupled solid documentation by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1539
• Fix VTK crash with empty subregions by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1543
• Use of CompressibleSolid - Stencils refactoring - Transmissibility update by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1311
• Updated LvArray. by @corbett5 in https://github.com/GEOS-DEV/GEOS/pull/1551
• Implement Black-Oil model on GPU by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1537
• Multiphase fluid model cleanup by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1554
• Fix for reference porosity import by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1557
• Elastic Orthotropic constitutive model by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/1323
• Bugfix for #1550 by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1556
• Implemented time-dependent well rate and bhp tables by @tang39 in https://github.com/GEOS-DEV/GEOS/pull/1468
• Doc for cased wellbore problem by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/1542
• Fix #1524 by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1558
• Change to TotalEnergies by @herve-gross in https://github.com/GEOS-DEV/GEOS/pull/1562
• Tutorial updates by @joshua-white in https://github.com/GEOS-DEV/GEOS/pull/1538
• Added calls to reserve in transmissibilities precomputation by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1572
• Move xml files of wellbore problems to benchmark folders by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1574
• Documentation for docker development. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1567
• Doc for deviated elastic wellbore by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/1571
• Correct wrong markdown formatting by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1577
• Docs/castelletto1/update publications by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1578
• Add version output by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1581
• Proppant solver refactoring by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1559
• Improve version header generation by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1583
• Projection EDFM by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1565
• Add Ninja job pool limit options by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1590
• Fixed negative cell volume with reverseZ on CPG by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1589
• Poromechanics kernels refactoring by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1596
• Use {fmt} for message formatting by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1568
• update TPL in Pangea host config by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/1602
• Adding Cam-Clay/Delft-Egg Plasticity Models by @shabnamjs in https://github.com/GEOS-DEV/GEOS/pull/1336
• Xcode build fix by @joshua-white in https://github.com/GEOS-DEV/GEOS/pull/1582
• Add TPL note to QuickStart by @joshua-white in https://github.com/GEOS-DEV/GEOS/pull/1605
• [Doc] Verification example with MCC plasticity model by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1575
• [Doc] advanced example for simulating proppant slot test by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1573
• [Doc] Fixed some inconsistencies and misprints in the updated tutorial by @mkhait in https://github.com/GEOS-DEV/GEOS/pull/1591
• Keep neighbors with one-way ghost exchange by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1599
• Updating the input xml parsing, adding two xml unit tests by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/1580
• Correct some XMLs by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/1608
• Disabled cross-flow when well is shut down by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1601
• Doc for deviated PoroElastic wellbore by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/1585
• Fix broken links in tutorial examples by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1614
• Add pygeosx tutorials and update advanced xml features by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/1609
• Implemented contact relation update classes by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1576
• Bugfixes for time history functionality. by @wrtobin in https://github.com/GEOS-DEV/GEOS/pull/1612
• update copyright and author on rtd configuration file by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/1618
• Allow nested XML includes by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1617
• Porosity initialization by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1595
• Automatic allocation of compound constitutive relations by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1584
• Adding a Pecan CPU target alongside the GPU one. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1625
• Remove memory leak when creating already created HypreVector. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1628
• restructure relationship between tests, examples, benchmarks by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/1569
• Correct handling of relative paths with multiple input files by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1634
• Improved/added table relative permeability/capillary pressure by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1633
• Update "Included Files" section of User Guide by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1621
• Add MPI barrier after creating composite input XML by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1639
• [Doc] advanced example of Kirsch wellbore problem by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1635
• [Doc] Verification example of a single fracture under shear compression by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1615
• [Doc] KGD example with toughness dominated by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/1610
• Implemented aquifer boundary condition by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1561
• Repairing a few XML files in the repo by @herve-gross in https://github.com/GEOS-DEV/GEOS/pull/1641
• Adding features for Wellbore meshing by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/1424
• Added aquifer documentation by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1648
• XML reorganization # 2 by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/1643
• Linear combination of mass balance equations for compositional multiphase flow solvers by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1646
• Update Brew version for MPI by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1658
• Refactored SourceFlux application in compositional solvers by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1654
• Add PR and build numbers to deployment locations by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1665
• Repair/remove dead symlinks. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1664
• [Docs] Example of KGD fracture with viscosity dominated regime by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/1642
• Update TPL for Pangea build by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/1649
• Structure of the wave propagator by @mndiaye24 in https://github.com/GEOS-DEV/GEOS/pull/1470
• Unify interfaces of FEM and VEM classes by @andrea-borio in https://github.com/GEOS-DEV/GEOS/pull/1489
• [docs] on win install v0 by @jafranc in https://github.com/GEOS-DEV/GEOS/pull/1622
• [Doc] advanced example of intersected fractures by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1651
• Remove duplicated SolverBase::getDiscretization by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1667
• Fix ReadTheDocs builds by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/1666
• Fixed division by zero in getHistoryMetadata by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1674
• Feature/castelletto1/lai unit testing by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1669
• Implemented hydrostatic equilibrium initial condition by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1607
• [Doc] extend sneddon problem to different solvers by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1659
• Add solid internal energy. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1660
• Linear algebra changes by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1668
• Added hydrostatic equilibrium documentation by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1640
• Adding CO2 brine constitutives: brine density and viscosity based on Ezrokhi`s method by @mkhait in https://github.com/GEOS-DEV/GEOS/pull/1647
• Implemented new interface for accumulation and volume balance kernels by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1672
• Contact relationships interface refactoring by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1662
• Check that PR is assigned by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1691
• LAI vector refactor - zero copy assembly by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1686
• Fix #1694 by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1695
• Fix advanced problems with LagrangeContact by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1692
• Added logging for boundary conditions in flow solvers by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1676
• Add host-configs for Sherlock by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1697
• Change github REST call addresses by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1703
• Reduce logs for packaging targets by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1705
• Correct Dockerfile indentation. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1707
• Refactor enthalpy and internal energy for CO2 brine by @mkhait in https://github.com/GEOS-DEV/GEOS/pull/1689
• Extrinsic mesh data for flow solvers by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1702
• Move to ubuntu 20.04 and gcc 9 & 10 by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1700
• Implemented extrinsic data for multiphase constitutive models by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1709
• PVTDriver by @joshua-white in https://github.com/GEOS-DEV/GEOS/pull/1711
• Fixed Pamela parallel properties import (inside GEOSX) by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1713
• Fixing petrowiki links by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1716
• Implemented new kernel interface for compositional properties by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1698
• Implemented new kernel interface for flux by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1696
• [Doc] Mandel's poroelastic problem by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1684
• Remove accessor member variables from flow/well solvers by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1718
• Reduce visibility of nested structures after refactoring. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1720
• [Feature] implement fault permeability models by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1564
• Added validation example for Problem 1.1 of Class (2009) by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1721
• Implemented multivariable multidimensional interpolators for future OBL solver by @mkhait in https://github.com/GEOS-DEV/GEOS/pull/1714
• Improved the Newton solver for solubility and density in CO2-brine fluid by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1729
• Implemented J-function capillary pressure by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1734
• Implemented thermal conductivity models by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1732
• Fix data access for permuted 2D arrays in functions by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1740
• Docs/castelletto1/update publications by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1744
• Integrated tests on LassenSerial direct solver in all integrated tests by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1737
• Improvements towards arbitrary polyhedral grids by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1418
• Correct traits and add template getter protection. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1747
• Updating geosxxmltools installation method by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/1624
• Fixed pure water viscosity computation in CO2BrinePhillipsFluid by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1739
• Simplification of the return_script in travis. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1749
• Updated tutorial 3 with correct depths by @herve-gross in https://github.com/GEOS-DEV/GEOS/pull/1745
• Added warning and error messages in fluid and wells by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1678
• Upgrade to vtk 9.0.3 by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1752
• buildrootdir/installrootdir options in config-build.py by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/1741
• Bugfix/castelletto1/issue 1708 by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1754
• Enabling multiple mesh bodies by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/1682
• Unified mass/molar conversions in fluid models by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1760
• VTK Mesh Generator by @AntoineMazuyer in https://github.com/GEOS-DEV/GEOS/pull/1453
• Added flag to disable crossflow in wells by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1757
• Fixing Tutorial 3 by @herve-gross in https://github.com/GEOS-DEV/GEOS/pull/1770
• Removes two double-quotes (XML invalid otherwise) by @herve-gross in https://github.com/GEOS-DEV/GEOS/pull/1769
• Correct namespaces which were not respecting camelCase convention by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1773
• Remove useless include by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1772
• Implemented Killough relative permeability hysteresis by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1706
• Delay initialization of HistoryOuput by @labesse40 in https://github.com/GEOS-DEV/GEOS/pull/1765
• Fix face pressure BC with variable permeability by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1785
• config file for pangea3 by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/1748
• Set an error if non-supported object is requested for Pack. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1782
• VEM support in FEM kernel interface by @andrea-borio in https://github.com/GEOS-DEV/GEOS/pull/1690
• [Doc] add validation example based on the experimental study of a KGD fracture by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1780
• Combined multifluid derivatives to reduce fluid kernel wrapper size by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1779
• Protect against implicit C++ relations by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1778
• PressureAtReceiversNp1 modification and SourceValue array for rhs calculation by @labesse40 in https://github.com/GEOS-DEV/GEOS/pull/1764
• Activated thermal option in CO2-brine fluid model by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1755
• Fix a couple minor issues with XML preprocessor by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1787
• Fix the reported issue (#1623) on running hydraulic fracturing example in tutorial by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1728
• Restored compatibility checks in compositional solvers by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1793
• Feature/besset pygeosx by @labesse40 in https://github.com/GEOS-DEV/GEOS/pull/1704
• Add tpls include in dummy cmake for doc. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1777
• EFEM Linear solver strategies by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1549
• fix clang10 issue by modifying dependency in unitTests CmakeLists by @labesse40 in https://github.com/GEOS-DEV/GEOS/pull/1807
• Revert "fix clang10 issue by modifying dependency in unitTests CmakeLists" by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/1812
• Improve VisIt Compatibility by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/1758
• Documentation: constitutive models in the developer guide by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1570
• Fixed the computation of the initial total mass density by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1797
