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Recent Releases of brainreg

brainreg - v1.0.13

What's Changed

  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/239
  • [Feature] Specify units for voxel sizes in napari plugin by @thisisrick25 in https://github.com/brainglobe/brainreg/pull/238
  • Remove extra QT library setup step by @IgorTatarnikov in https://github.com/brainglobe/brainreg/pull/240
  • Exclude napari 0.6.0, enforce >= 0.5 by @IgorTatarnikov in https://github.com/brainglobe/brainreg/pull/244

New Contributors

  • @thisisrick25 made their first contribution in https://github.com/brainglobe/brainreg/pull/238

Full Changelog: https://github.com/brainglobe/brainreg/compare/v1.0.12...v1.0.13

- Python
Published by IgorTatarnikov 9 months ago

brainreg - v1.0.12

What's Changed

  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/235
  • Pin napari by @IgorTatarnikov in https://github.com/brainglobe/brainreg/pull/237

Full Changelog: https://github.com/brainglobe/brainreg/compare/v1.0.11...v1.0.12

- Python
Published by alessandrofelder 10 months ago

brainreg - v1.0.11

What's Changed

  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/209
  • Standardise contact information in readme by @adamltyson in https://github.com/brainglobe/brainreg/pull/210
  • Mark failing napari tests as xfail by @IgorTatarnikov in https://github.com/brainglobe/brainreg/pull/213
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/212
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/216
  • Fix caching in CI by @IgorTatarnikov in https://github.com/brainglobe/brainreg/pull/217
  • Schedule tests to run weekly by @IgorTatarnikov in https://github.com/brainglobe/brainreg/pull/218
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/219
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/220
  • Notify slack on scheduled test failure by @IgorTatarnikov in https://github.com/brainglobe/brainreg/pull/221
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/224
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/225
  • bump pyvista action version 2->3 by @alessandrofelder in https://github.com/brainglobe/brainreg/pull/226
  • Replaced NIU upload action with separate steps by @IgorTatarnikov in https://github.com/brainglobe/brainreg/pull/228
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/229
  • Use pypa/gh-action-pypi-publish stable release v1 by @lochhh in https://github.com/brainglobe/brainreg/pull/231
  • update regression test data by @alessandrofelder in https://github.com/brainglobe/brainreg/pull/230
  • Update code coverage badge to main branch by @adamltyson in https://github.com/brainglobe/brainreg/pull/232
  • Update Python versions to adhere to SPEC 0 and remove Intel testing on macOS by @adamltyson in https://github.com/brainglobe/brainreg/pull/233
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/234

New Contributors

  • @IgorTatarnikov made their first contribution in https://github.com/brainglobe/brainreg/pull/213
  • @lochhh made their first contribution in https://github.com/brainglobe/brainreg/pull/231

Full Changelog: https://github.com/brainglobe/brainreg/compare/v1.0.10...v1.0.11

- Python
Published by adamltyson 12 months ago

brainreg - v1.0.10

What's Changed

  • Update caching by @adamltyson in https://github.com/brainglobe/brainreg/pull/201
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/203
  • Update supported Python versions by @adamltyson in https://github.com/brainglobe/brainreg/pull/204
  • Fix hemisphere bug in check_orientation by @alessandrofelder in https://github.com/brainglobe/brainreg/pull/207
  • Enforce latest version of scikit-image by @adamltyson in https://github.com/brainglobe/brainreg/pull/208

Full Changelog: https://github.com/brainglobe/brainreg/compare/v1.0.9...v1.0.10

- Python
Published by adamltyson over 1 year ago

brainreg - v1.0.9

What's Changed

  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/197
  • Add descriptive parameter names by @adamltyson in https://github.com/brainglobe/brainreg/pull/198
  • Update use of brainglobe_utils image IO submodule by @adamltyson in https://github.com/brainglobe/brainreg/pull/199

Full Changelog: https://github.com/brainglobe/brainreg/compare/v1.0.8...v1.0.9

- Python
Published by alessandrofelder almost 2 years ago

brainreg - v1.0.8

What's Changed

  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/187
  • Add codecov token by @K-Meech in https://github.com/brainglobe/brainreg/pull/189
  • Import header from brainglobe-utils by @K-Meech in https://github.com/brainglobe/brainreg/pull/188
  • Harmonise napari plugin and CLI entry points by @adamltyson in https://github.com/brainglobe/brainreg/pull/193
  • Allow number of free CPU cores to be set in the GUI by @adamltyson in https://github.com/brainglobe/brainreg/pull/195
  • make non-conda mac tests use intel chips by @alessandrofelder in https://github.com/brainglobe/brainreg/pull/196