• Update hypre, localIndex to int, add smoke and benchmark cases for ECP problem. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1767
• Correct argument order inconsistency. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1820
• Group::m_wrappers[name] can be different from Group::m_wrappers[name]->getName() by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1803
• Refactored compositional flow unit tests by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1809
• Poromechanics kernels refactoring by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1600
• Cleaned up isPointInsidePolyhedron by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1822
• [Doc] Verification example of a radial frac in toughness dominated regime by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1798
• Correct implementation for right-preconditioned BiCGStab by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1828
• *packByIndex* functions of Wrapper depends on sizedFromParent() == 1. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1792
• VTK import improvements by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1791
• Introduce ContactSolverBase by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1677
• Improve packing naming conventions by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1831
• Fixed the double free corruption problem in the unit tests after integration of pygeosx by @sframba in https://github.com/GEOS-DEV/GEOS/pull/1813
• Fixed an input validation bug in well controls by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1837
• Moving sphinx documentation scripts to their own files by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/1796
• Moved fluid variables at time n to multifluid constitutive model by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1827
• Update Publications.rst by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1849
• Correct Group::pack by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1850
• Improve config-build.py and put cache option at the end of the command line. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1832
• Improved phase internal energy computation by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1846
• Default pack/unpack for non packable/unpackable data. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1788
• Change default behavior of pack member functions w.r.t. wrapper names by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1858
• Better warning message when wrapper is not here. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1864
• Add another verification example of a radial frac developed in viscosity dominated regime by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1821
• Increased readibility for hypre interface by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1857
• Fix performance regression of mesh map generation by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1847
• Verification example of a PKN frac developed in viscosity dominated regime by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1838
• Fixing ordering for pyramids by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1866
• Fix missing multibody loops in SolidMechanicsLagrangianFEM solver. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1862
• Add energy balance equation to Compositional solver. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1225
• Enable Coulomb Friction for EFEM Solvers by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1840
• Update blt to v0.5.1 by @victorapm in https://github.com/GEOS-DEV/GEOS/pull/1879
• Update hdf5 silo conduit by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/1874
• Improve VTK mesh distribution via ParMETIS by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1869
• Implemented (field_n,field) flow formulation by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1880
• Renaming prism to wedge by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1885
• Implemented well improvements by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1886
• PVTPackage update by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1893
• Computing cell volumes using numerical integration by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1887
• Fix VTK element output by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1895
• Bugfix/castelletto1/pamela wedge import by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1896
• Adding check for duplicate named xml entries by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/1868
• Add OBL-based solver, analog of Super Engine in DARTS by @mkhait in https://github.com/GEOS-DEV/GEOS/pull/1733
• add reinit method to waveSolverBase by @labesse40 in https://github.com/GEOS-DEV/GEOS/pull/1808
• Fix misplaced initialization for boundary tags by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/1899
• Add a tutorial example for the triaxialDriver by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1894
• Add region list to field synchronization by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1878
• Using mermaid for class diagrams by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1897
• Fix function interface for PorousDelftEgg and PorousModifiedCamClay by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1907
• New CPR-like MGR recipes for compositional flow by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1712
• Update Publications.rst by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1916
• added check on ghostRank when checking if sources and receivers are local by @sframba in https://github.com/GEOS-DEV/GEOS/pull/1914
• Little time history reorganization by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1873
• Implemented single-phase accumulation kernel class by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1881
• Update TPLs after hypre patch by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1917
• Fixed parallel field import in VTKMeshGenerator by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1918
• Added MGR recipe for thermal compositional solver by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1836
• Adding pentagonal and hexagonal prism cells by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1902
• Fixed single-phase well MGR recipes by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1921
• Correct wrong make -j command line by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1923
• Test plantuml for the doc by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1892
• Feature/castelletto1/suppress move logging by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1924
• Attempting to make the xml processing mpi aware by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/1781
• Seismic traces: bugfix and unit test by @sframba in https://github.com/GEOS-DEV/GEOS/pull/1900
• Fixed misleading behavior in source flux boundary condition by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1931
• update pangea3 host-config file and remove hard-coded Python version by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/1938
• Remove mermaid support and use plantuml instead. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1946
• Use Gitlab CI for nightly testing by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/1888
• Fix some warning when compiled with some version of gcc by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/1929
• missing mass intialization by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/1954
• Adding an extra string parsing check for attributes by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/1928
• Implemented a task for pre/post equilibration in coupled problems by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1898
• fix OpenBLAS in Pangea3 host-config, add pygeosx to install process by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/1951
• Fix VTK memory leak by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1950
• Refactored well solvers before coupling with poromechanics by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1890
• Formatting schema string type names to avoid compiler-related diffs by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/1961
• Implement a thermal single phase flow solver by @frankfeifan in https://github.com/GEOS-DEV/GEOS/pull/1920
• Simplify smoke test for ProppantSlotTest by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1959
• Implemented VTK/Silo field selection from input file by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1912
• Format python files with YAPF by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/1947
• Azure Pipelines by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/1969
• Move gcc 10 debug job back to Travis by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/1988
• [Doc] Verification of induced stresses along a fault in a pressurized reservoir by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1962
• Point to last build of TPL PR #187 by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/1966
• LVArray PR that adds GPU sync when converting to numpy array by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/1955
• Implemented solver statistics by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1979
• Reorganize verification examples by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1974
• Adding method to import nodesets in vtk meshes, convert abaqus meshes to vtu by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/1942
• Implemented coupled solvers in the new style by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1978
• Update/hypre chai raja by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/1949
• Implemented face-based Dirichlet boundary condition in compositional solver by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1986
• Restore Pangea2 deployment by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/1999
• Bugfix/castelletto1/tutorial3 by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1990
• Add PT-Scotch as a partitioning method option in VTKMesh by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1996
• Use brew's tap to install precise version of open-mpi by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2008
• Bugfix/mbader/wave propagation source injection mpi by @nmbader in https://github.com/GEOS-DEV/GEOS/pull/1995
• Implemented output of reservoir statistics by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1735
• Add VTK Outputs wrappers for PyGEOSX by @paloma-martinez in https://github.com/GEOS-DEV/GEOS/pull/1956
• Feature/ascuotto/vtk import by @aure-lily in https://github.com/GEOS-DEV/GEOS/pull/1987
• Fix TPL discrepancy between travis and azure by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2013
• Replacing PAMELA mesh with VTK mesh by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/1992
• Compute cell stencils between cell regions only. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2012
• Move fracture fields from EdgeManager to FaceElementSubRegion. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2011
• Re-enable unit tests in OSX CI and fix catalog registration by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/2019
• Improved parsing speed for table files by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1983
• create a MeshObjectPath class to manage specification of paths to mesh objects by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/1963
• Cleanup of face/cell boundary condition in flow solvers by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2001
• Using large VMs travis by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2025
• Re-enable object libraries build by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/2018
• Feature/mbader/second order acoustic pml by @nmbader in https://github.com/GEOS-DEV/GEOS/pull/1997
• Use VTK Global IDs if available by @sframba in https://github.com/GEOS-DEV/GEOS/pull/2017
• Add FaceBlock abstraction by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2034
• Remove hardcoded name "faceElementSubRegion" and "embeddedSurfaceSubRegion". by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2036
• Update TPL by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2038
• perform difference modulo 2PI on atan2 testings by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/2030
• Multi-level discretization + High order Gauss-Lobatto for SEM by @labesse40 in https://github.com/GEOS-DEV/GEOS/pull/1324
• Verification of two-phase flow in porous media with Buckley-Leverett problem by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/2026
• Enabled wells with poromechanics by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2005
• Added Newton global damping by default in compositional solvers by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2039
• add multiBody/multiLevel support to VTK output system by @andrembcosta in https://github.com/GEOS-DEV/GEOS/pull/2027
• Implemented small changes in OBL by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2044
• Rollback Azure Pipelines Jobs To Travis by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/2037
• split fracture stencil and trigger fracture stencil for imported faults by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2048
• Added support for net-to-gross by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2033
• Remove script and duplicated variables. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2049
• Skipped the shallow mesh copies in the vtk output by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2050
• travis stage for draft PR by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2053
• Fix quick start doc for submodules' fallback. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2055
• Improve performance of ghost map unpacking by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/1989
• Force GEOSX organisation in submodules by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2058
• Removed MPICXXBOOL by @corbett5 in https://github.com/GEOS-DEV/GEOS/pull/2060
• Fixed a crash in the statistics on GPU by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2061
• Adding trapped mass as output from compositional statistics by @jafranc in https://github.com/GEOS-DEV/GEOS/pull/2052
• Implemented time stepping based on state change by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2062
• Add prism 7+ support by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2051
• Add openmp and/or hdf5 to the dependencyList when needed with slurm MPI by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/2067
• Add python tools documentation to sphinx by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/1991
• Add support for NVTX in cuda traces using existing instrumentation by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/1980
• Remove discretization attribute from SurfaceGenerator. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2077
• Increased well verbosity; made well shut down more robust by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2078
• add support for apple M1 chip by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2074
• Renable parallelDevicePolicy in SEM by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/2081
• Low order elastic wave equation by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/1865
• Use real32 floats in WaveSolver by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/2032
• fix compilation with nvtx support enabled by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/2096
• Implemented source flux boundary condition in OBL by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2088
• Reorganize fractures input files by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2094
• Add ubuntu 22.04 LTS Jammy to travis by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2090
• Implement a phase-field nucleation model by @frankfeifan in https://github.com/GEOS-DEV/GEOS/pull/1872
• Enabled PEBI cells in single-phase hybrid FVM by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2095
• Updating sphinx publications by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/2105
• Added component fraction local chopping in OBL by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2099
• Fix outdated rst files by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/2112
• Small fix to python script to generate sample mesh files. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2113
• Added DOI to readme. by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2108
• First version of meshDoctor by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2091
• Remove registration of velocity and acceleration in QS simulations. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2085
• Added extrinsic mesh data for solid mechanics by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2098
• Reduce linux capabilities for docker in CI by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2120
• LC TPLs rebuild after Ubuntu 22 Added to Travis CI by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/2104
• Feature/wave propagations/add backward propagation by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/1915
• fix lassen debug build by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2121
• Added MGR recipes for poromechanics with wells + ILU global smoother by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2119
• Fix nvcc crash related to fast_float by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/2080
• extract vtk logic into utility files by @untereiner in https://github.com/GEOS-DEV/GEOS/pull/2116
• Output and postprocess HDF5 files for HF examples by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/2106
• Implemented DAS modeling in elastic wave propagation solver by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2118
• Generate separate compilation units for solid mechanics kernels by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2086
• Modify compositional FaceBasedAssemblyKernel to work with interesecting fractures. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2114
• Adding pressure jump stabilization to coupled poromechanics by @ryar9534 in https://github.com/GEOS-DEV/GEOS/pull/1901
• Output hypre version by @victorapm in https://github.com/GEOS-DEV/GEOS/pull/2124
• Added validation example for Problem 1.2 of Class (2009) by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1723
• Adding Sherlock CPU target for travis by @jafranc in https://github.com/GEOS-DEV/GEOS/pull/2010
• Update Multi-resolution publication data. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2140
• Adding version info to the terminal output by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2138
• [feature] add Willis-Richards Fault Permeability Model by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1730
• Changed treatment of gravity in poromechanics kernels by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2043
• fix scotch compilation by @untereiner in https://github.com/GEOS-DEV/GEOS/pull/2134
• Adding prism 7 and 8 to existing integrated tests by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/2141
• Support for more vtk mesh formats by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/2139
• Rename extrinsicData into field by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2147
• Restored logging in VTKMeshGenerator by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2151
• Fix failing integrated tests on gitlab by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/2152
• Allow choice of finite element types in Finite Element Dispatch by @sframba in https://github.com/GEOS-DEV/GEOS/pull/2149
• add flags to enable fesapi by @untereiner in https://github.com/GEOS-DEV/GEOS/pull/2117
• Shared Library by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/2076
• Feature/karimifard/supported elements unit test by @karimifard in https://github.com/GEOS-DEV/GEOS/pull/2150
• Add python unit tests by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/2142
• Build should not stop if FESAPI is not defined. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2157
• Add cuda11 to lassen. update hypre. by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2164
• Update Adiak by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/2137
• Optimization of initialization phase by @sframba in https://github.com/GEOS-DEV/GEOS/pull/2084
• avoid warning on non reachable statement after return by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/2160
• Feature/enable hypre gpu on pangea3 by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/2156
• Added face boundary condition to single-phase hybrid FVM by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2161
• Added validation example for Problem 3.x of Class (2009) - Part 1 by @jafranc in https://github.com/GEOS-DEV/GEOS/pull/1853
• Import face block from vtk by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2126
• Added faceBlocks to the baselines by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2171
• Fixed compilation issue on Lassen by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2181
• Acoustic wave solver optimization by @sframba in https://github.com/GEOS-DEV/GEOS/pull/2123
• Added volume, self intersecting and wrong support nodes checks to mesh_doctor. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2158
• Update Pangea3 config for TPL by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2167
• Fix vtk labels for stress. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2166
• VEM support in small strain solid mechanics solvers by @andrea-borio in https://github.com/GEOS-DEV/GEOS/pull/1835
• Update docs for fault models by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/2186
• Update the style of single phase face BC by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/2183
• Remove feature documentation for PAMELA. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2203
• Added a poromechanics option to solve only mechanics in the burdens by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2169
• Build travis-ci using ninja by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2155
• Remove PAMELA support from GEOSX by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2204
• Fix non conformal mesh drawing in doc by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2206
• Adding the integrated test for T-shaped fractures. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2198
• Generated separate poromechanics compilation units by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2208
• Separate denseLinearAlgebra in its own component. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2211
• Small improvements for WellControls by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2192
• Elastic wave solver optimization by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/2184
• Fixed the Mandel script in the documentation by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2219
• Create a relpermDriver to test 3-phase interpolators and tables validity by @jafranc in https://github.com/GEOS-DEV/GEOS/pull/2143
• Add polytopal mesh support to single-phase and multi-phase poromechanics by @andrea-borio in https://github.com/GEOS-DEV/GEOS/pull/2199
• Fully coupled THM 1: Refactored poromechanics kernels by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2194
• Refactor/wave solver improvment by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/2175
• fix abs namespace by @untereiner in https://github.com/GEOS-DEV/GEOS/pull/2218
• Feature: SinglePhasePoromechanics with conforming fractures using lagrange multiplier based contact. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2170
• Added error message for disabled thermal fluid model by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2220
• Sequential coupling in CoupledSolver by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2202
• Add thermal face boundary condition by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/2213
• Changed abs to LvArray::math::abs by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2229
• Fix for async wait bug #2173 by @kjdugan in https://github.com/GEOS-DEV/GEOS/pull/2230
• Remove hardcoded number of degrees of freedom by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/2234
• Tag removal in the title of the github issues. by @herve-gross in https://github.com/GEOS-DEV/GEOS/pull/1856
• Added dedicated MGR recipe for OBL by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2237
• EDFM improvements - add CI computation kernel that uses numerical integration. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1925
• Fix bug when we get the number of degrees of freedom which implies resize with 0 as dimension by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/2239
• Remove OSX job from Travis by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2241
• Add Reactions for Geochemistry and a ReactiveMultiFluidModel by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/1817
• fix error in NeighborCommunicator by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2248
• Added Gaussian elimination F-relaxation for wells in MGR by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2238
• DofManager small refactoring to avoid registering solid model on fracture subRegions: by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2247
• Feature/add lifo storage by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/2092
• move non mesh parts of importFields to meshManager by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/2212
• Fixed bug in MGR recipe by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2251
• VTK writes ghost cells conditionally by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2193
• Fix bug in reinit() for acoustic wave solver (pygeosx) by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/2252
• Added reporting of immobile phase mass for compositional simulations by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2259
• Implemented initialization elastic time step for coupled problems by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1927
• Use cell block name instead of region name in VTK field import. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2267
• Skipped system setup to reduce data movement to GPU by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2254
• Add doc and python script for pure thermal diffusion example by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/2249
• Modified integrated tests to test property import by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2268
• Validate well to reservoir connections by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2269
• Add solver for first order acoustic wave equation by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/2191
• Improve doc for docker development. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2276
• Fully coupled THM 2: Implemented a fully coupled single-phase THM solver by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2195
• Changed FaceManager::MAXFACENODES from 9 to 11. by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/2261
• Added a thermo-poromechanical consolidation example to the documentation by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2275
• Fix build issue #2287 by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/2288
• Fix compilation warning/error with clang by @untereiner in https://github.com/GEOS-DEV/GEOS/pull/2281
• Added a validation function for boundary conditions by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2291
• Add doc for a cased ThermoElastic wellbore example by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/2299
• Improve documentation for FaceBlockABC. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2305
• Fix doxygen path on ReadTheDocs by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/2260
• Add checks to ensure that MPI_wait calls have completed prior to destruction of container. by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2294
• PVT file reading error by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/2307
• output memory allocations to screen by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2314
• Unified residual norm calculations in flow/well solvers by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/1998
• Bugfix/corbett/face collision by @corbett5 in https://github.com/GEOS-DEV/GEOS/pull/2321
• Fixed waitOrderedOrWaitAll signature by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2332
• Update kernelInterface.rst by @IsaacJu-debug in https://github.com/GEOS-DEV/GEOS/pull/2333
• add standard install locations by @untereiner in https://github.com/GEOS-DEV/GEOS/pull/2278
• Sequentially coupled single phase THM solver by @frankfeifan in https://github.com/GEOS-DEV/GEOS/pull/2064
• Remove keep alive message on travis by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2319
• Fixed isCoordInObject for cylinder by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2334
• SinglePhasePoromechanicsConformingFractures: fix issues with closed fractures and stabilization assembly. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2285
• Update issue templates to include EPIC issues by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2337
• Fully coupled THM 3: Implemented a fully coupled multiphase compositional THM solver by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2196
• Example of full THM coupling for an open wellbore by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/2317
• Modification of the docs about how to fill ElementRegions by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/2316
• Add Exponential Decay Permeability Model for Fault by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/1861
• Changed volume constraint scaling for poromechanics by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2352
• fix two tutorial examples by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/2353
• Fix flow gravity term in fractures by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2342
• Improve wording for travis jobs by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2354
• Rebaseline of integratedTests after merging PR 2342 by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2368
• Improved WellControls input control by @untereiner in https://github.com/GEOS-DEV/GEOS/pull/2351
• Fully coupled THM 4: Added MGR recipes for single-phase and multiphase THM by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2197
• Provide meaningful string names to Cylinder inputs by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/2364
• Fixed bug in the parallel computation of transmissibilities by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2367
• Configure github's codespaces by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2107
• Import DFN from vtk meshes. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2345
• Compute normal with newell's method by @untereiner in https://github.com/GEOS-DEV/GEOS/pull/2280
• Disabled time frequency for solver events by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2380
• Fixed uninitialized variables in flux kernels by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2387
• Sequential single-phase/multiphase flow-mechanics follow-up by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2366
• Documentation for GitHub codespaces by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2382
• Update .gitmodules by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2391
• Change geosx to geos in macros, include guards, namespace... by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2392
• Add solver for first order elastic wave equation by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/2246
• Negative time simulation for AcousticSEM by @labesse40 in https://github.com/GEOS-DEV/GEOS/pull/2292
• ObjectPath XML errors feedback by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/2341
• New Quartz host configs for clang14.0.6 and gcc12.1.1 by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2406
• Gitlab - Load python 2 module && ATS - toss4 change by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/2411
• Proppant smoke tests with gcc by @castelletto1 in https://github.com/GEOS-DEV/GEOS/pull/2414
• Example of an elastic Wellbore with imperfect casing-cement-rock interfaces by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/2374
• Bugfix/jmeng/validatebchighorder2 by @jiemeng-total in https://github.com/GEOS-DEV/GEOS/pull/2396
• Fix the issue #2322 by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/2398
• Cleaned up sparsity pattern of pore volume constraint by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2395
• Expose BoomerAMG options by @victorapm in https://github.com/GEOS-DEV/GEOS/pull/2136
• update LC compilers and TPL paths by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2415
• Updating ATS by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/2265
• Change default linear solver parameters by @victorapm in https://github.com/GEOS-DEV/GEOS/pull/2190
• Update ThermoPoroElastic Wellbore Problem by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/2412
• Improvements in mesh_doctor by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2274
• Make CLion's code width consistent with uncrustify by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2421
• update embedded xml using raw string literals by @tbeltzun in https://github.com/GEOS-DEV/GEOS/pull/2416
• Remove utility functions from SolidBaseUpdates by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2419
• Fixed wellbore bug related to useCartesianOuterBoundary by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2422
• Update and merge viscoplasticity models by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/2377
• Output run start/end/ranks by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/2426
• Add anisotropy factors to Carman-Kozeny by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/2425
• update integratedTests submodule hash by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2435
• Feature/wrtobin/crusher rocm by @wrtobin in https://github.com/GEOS-DEV/GEOS/pull/2453
• Doc for the viscoplastic theory by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/2405
• Fix regression in config-build by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/2439
• Gitlab ATS changes by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/2434
• Bugfix for {fmt} cmake by @wrtobin in https://github.com/GEOS-DEV/GEOS/pull/2460
• fix compatibility with cmake 3.17 by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/2437
• Modify multi-level to allow mpi communication for high order Spectral Element by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/2313
• Quick fixes for EDFM discretization by @karimifard in https://github.com/GEOS-DEV/GEOS/pull/2420
• Refactored constitutive/fluid folder by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2441
• Fixed a few xmls by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2458
• Refactor in flux kernel in prep. for upwinding work by @jafranc in https://github.com/GEOS-DEV/GEOS/pull/2459
• Years, days, hrs, min, sec time format. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2455
• Fix assert variable scope. by @untereiner in https://github.com/GEOS-DEV/GEOS/pull/2433
• Chombo Coupling Fixes by @wrtobin in https://github.com/GEOS-DEV/GEOS/pull/2327
• Reduce compilation time by removing some kernel instantiations. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2480
• Upwind enthalpy flux for sourceFlux b.c. for producers (positive fluxes) by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2457
• Simplify .gitignore and add installation dir in codespaces. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2467
• Implemented a check on minimum pore volume by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2385
• Add the fracture accummulation term in SinglePhasePoromechanicsConformingFractures by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2478
• Ensure unit tests are enabled by default. by @wrtobin in https://github.com/GEOS-DEV/GEOS/pull/2464
• Preparatory work for local chop implementation by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2468
• Change permutation type in mesh_doctor CLI by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2483
• add missing geosxcorelibs removed in #2453 by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/2472
• XML string array errors feedback by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/2357
• Implemented Rachford-Rice and cubic EOS by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2451
• Tiogia TPL Update / Build Fixes by @wrtobin in https://github.com/GEOS-DEV/GEOS/pull/2485
• Fix description for forceDt attribute in Geos doc tutorial 3 by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/2497
• Update XMLs & Add script for analytical results of the EDP wellbore example by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/2442
• singlePhase thermal flow and thermoporomechanics with fractures by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2384
• Fix unit test tests for Q3 and Q5 Gauss-Lobatto by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/2500
• Enable poroelasticity in hydraulic fracture solver by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2469
• apply vtk patch for FPE in output routines by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2503
• Fix device build by @victorapm in https://github.com/GEOS-DEV/GEOS/pull/2506
• Install both geosx and geos executables. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2466
• Github Actions by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/2400
• fix const-ness compilation error by @untereiner in https://github.com/GEOS-DEV/GEOS/pull/2471
• Allow for embedded fractures of arbitrary planar shapes by @andrembcosta in https://github.com/GEOS-DEV/GEOS/pull/2479
• Drucker-Prager wellbore with cohesion hardening by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/2491
• Bugfix/jmeng/multiregion for highorder by @jiemeng-total in https://github.com/GEOS-DEV/GEOS/pull/2522
• Add a pygeosx wrapper to get the initialization state by @paloma-martinez in https://github.com/GEOS-DEV/GEOS/pull/2511
• Implement k-value initialisation by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2492
• Added a warning for porosity above 1 by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2508
• Implement Cubic EOS derivatives by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2520
• Improve robustness of MGR strategies for THM problems by @victorapm in https://github.com/GEOS-DEV/GEOS/pull/2531
• Stop validation of PeriodicEvent without a target by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2487
• Implemented RCM to reorder degrees of freedom by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2499
• C1-PPU implementation by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2410
• Fix compilation issue by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2539
• Fixed the use of globalIds in parallel by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2540
• Fix source injection when using multi region with first order wave propagation solver by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/2488
• Split generateMesh into business and geometry parts by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/2272
• Github Actions - Check for all job completion by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/2555
• c++17 support by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2496
• update blt submodule to v0.5.3 by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2518
• Sequential flow-mechanics follow-up, iteration 2 by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2554
• fix a few typos and 404s by @tbeltzun in https://github.com/GEOS-DEV/GEOS/pull/2562
• Added checks for displacement BCs and delayed well transmissibility calculations by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2564
• Remove erroneous template from non-template member function calls. by @wrtobin in https://github.com/GEOS-DEV/GEOS/pull/2583
• Implement negative two-phase flash by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2484
• Update .gitlab-ci.yml host-config paths, CMake version to 3.23.1 by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/2563
• Change GEOSX to GEOS in README by @sytuannguyen in https://github.com/GEOS-DEV/GEOS/pull/2575
• fix two tutorial examples by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/2576
• Feature/change lifo default parameters and fix bugs by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/2312
• Added a function to VTKUtilities to avoid empty ranks after redistributeByKdTree by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2569
• Remove travis by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2571
• Use 32bits coordinates inside wave propagators by @XL64 in https://github.com/GEOS-DEV/GEOS/pull/2513
• Adding curve checks to integratedTests by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/2481
• Update tutorial example for CO2 injection by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/2596
• Add reordering steps in Box definition by @jafranc in https://github.com/GEOS-DEV/GEOS/pull/2588
• Adding hydraulic fracture examples with poroelasticity by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/2521
• Tioga Build Fix, CI Modules, Warning Suppression by @wrtobin in https://github.com/GEOS-DEV/GEOS/pull/2530
• Fix bug in reinit for elastic wave solver (pygeosx) by @paloma-martinez in https://github.com/GEOS-DEV/GEOS/pull/2587
• Update tpl tag by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2619
• Github Actions - Separate CUDA builds by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/2598
• [Testing] Test Github Actions tagged Docker Images by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/2573
• Improvements to efem kernels by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2528
• Fix a bug in MappedVector::erase by @klevzoff in https://github.com/GEOS-DEV/GEOS/pull/2608
• Update doc for GEOSTPLTAG in GHA by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2621
• Add pandas to readthedocs requirements.txt by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2614
• rebaseline from PR 2608 by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2622
• Fix typo when building docker on windows by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2620
• update TPL's by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2625
• Updating integratedTests Docs by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/2618
• Fix validation of injection streams by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2510
• blt submodule back to v0.5.3 by @wrtobin in https://github.com/GEOS-DEV/GEOS/pull/2630
• Adding list of types dispatch capabilities. by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2495
• Add MGR strategy for SolidMechanicsEmbeddedFractures by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2537
• Refactoring: centralize loop over test and introduce classes to defined decks by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2624
• Specifying npm/mermaid versions by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2648
• Update codespaces configuration by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2627
• Add variable density inside second order acoustic wave solver by @acitrain in https://github.com/GEOS-DEV/GEOS/pull/2548
• Build/modify apple builds by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2635
• fix fmtlib/fmt padding bug by @tbeltzun in https://github.com/GEOS-DEV/GEOS/pull/2650
• Add Group & Wrapper source XML line in errors by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/2404
• Initialization of coupled solver is added by @sohailwaziri in https://github.com/GEOS-DEV/GEOS/pull/2605
• update pugixml to 1.13 by @rrsettgast in https://github.com/GEOS-DEV/GEOS/pull/2654
• Make test for functions respect GEOS_ENABLE_TESTS by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2655
• simplify computeSeismoTrace - add writeSeismoTrace by @tbeltzun in https://github.com/GEOS-DEV/GEOS/pull/2641
• Use residual based criterion in CO2EOSSolver::solve by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2591
• Modification of trailing face check in SIF calculation to allow for intersecting fractures by @frankfeifan in https://github.com/GEOS-DEV/GEOS/pull/2662
• Fix python globbing to fix erroneous *py files by @wrtobin in https://github.com/GEOS-DEV/GEOS/pull/2677
• Fix deployment folder issues. by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2675
• Modified parallel plates permeability and updated discretization by @karimifard in https://github.com/GEOS-DEV/GEOS/pull/2623
• Improve C1PPU implementation by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2645
• Compositional multiphase fluid properties by @dkachuma in https://github.com/GEOS-DEV/GEOS/pull/2542
• Add more context to errors - physicsSolvers/ files by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/2448
• Add more context to errors - constitutive/ files by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/2447
• Add more context to errors - other files by @MelReyCG in https://github.com/GEOS-DEV/GEOS/pull/2449
• Moving time increment higher up in the hierarchy by @shabnamjs in https://github.com/GEOS-DEV/GEOS/pull/2611
• Update CoupledSolver.hpp to log statistics for subsolvers by @sohailwaziri in https://github.com/GEOS-DEV/GEOS/pull/2680
• Parallel import of conformal fractures by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2580
• Github Actions - Run CUDA jobs only when read to merge by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/2659
• Documentation of SolidMechanicsEmbeddedFracture solver by @CusiniM in https://github.com/GEOS-DEV/GEOS/pull/2617
• Local chop for CompositionalMultiphaseFVM by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2474
• ReadTheDocs equations by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/2727
• Verification of viscoplastic deformation with a relaxation problem by @jhuang2601 in https://github.com/GEOS-DEV/GEOS/pull/2647
• Adding ATS test filtering, updating docs by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/2697
• Documentation for mesh_doctor by @TotoGaz in https://github.com/GEOS-DEV/GEOS/pull/2684
• Solve compilation issue with NVCC on some PowerPC machines by @sframba in https://github.com/GEOS-DEV/GEOS/pull/2702
• Add a simple check for internal mesh partitioning by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2711
• More meaningful error message when mesh is missing in the input by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2712
• Add solver timers for logLevel > 1 by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2649
• Github Actions - Make CUDA jobs check and PR draft check dynamic by @bmhan12 in https://github.com/GEOS-DEV/GEOS/pull/2726
• Fixed bug in VTKUtilities related to sortedArrayManipulation::find by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2734
• Updating RTD theme by @cssherman in https://github.com/GEOS-DEV/GEOS/pull/2742
• Implemented pseudo acoustic wave propagation in vertical transverse isotropic (VTI) media by @Bertbk in https://github.com/GEOS-DEV/GEOS/pull/2544
• Fix for issue #2634 "Single Phase Well Prints Incorrect Mass Flow Rate" by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2736
• Minor docs updates by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2714
• rewrite wave propagation damping kernels by @tbeltzun in https://github.com/GEOS-DEV/GEOS/pull/2730
• support high order hex Q2 output in VTK by @tbeltzun in https://github.com/GEOS-DEV/GEOS/pull/2722
• Implemented fixes in water properties computation (density, enthalpy) by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2686
• More fixes in SurfaceGenerator to allow for intersecting cracks by @frankfeifan in https://github.com/GEOS-DEV/GEOS/pull/2705
• check build against TPLs #228 by @tbeltzun in https://github.com/GEOS-DEV/GEOS/pull/2717
• Output well rates to a simple csv file (in addition to the already implemented screen output) by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2737
• Fix EDFM cases from multiphaseFlowFractures by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2751
• Try to make log output more readable by @paveltomin in https://github.com/GEOS-DEV/GEOS/pull/2756
• support higher order ricker wavelets - simplify pulse computation by @tbeltzun in https://github.com/GEOS-DEV/GEOS/pull/2642
• Implemented diffusion and (preliminary) dispersion flux by @francoishamon in https://github.com/GEOS-DEV/GEOS/pull/2678
• feature/crook5/meshGeneration by @cmcrook5 in https://github.com/GEOS-DEV/GEOS/pull/2767
• damping faces/elements consistency by @tbeltzun in https://github.com/GEOS-DEV/GEOS/pull/2758

New Contributors

• @andrea-borio made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/1220
• @sytuannguyen made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/1271
• @mndiaye24 made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/1269
• @jhuang2601 made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/1474
• @tang39 made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/1468
• @mkhait made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/1591
• @XL64 made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/1741
• @labesse40 made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/1765
• @acitrain made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/1899
• @frankfeifan made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/1920
• @nmbader made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/1995
• @paloma-martinez made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/1956
• @aure-lily made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/1987
• @untereiner made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/2116
• @ryar9534 made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/1901
• @karimifard made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/2150
• @dkachuma made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/2192
• @kjdugan made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/2230
• @MelReyCG made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/2261
• @IsaacJu-debug made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/2333
• @jiemeng-total made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/2396
• @tbeltzun made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/2416
• @paveltomin made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/2468
• @sohailwaziri made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/2605
• @Bertbk made their first contribution in https://github.com/GEOS-DEV/GEOS/pull/2544

Full Changelog: https://github.com/GEOS-DEV/GEOS/compare/v0.2.0...v1.0.1

Scientific Software - Peer-reviewed - C++
Published by rrsettgast about 2 years ago

GEOS - v0.2.1-alpha

This is a pre-release created for the purpose of generating a DOI

What's Changed

• Fix potential difference calculations in molar variables by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1228
• Unit testing on Lassen - Laplace2D with serial direct solver by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1239
• Compile mathpresso targets iff mathpresso option is requested. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1246
• Improving lagrangian contact mechanics solver + LAI capabilities by @andrea-franceschini in https://github.com/GEOSX/GEOSX/pull/986
• change workflow documentation by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1244
• Provide docker solution to docker restriction by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1247
• Adding an mesh tools python package for GEOSX by @cssherman in https://github.com/GEOSX/GEOSX/pull/1224
• Improvements to EFEM solver. by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1147
• LC Spack Support by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1204
• Fixed bug in averageOverSecondDim with 1D arrays. by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1250
• Implemented dispatch for mimetic inner product selection by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1190
• WIP - Add Debug CUDA build to Travis CI by @bmhan12 in https://github.com/GEOSX/GEOSX/pull/1252
• Updates to Phase-Field Fracture - Stress Decomposition and Nonlinear Degradation Functions by @andrembcosta in https://github.com/GEOSX/GEOSX/pull/1144
• config-build works with Python3 by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1251
• Fixed bug related to matching perforations to reservoir elements by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1206
• Fixed bug linking to system tpls. by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1265
• Fix missing blob on GCP by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1276
• Virtual Element Method by @andrea-borio in https://github.com/GEOSX/GEOSX/pull/1220
• Travis Cuda Clang Debug Build by @bmhan12 in https://github.com/GEOSX/GEOSX/pull/1270
• Fixing wrong buffer in test. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1281
• Re-enable pinned memory. by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1283
• Update Hypre and CHAI TPLs by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1282
• Fix to default destructor missing by @herve-gross in https://github.com/GEOSX/GEOSX/pull/1268
• Correct a typo: sparisty by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1271
• Using clang-tidy to correct legacy namings by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1286
• Removed Doxygen warnings on Quartz by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1293
• Minor cameBack correction by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1294
• fix incorrectly reverted LvArray submodule by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1295
• Bugfix/sytuan/pangea build by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1253
• Remove redundant member variables in LaplaceFEM solver by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1298
• Apply renaming to function calls from Petsc LAI by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1300
• Fix to boundedPlane to avoid missing some embedded elements. by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1304
• Replace std::string with string by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1301
• Updating publications.rst by @joshua-white in https://github.com/GEOSX/GEOSX/pull/1287
• Fixed crash in SinglePhaseFVM with wells and fractures by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1306
• Apply renaming to update functions in CompositionalMultiphaseFlowKernels by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1310
• Modified well controls to match Intersect results by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1202
• Update TPL by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1314
• Update TPL by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1315
• Update submodule BLT to v0.3.6 by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1316
• Improve logs when product is not found in catalog. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1305
• Python interface by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1068
• Poroelasticity with embedded fractures by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1229
• Adding Drucker-Prager plasticity model by @joshua-white in https://github.com/GEOSX/GEOSX/pull/974
• Implement relative permeabilities with tables on device by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1277
• Corbett/references and exceptions by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1318
• Add hybrid FVM compositional multiphase solver by @francoishamon in https://github.com/GEOSX/GEOSX/pull/901
• Updated Build Guide by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1332
• Fix Debug-build compile fail on Lassen by @wrtobin in https://github.com/GEOSX/GEOSX/pull/1337
• Update CO2-brine model documentation by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1330
• Enable uncrustify for Pangea by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1339
• Fixed bug in the computation of the Peaceman index by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1341
• Re-enable Doxygen on Travis and fix existing warnings by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1345
• Update Caliper.rst by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1346
• Process external components after core components. by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1347
• Fix VTK output to put plot files under output path by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1343
• boomerAMG on GPU for SolidMechanicsLagrangianSSLE by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1054
• Implemented Dead-Oil model working on device by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1313
• Adding asyncronous kernel launching and restructuring the CommunicationTools routines to expose more async to allow for latency hiding by @wrtobin in https://github.com/GEOSX/GEOSX/pull/1319
• update TPLs for Pangea build by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1358
• Kernels for poroelastic solvers by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1353
• Implement CO2Brine model on GPU by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1325
• Small fixes to tutorials. by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1365
• Changes for Summit. by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1367
• Fixed debug compilation on Lassen by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1368
• Removing dead code + tiny cleanings by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1373
• Reducing visibility of neighborRank in NeighborCommunicator by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1375
• Low order acoustic wave equation by @mndiaye24 in https://github.com/GEOSX/GEOSX/pull/1269
• Feature/borio/vem refactoring by @andrea-borio in https://github.com/GEOSX/GEOSX/pull/1288
• Fixed compilation warning with clang+hypreGPU on Lassen by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1380
• WIP - circular dependencies / object libraries build by @bmhan12 in https://github.com/GEOSX/GEOSX/pull/1352
• Linear algebra cleanup by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1363
• Update Caliper.rst by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1391
• PVTPackage and PAMELA submodule names by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1396
• Bugfixes for CUDA build (multiphase model kernel wrappers, HypreVector::extract) by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1397
• Device Packing Optimization by @wrtobin in https://github.com/GEOSX/GEOSX/pull/1382
• Update host config to resolve Pangea build issue by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1395
• Fix silo output issue #1186 by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1400
• Bugfix/hypre lai by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1403
• Parallel synchronization of new embedded surfaces. by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1354
• Wrong cast in PTP by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1404
• Feature/wellbore mesh, Traction BC, convert {tensor input} by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1393
• add missing internal wellbore mesh integrated test baselines by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1406
• Adding a script to test for xml attribute coverage by @cssherman in https://github.com/GEOSX/GEOSX/pull/1102
• Adding timestamp information required by visit to vtk files by @cssherman in https://github.com/GEOSX/GEOSX/pull/1407
• Add LaplaceBase class by @andrea-borio in https://github.com/GEOSX/GEOSX/pull/1385
• Add pygeosx_tools python package by @cssherman in https://github.com/GEOSX/GEOSX/pull/1362
• Triaxial Driver by @joshua-white in https://github.com/GEOSX/GEOSX/pull/1364
• Cleanup of NeighborCommunicator by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1414
• LvArray update. by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1410
• Changed how the finite element kernel objects are constructed. by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1340
• DofManager cleanup by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1412
• Cleanup TractionBoundaryCondition by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1426
• Corbett/hypre cuda fix by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1441
• Adds support for hypre-cuda via spack. by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1445
• Fixed bug in compositional residual norm calculation with multiple regions by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1458
• Consistify temperature units for CO2-brine input by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1459
• Fixed the bug related to underscores in PAMELA region/surface names by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1460
• Mgr cleanup + Poromechanics solvers cleanup by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1401
• Fix Wedge node ordering by @AntoineMazuyer in https://github.com/GEOSX/GEOSX/pull/1454
• Improved well error/warning messages by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1472
• Output 4D fields in VTK by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1464
• Fix bugs and add unit tests for ComponentMask by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1473
• Implemented MGR recipes for flow solvers (hybrid FVM, wells) by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1471
• Implemented CFL numbers in compositional solver by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1466
• Change multiphase array layouts for CUDA builds by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1463
• Refactor VEM classes to allow computations on GPU by @andrea-borio in https://github.com/GEOSX/GEOSX/pull/1419
• VTK output improvements by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1484
• Update index.rst by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1444
• Proposal for type dispatch by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1487
• Move volumeBalance to MultipahseporomechanicsKernel. by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1488
• Dynamic Time History Collection by @wrtobin in https://github.com/GEOSX/GEOSX/pull/1360
• CMake build cleanup by @bmhan12 in https://github.com/GEOSX/GEOSX/pull/1433
• Specificy multiple input xml files from command line by @cssherman in https://github.com/GEOSX/GEOSX/pull/1465
• Remove static_if by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1493
• Cleanup/settgast/move ptp by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1498
• Replace element type strings with enum by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1499
• Force google's gsutil to use python3 by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1509
• Creation of a CoupleSolidModel to handle Poro-Solid-Damage models. by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1455
• Updating tutorial step08 by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1511
• Consider confining stress on SIF calculation and fracture propagation by @WuHuiLLNL in https://github.com/GEOSX/GEOSX/pull/1486
• Moved resizeFields to registerDataOnMesh in compositional solvers by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1512
• Docs for Analytical Verification of Drucker-Prager Model by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1474
• Add missing & Remove duplicated files in CMakeLists.txt by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1490
• Add type check for coupledSolid by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1518
• Fix schema generation crash + minor bugfixes by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1519
• XML Redundancy Tool by @cssherman in https://github.com/GEOSX/GEOSX/pull/1497
• Add new cluster target and clean CI by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1467
• Remove unused TPLs by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1527
• Changed default m_component value to -1 in FieldSpecificationBase to … by @jafranc in https://github.com/GEOSX/GEOSX/pull/1500
• Correct some XMLs by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1526
• Remove warning by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1530
• Update solid model documentation by @joshua-white in https://github.com/GEOSX/GEOSX/pull/1329
• Refactor PAMELA field import by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1532
• Docs for Solving Wellbore Problems with Poroplastic Solver by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1475
• Fixed bug in total density for surface condition injection rate by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1536
• Minor doc fixes by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1535
• Prevent VTK counter FPE by @herve-gross in https://github.com/GEOSX/GEOSX/pull/1540
• [Docs] coupled solid documentation by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1539
• Fix VTK crash with empty subregions by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1543
• Use of CompressibleSolid - Stencils refactoring - Transmissibility update by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1311
• Updated LvArray. by @corbett5 in https://github.com/GEOSX/GEOSX/pull/1551
• Implement Black-Oil model on GPU by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1537
• Multiphase fluid model cleanup by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1554
• Fix for reference porosity import by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1557
• Elastic Orthotropic constitutive model by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1323
• Bugfix for #1550 by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1556
• Implemented time-dependent well rate and bhp tables by @tang39 in https://github.com/GEOSX/GEOSX/pull/1468
• Doc for cased wellbore problem by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1542
• Fix #1524 by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1558
• Change to TotalEnergies by @herve-gross in https://github.com/GEOSX/GEOSX/pull/1562
• Tutorial updates by @joshua-white in https://github.com/GEOSX/GEOSX/pull/1538
• Added calls to reserve in transmissibilities precomputation by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1572
• Move xml files of wellbore problems to benchmark folders by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1574
• Documentation for docker development. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1567
• Doc for deviated elastic wellbore by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1571
• Correct wrong markdown formatting by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1577
• Docs/castelletto1/update publications by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1578
• Add version output by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1581
• Proppant solver refactoring by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1559
• Improve version header generation by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1583
• Projection EDFM by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1565
• Add Ninja job pool limit options by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1590
• Fixed negative cell volume with reverseZ on CPG by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1589
• Poromechanics kernels refactoring by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1596
• Use {fmt} for message formatting by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1568
• update TPL in Pangea host config by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1602
• Adding Cam-Clay/Delft-Egg Plasticity Models by @shabnamjs in https://github.com/GEOSX/GEOSX/pull/1336
• Xcode build fix by @joshua-white in https://github.com/GEOSX/GEOSX/pull/1582
• Add TPL note to QuickStart by @joshua-white in https://github.com/GEOSX/GEOSX/pull/1605
• [Doc] Verification example with MCC plasticity model by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1575
• [Doc] advanced example for simulating proppant slot test by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1573
• [Doc] Fixed some inconsistencies and misprints in the updated tutorial by @mkhait in https://github.com/GEOSX/GEOSX/pull/1591
• Keep neighbors with one-way ghost exchange by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1599
• Updating the input xml parsing, adding two xml unit tests by @cssherman in https://github.com/GEOSX/GEOSX/pull/1580
• Correct some XMLs by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1608
• Disabled cross-flow when well is shut down by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1601
• Doc for deviated PoroElastic wellbore by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1585
• Fix broken links in tutorial examples by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1614
• Add pygeosx tutorials and update advanced xml features by @cssherman in https://github.com/GEOSX/GEOSX/pull/1609
• Implemented contact relation update classes by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1576
• Bugfixes for time history functionality. by @wrtobin in https://github.com/GEOSX/GEOSX/pull/1612
• update copyright and author on rtd configuration file by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1618
• Allow nested XML includes by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1617
• Porosity initialization by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1595
• Automatic allocation of compound constitutive relations by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1584
• Adding a Pecan CPU target alongside the GPU one. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1625
• Remove memory leak when creating already created HypreVector. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1628
• restructure relationship between tests, examples, benchmarks by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1569
• Correct handling of relative paths with multiple input files by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1634
• Improved/added table relative permeability/capillary pressure by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1633
• Update "Included Files" section of User Guide by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1621
• Add MPI barrier after creating composite input XML by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1639
• [Doc] advanced example of Kirsch wellbore problem by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1635
• [Doc] Verification example of a single fracture under shear compression by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1615
• [Doc] KGD example with toughness dominated by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1610
• Implemented aquifer boundary condition by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1561
• Repairing a few XML files in the repo by @herve-gross in https://github.com/GEOSX/GEOSX/pull/1641
• Adding features for Wellbore meshing by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1424
• Added aquifer documentation by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1648
• XML reorganization # 2 by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1643
• Linear combination of mass balance equations for compositional multiphase flow solvers by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1646
• Update Brew version for MPI by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1658
• Refactored SourceFlux application in compositional solvers by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1654
• Add PR and build numbers to deployment locations by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1665
• Repair/remove dead symlinks. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1664
• [Docs] Example of KGD fracture with viscosity dominated regime by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1642
• Update TPL for Pangea build by @sytuannguyen in https://github.com/GEOSX/GEOSX/pull/1649
• Structure of the wave propagator by @mndiaye24 in https://github.com/GEOSX/GEOSX/pull/1470
• Unify interfaces of FEM and VEM classes by @andrea-borio in https://github.com/GEOSX/GEOSX/pull/1489
• [docs] on win install v0 by @jafranc in https://github.com/GEOSX/GEOSX/pull/1622
• [Doc] advanced example of intersected fractures by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1651
• Remove duplicated SolverBase::getDiscretization by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1667
• Fix ReadTheDocs builds by @bmhan12 in https://github.com/GEOSX/GEOSX/pull/1666
• Fixed division by zero in getHistoryMetadata by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1674
• Feature/castelletto1/lai unit testing by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1669
• Implemented hydrostatic equilibrium initial condition by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1607
• [Doc] extend sneddon problem to different solvers by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1659
• Add solid internal energy. by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1660
• Linear algebra changes by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1668
• Added hydrostatic equilibrium documentation by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1640
• Adding CO2 brine constitutives: brine density and viscosity based on Ezrokhi`s method by @mkhait in https://github.com/GEOSX/GEOSX/pull/1647
• Implemented new interface for accumulation and volume balance kernels by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1672
• Contact relationships interface refactoring by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1662
• Check that PR is assigned by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1691
• LAI vector refactor - zero copy assembly by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1686
• Fix #1694 by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1695
• Fix advanced problems with LagrangeContact by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1692
• Added logging for boundary conditions in flow solvers by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1676
• Add host-configs for Sherlock by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1697
• Change github REST call addresses by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1703
• Reduce logs for packaging targets by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1705
• Correct Dockerfile indentation. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1707
• Refactor enthalpy and internal energy for CO2 brine by @mkhait in https://github.com/GEOSX/GEOSX/pull/1689
• Extrinsic mesh data for flow solvers by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1702
• Move to ubuntu 20.04 and gcc 9 & 10 by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1700
• Implemented extrinsic data for multiphase constitutive models by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1709
• PVTDriver by @joshua-white in https://github.com/GEOSX/GEOSX/pull/1711
• Fixed Pamela parallel properties import (inside GEOSX) by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1713
• Fixing petrowiki links by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1716
• Implemented new kernel interface for compositional properties by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1698
• Implemented new kernel interface for flux by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1696
• [Doc] Mandel's poroelastic problem by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1684
• Remove accessor member variables from flow/well solvers by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1718
• Reduce visibility of nested structures after refactoring. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1720
• [Feature] implement fault permeability models by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1564
• Added validation example for Problem 1.1 of Class (2009) by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1721
• Implemented multivariable multidimensional interpolators for future OBL solver by @mkhait in https://github.com/GEOSX/GEOSX/pull/1714
• Improved the Newton solver for solubility and density in CO2-brine fluid by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1729
• Implemented J-function capillary pressure by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1734
• Implemented thermal conductivity models by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1732
• Fix data access for permuted 2D arrays in functions by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1740
• Docs/castelletto1/update publications by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1744
• Integrated tests on LassenSerial direct solver in all integrated tests by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1737
• Improvements towards arbitrary polyhedral grids by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1418
• Correct traits and add template getter protection. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1747
• Updating geosxxmltools installation method by @cssherman in https://github.com/GEOSX/GEOSX/pull/1624
• Fixed pure water viscosity computation in CO2BrinePhillipsFluid by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1739
• Simplification of the return_script in travis. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1749
• Updated tutorial 3 with correct depths by @herve-gross in https://github.com/GEOSX/GEOSX/pull/1745
• Added warning and error messages in fluid and wells by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1678
• Upgrade to vtk 9.0.3 by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1752
• buildrootdir/installrootdir options in config-build.py by @XL64 in https://github.com/GEOSX/GEOSX/pull/1741
• Bugfix/castelletto1/issue 1708 by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1754
• Enabling multiple mesh bodies by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1682
• Unified mass/molar conversions in fluid models by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1760
• VTK Mesh Generator by @AntoineMazuyer in https://github.com/GEOSX/GEOSX/pull/1453
• Added flag to disable crossflow in wells by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1757
• Fixing Tutorial 3 by @herve-gross in https://github.com/GEOSX/GEOSX/pull/1770
• Removes two double-quotes (XML invalid otherwise) by @herve-gross in https://github.com/GEOSX/GEOSX/pull/1769
• Correct namespaces which were not respecting camelCase convention by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1773
• Remove useless include by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1772
• Implemented Killough relative permeability hysteresis by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1706
• Delay initialization of HistoryOuput by @labesse40 in https://github.com/GEOSX/GEOSX/pull/1765
• Fix face pressure BC with variable permeability by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1785
• config file for pangea3 by @XL64 in https://github.com/GEOSX/GEOSX/pull/1748
• Set an error if non-supported object is requested for Pack. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1782
• VEM support in FEM kernel interface by @andrea-borio in https://github.com/GEOSX/GEOSX/pull/1690
• [Doc] add validation example based on the experimental study of a KGD fracture by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1780
• Combined multifluid derivatives to reduce fluid kernel wrapper size by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1779
• Protect against implicit C++ relations by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1778
• PressureAtReceiversNp1 modification and SourceValue array for rhs calculation by @labesse40 in https://github.com/GEOSX/GEOSX/pull/1764
• Activated thermal option in CO2-brine fluid model by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1755
• Fix a couple minor issues with XML preprocessor by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1787
• Fix the reported issue (#1623) on running hydraulic fracturing example in tutorial by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1728
• Restored compatibility checks in compositional solvers by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1793
• Feature/besset pygeosx by @labesse40 in https://github.com/GEOSX/GEOSX/pull/1704
• Add tpls include in dummy cmake for doc. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1777
• EFEM Linear solver strategies by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1549
• fix clang10 issue by modifying dependency in unitTests CmakeLists by @labesse40 in https://github.com/GEOSX/GEOSX/pull/1807
• Revert "fix clang10 issue by modifying dependency in unitTests CmakeLists" by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1812
• Improve VisIt Compatibility by @cssherman in https://github.com/GEOSX/GEOSX/pull/1758
• Documentation: constitutive models in the developer guide by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1570
• Fixed the computation of the initial total mass density by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1797
• Update hypre, localIndex to int, add smoke and benchmark cases for ECP problem. by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1767
• Correct argument order inconsistency. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1820
• Group::m_wrappers[name] can be different from Group::m_wrappers[name]->getName() by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1803
• Refactored compositional flow unit tests by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1809
• Poromechanics kernels refactoring by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1600
• Cleaned up isPointInsidePolyhedron by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1822
• [Doc] Verification example of a radial frac in toughness dominated regime by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1798
• Correct implementation for right-preconditioned BiCGStab by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1828
• *packByIndex* functions of Wrapper depends on sizedFromParent() == 1. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1792
• VTK import improvements by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1791
• Introduce ContactSolverBase by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1677
• Improve packing naming conventions by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1831
• Fixed the double free corruption problem in the unit tests after integration of pygeosx by @sframba in https://github.com/GEOSX/GEOSX/pull/1813
• Fixed an input validation bug in well controls by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1837
• Moving sphinx documentation scripts to their own files by @cssherman in https://github.com/GEOSX/GEOSX/pull/1796
• Moved fluid variables at time n to multifluid constitutive model by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1827
• Update Publications.rst by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1849
• Correct Group::pack by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1850
• Improve config-build.py and put cache option at the end of the command line. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1832
• Improved phase internal energy computation by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1846
• Default pack/unpack for non packable/unpackable data. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1788
• Change default behavior of pack member functions w.r.t. wrapper names by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1858
• Better warning message when wrapper is not here. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1864
• Add another verification example of a radial frac developed in viscosity dominated regime by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1821
• Increased readibility for hypre interface by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1857
• Fix performance regression of mesh map generation by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1847
• Verification example of a PKN frac developed in viscosity dominated regime by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1838
• Fixing ordering for pyramids by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1866
• Fix missing multibody loops in SolidMechanicsLagrangianFEM solver. by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1862
• Add energy balance equation to Compositional solver. by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1225
• Enable Coulomb Friction for EFEM Solvers by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1840
• Update blt to v0.5.1 by @victorapm in https://github.com/GEOSX/GEOSX/pull/1879
• Update hdf5 silo conduit by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1874
• Improve VTK mesh distribution via ParMETIS by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1869
• Implemented (field_n,field) flow formulation by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1880
• Renaming prism to wedge by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1885
• Implemented well improvements by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1886
• PVTPackage update by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1893
• Computing cell volumes using numerical integration by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1887
• Fix VTK element output by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1895
• Bugfix/castelletto1/pamela wedge import by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1896
• Adding check for duplicate named xml entries by @cssherman in https://github.com/GEOSX/GEOSX/pull/1868
• Add OBL-based solver, analog of Super Engine in DARTS by @mkhait in https://github.com/GEOSX/GEOSX/pull/1733
• add reinit method to waveSolverBase by @labesse40 in https://github.com/GEOSX/GEOSX/pull/1808
• Fix misplaced initialization for boundary tags by @acitrain in https://github.com/GEOSX/GEOSX/pull/1899
• Add a tutorial example for the triaxialDriver by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1894
• Add region list to field synchronization by @CusiniM in https://github.com/GEOSX/GEOSX/pull/1878
• Using mermaid for class diagrams by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1897
• Fix function interface for PorousDelftEgg and PorousModifiedCamClay by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1907
• New CPR-like MGR recipes for compositional flow by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1712
• Update Publications.rst by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1916
• added check on ghostRank when checking if sources and receivers are local by @sframba in https://github.com/GEOSX/GEOSX/pull/1914
• Little time history reorganization by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1873
• Implemented single-phase accumulation kernel class by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1881
• Update TPLs after hypre patch by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1917
• Fixed parallel field import in VTKMeshGenerator by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1918
• Added MGR recipe for thermal compositional solver by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1836
• Adding pentagonal and hexagonal prism cells by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1902
• Fixed single-phase well MGR recipes by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1921
• Correct wrong make -j command line by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1923
• Test plantuml for the doc by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1892
• Feature/castelletto1/suppress move logging by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1924
• Attempting to make the xml processing mpi aware by @cssherman in https://github.com/GEOSX/GEOSX/pull/1781
• Seismic traces: bugfix and unit test by @sframba in https://github.com/GEOSX/GEOSX/pull/1900
• Fixed misleading behavior in source flux boundary condition by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1931
• update pangea3 host-config file and remove hard-coded Python version by @XL64 in https://github.com/GEOSX/GEOSX/pull/1938
• Remove mermaid support and use plantuml instead. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1946
• Use Gitlab CI for nightly testing by @bmhan12 in https://github.com/GEOSX/GEOSX/pull/1888
• Fix some warning when compiled with some version of gcc by @acitrain in https://github.com/GEOSX/GEOSX/pull/1929
• missing mass intialization by @XL64 in https://github.com/GEOSX/GEOSX/pull/1954
• Adding an extra string parsing check for attributes by @cssherman in https://github.com/GEOSX/GEOSX/pull/1928
• Implemented a task for pre/post equilibration in coupled problems by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1898
• fix OpenBLAS in Pangea3 host-config, add pygeosx to install process by @XL64 in https://github.com/GEOSX/GEOSX/pull/1951
• Fix VTK memory leak by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1950
• Refactored well solvers before coupling with poromechanics by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1890
• Formatting schema string type names to avoid compiler-related diffs by @cssherman in https://github.com/GEOSX/GEOSX/pull/1961
• Implement a thermal single phase flow solver by @frankfeifan in https://github.com/GEOSX/GEOSX/pull/1920
• Simplify smoke test for ProppantSlotTest by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1959
• Implemented VTK/Silo field selection from input file by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1912
• Format python files with YAPF by @cssherman in https://github.com/GEOSX/GEOSX/pull/1947
• Azure Pipelines by @bmhan12 in https://github.com/GEOSX/GEOSX/pull/1969
• Move gcc 10 debug job back to Travis by @bmhan12 in https://github.com/GEOSX/GEOSX/pull/1988
• [Doc] Verification of induced stresses along a fault in a pressurized reservoir by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1962
• Point to last build of TPL PR #187 by @XL64 in https://github.com/GEOSX/GEOSX/pull/1966
• LVArray PR that adds GPU sync when converting to numpy array by @XL64 in https://github.com/GEOSX/GEOSX/pull/1955
• Implemented solver statistics by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1979
• Reorganize verification examples by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/1974
• Adding method to import nodesets in vtk meshes, convert abaqus meshes to vtu by @cssherman in https://github.com/GEOSX/GEOSX/pull/1942
• Implemented coupled solvers in the new style by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1978
• Update/hypre chai raja by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1949
• Implemented face-based Dirichlet boundary condition in compositional solver by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1986
• Restore Pangea2 deployment by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/1999
• Bugfix/castelletto1/tutorial3 by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1990
• Add PT-Scotch as a partitioning method option in VTKMesh by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1996
• Use brew's tap to install precise version of open-mpi by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/2008
• Bugfix/mbader/wave propagation source injection mpi by @nmbader in https://github.com/GEOSX/GEOSX/pull/1995
• Implemented output of reservoir statistics by @francoishamon in https://github.com/GEOSX/GEOSX/pull/1735
• Add VTK Outputs wrappers for PyGEOSX by @paloma-martinez in https://github.com/GEOSX/GEOSX/pull/1956
• Feature/ascuotto/vtk import by @aure-lily in https://github.com/GEOSX/GEOSX/pull/1987
• Fix TPL discrepancy between travis and azure by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/2013
• Replacing PAMELA mesh with VTK mesh by @castelletto1 in https://github.com/GEOSX/GEOSX/pull/1992
• Compute cell stencils between cell regions only. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/2012
• Move fracture fields from EdgeManager to FaceElementSubRegion. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/2011
• Re-enable unit tests in OSX CI and fix catalog registration by @klevzoff in https://github.com/GEOSX/GEOSX/pull/2019
• Improved parsing speed for table files by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1983
• create a MeshObjectPath class to manage specification of paths to mesh objects by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/1963
• Cleanup of face/cell boundary condition in flow solvers by @francoishamon in https://github.com/GEOSX/GEOSX/pull/2001
• Using large VMs travis by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/2025
• Re-enable object libraries build by @bmhan12 in https://github.com/GEOSX/GEOSX/pull/2018
• Feature/mbader/second order acoustic pml by @nmbader in https://github.com/GEOSX/GEOSX/pull/1997
• Use VTK Global IDs if available by @sframba in https://github.com/GEOSX/GEOSX/pull/2017
• Add FaceBlock abstraction by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/2034
• Remove hardcoded name "faceElementSubRegion" and "embeddedSurfaceSubRegion". by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/2036
• Update TPL by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/2038
• perform difference modulo 2PI on atan2 testings by @XL64 in https://github.com/GEOSX/GEOSX/pull/2030
• Multi-level discretization + High order Gauss-Lobatto for SEM by @labesse40 in https://github.com/GEOSX/GEOSX/pull/1324
• Verification of two-phase flow in porous media with Buckley-Leverett problem by @jhuang2601 in https://github.com/GEOSX/GEOSX/pull/2026
• Enabled wells with poromechanics by @francoishamon in https://github.com/GEOSX/GEOSX/pull/2005
• Added Newton global damping by default in compositional solvers by @francoishamon in https://github.com/GEOSX/GEOSX/pull/2039
• add multiBody/multiLevel support to VTK output system by @andrembcosta in https://github.com/GEOSX/GEOSX/pull/2027
• Implemented small changes in OBL by @francoishamon in https://github.com/GEOSX/GEOSX/pull/2044
• Rollback Azure Pipelines Jobs To Travis by @bmhan12 in https://github.com/GEOSX/GEOSX/pull/2037
• split fracture stencil and trigger fracture stencil for imported faults by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/2048
• Added support for net-to-gross by @francoishamon in https://github.com/GEOSX/GEOSX/pull/2033
• Remove script and duplicated variables. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/2049
• Skipped the shallow mesh copies in the vtk output by @francoishamon in https://github.com/GEOSX/GEOSX/pull/2050
• travis stage for draft PR by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/2053
• Fix quick start doc for submodules' fallback. by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/2055
• Improve performance of ghost map unpacking by @klevzoff in https://github.com/GEOSX/GEOSX/pull/1989
• Force GEOSX organisation in submodules by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/2058
• Removed MPICXXBOOL by @corbett5 in https://github.com/GEOSX/GEOSX/pull/2060
• Fixed a crash in the statistics on GPU by @francoishamon in https://github.com/GEOSX/GEOSX/pull/2061
• Adding trapped mass as output from compositional statistics by @jafranc in https://github.com/GEOSX/GEOSX/pull/2052
• Implemented time stepping based on state change by @francoishamon in https://github.com/GEOSX/GEOSX/pull/2062
• Add prism 7+ support by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/2051
• Add openmp and/or hdf5 to the dependencyList when needed with slurm MPI by @XL64 in https://github.com/GEOSX/GEOSX/pull/2067
• Add python tools documentation to sphinx by @cssherman in https://github.com/GEOSX/GEOSX/pull/1991
• Add support for NVTX in cuda traces using existing instrumentation by @XL64 in https://github.com/GEOSX/GEOSX/pull/1980
• Remove discretization attribute from SurfaceGenerator. by @CusiniM in https://github.com/GEOSX/GEOSX/pull/2077
• Increased well verbosity; made well shut down more robust by @francoishamon in https://github.com/GEOSX/GEOSX/pull/2078
• add support for apple M1 chip by @rrsettgast in https://github.com/GEOSX/GEOSX/pull/2074
• Renable parallelDevicePolicy in SEM by @XL64 in https://github.com/GEOSX/GEOSX/pull/2081
• Low order elastic wave equation by @acitrain in https://github.com/GEOSX/GEOSX/pull/1865
• Use real32 floats in WaveSolver by @XL64 in https://github.com/GEOSX/GEOSX/pull/2032
• fix compilation with nvtx support enabled by @XL64 in https://github.com/GEOSX/GEOSX/pull/2096
• Implemented source flux boundary condition in OBL by @francoishamon in https://github.com/GEOSX/GEOSX/pull/2088
• Reorganize fractures input files by @CusiniM in https://github.com/GEOSX/GEOSX/pull/2094
• Add ubuntu 22.04 LTS Jammy to travis by @TotoGaz in https://github.com/GEOSX/GEOSX/pull/2090

New Contributors

• @andrea-borio made their first contribution in https://github.com/GEOSX/GEOSX/pull/1220
• @sytuannguyen made their first contribution in https://github.com/GEOSX/GEOSX/pull/1271
• @mndiaye24 made their first contribution in https://github.com/GEOSX/GEOSX/pull/1269
• @jhuang2601 made their first contribution in https://github.com/GEOSX/GEOSX/pull/1474
• @tang39 made their first contribution in https://github.com/GEOSX/GEOSX/pull/1468
• @mkhait made their first contribution in https://github.com/GEOSX/GEOSX/pull/1591
• @XL64 made their first contribution in https://github.com/GEOSX/GEOSX/pull/1741
• @labesse40 made their first contribution in https://github.com/GEOSX/GEOSX/pull/1765
• @victorapm made their first contribution in https://github.com/GEOSX/GEOSX/pull/1879
• @acitrain made their first contribution in https://github.com/GEOSX/GEOSX/pull/1899
• @frankfeifan made their first contribution in https://github.com/GEOSX/GEOSX/pull/1920
• @nmbader made their first contribution in https://github.com/GEOSX/GEOSX/pull/1995
• @paloma-martinez made their first contribution in https://github.com/GEOSX/GEOSX/pull/1956
• @aure-lily made their first contribution in https://github.com/GEOSX/GEOSX/pull/1987

Full Changelog: https://github.com/GEOSX/GEOSX/compare/v0.2.0...v0.2.1-alpha

Scientific Software - Peer-reviewed - C++
Published by rrsettgast about 3 years ago

GEOS - v0.2.0

This release contains many infrastructure improvements and the addition of many basic capabilities.

• Extensive updates to Data Repository
• Discretization
  • Finite element interface
  • Kernel launching interface looping abstraction
  • Element formulations for 1st order:
    • 8-node hexahedron
    • 6-node wedge
    • 5-node pyramid
    • 4-node tetrahedron
  • Cell-centered Finite Volume method with Two-point Flux Approximation (TPFA)
  • Hybrid Finite Volume method with TPFA and quasi-TPFA inner products
• Physics Solvers
  • Solid mechanics explicit on GPU, implicit assembly on GPU
  • Single-phase flow (assembly on GPU)
  • Classical FVM and Hybrid FVM formulations
  • Porous matrix and DFM fracture flow
  • Compositional multiphase flow (assembly on GPU)
  • Fully implicit isothermal overall composition formulation
  • Fluid constitutive models:
    • Equation-of-state hydrocarbon compositional
    • Three-phase extended black-oil
    • Two-phase CO2-brine
  • Multi-segmented wells for single phase and compositional multiphase flow (assembly on GPU)
  • Surface Generation
  • Topology change (legacy GEOS approach)
• Embedded Discrete Fractures
  • Enriched finite element method for the discretization of the mechanics
  • Piecewise constant displacement jump enrichment
  • Hydrofracture solver (legacy GEOS approach)
  • Small strain aligned contact using Lagrange multipliers
  • Discrete fracture model using a low-order stabilized mixed finite element method
  • Proppant Transport Solver
  • FVM formulation
  • Major physical processes modeled:
    • Proppant-fluid slurry flow and multicomponent transport in fractures
    • Proppant gravitational settling
    • Proppant bed build-up and development space
• Mesh Structure
  • Introduced the concept of extrinsic mesh data
  • Fracture elements to represent FV cells in fractures
• VTK output
• Linear algebra interface layers for Hypre, Trilinos, Petsc
  • Common interface for supported linear algebra packages
  • Krylov solvers (CG, GMRES, BiCGSTAB)
  • Preconditioners (algebraic multigrid, incomplete factorizations)
  • Block matrix and vector support
  • Serial and parallel direct solvers

Scientific Software - Peer-reviewed - C++
Published by rrsettgast about 5 years ago