Full Changelog: https://github.com/brainglobe/brainreg/compare/v1.0.7...v1.0.8

- Python
Published by adamltyson almost 2 years ago

brainreg - v1.0.7

What's Changed

  • allow for additional channels with same name by @alessandrofelder in https://github.com/brainglobe/brainreg/pull/185
  • Refactor to use ImageIOLoadException from brainglobe_utils by @K-Meech in https://github.com/brainglobe/brainreg/pull/186

New Contributors

  • @K-Meech made their first contribution in https://github.com/brainglobe/brainreg/pull/186

Full Changelog: https://github.com/brainglobe/brainreg/compare/v1.0.6...v1.0.7

- Python
Published by K-Meech almost 2 years ago

brainreg - v1.0.6

Bump to brainglobe-atlasapi dependency

bg-atlasapi has been renamed to brainglobe-atlasapi, so we now depend on the new package.

What's Changed

  • Update CITATION.cff by @willGraham01 in https://github.com/brainglobe/brainreg/pull/177
  • bg-atlasapi -> brainglobe-atlasapi by @willGraham01 in https://github.com/brainglobe/brainreg/pull/182

Full Changelog: https://github.com/brainglobe/brainreg/compare/v1.0.5...v1.0.6

- Python
Published by willGraham01 almost 2 years ago

brainreg - v1.0.5

Bump brainglobe-utils dependency

imio has been merged into brainglobe-utils, so we should avoid fetching the deprecated version.

What's Changed

  • Update testanddeploy.yml by @alessandrofelder in https://github.com/brainglobe/brainreg/pull/178
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/179
  • Update imio dependency by @willGraham01 in https://github.com/brainglobe/brainreg/pull/181

New Contributors

  • @alessandrofelder made their first contribution in https://github.com/brainglobe/brainreg/pull/178

Full Changelog: https://github.com/brainglobe/brainreg/compare/v1.0.4...v1.0.5

- Python
Published by willGraham01 about 2 years ago

brainreg - v1.0.4

Bump bg-space to brainglobe-space

Switches our dependency on the old bg-space package (now depreciated) to brainglobe-space.

What's Changed

  • Bump to brainglobe-space dependency by @willGraham01 in https://github.com/brainglobe/brainreg/pull/176

Full Changelog: https://github.com/brainglobe/brainreg/compare/v1.0.3...v1.0.4

- Python
Published by willGraham01 about 2 years ago

brainreg - v1.0.3

What's Changed

  • Update pyproject.toml by @willGraham01 in https://github.com/brainglobe/brainreg/pull/173
  • Update brainglobe-napari-io import by @adamltyson in https://github.com/brainglobe/brainreg/pull/172
  • Update GH actions badge by @adamltyson in https://github.com/brainglobe/brainreg/pull/175
  • Update metadata for napari hub by @adamltyson in https://github.com/brainglobe/brainreg/pull/174

Full Changelog: https://github.com/brainglobe/brainreg/compare/v1.0.2...v1.0.3

- Python
Published by adamltyson about 2 years ago

brainreg - v1.0.2

What's Changed

  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/169
  • Fix tests by @adamltyson in https://github.com/brainglobe/brainreg/pull/170

Full Changelog: https://github.com/brainglobe/brainreg/compare/v1.0.1...v1.0.2

- Python
Published by adamltyson about 2 years ago

brainreg - Update `napari` trove classifier

Add napari trove classifier

Added a classifier to the package metadata so that it is listed on napari-hub, and can be found from the napari GUI.

What's Changed

  • Force headless display in CI by @willGraham01 in https://github.com/brainglobe/brainreg/pull/166
  • Add napari trove classifier to package by @willGraham01 in https://github.com/brainglobe/brainreg/pull/168

Full Changelog: https://github.com/brainglobe/brainreg/compare/v1.0.0...v1.0.1

- Python
Published by willGraham01 about 2 years ago

brainreg - Version 1 release!

Version 1 Release :partying_face:

Detailed functionality changes are listed in our blog post.

High-level change is the merging of brainreg and its napari plugin, previously known as brainreg-napari. All functionality has been preserved: - Anything that was previously from brainreg import X in your scripts is now from brainreg.core import X - Anything that was previously from brainreg_napari import X in your scripts is now from brainreg.napari import X - If you were building on top of the napari plugin, it is now just called brainreg rather than brainreg-napari. This is an under-the-hood name change, users can still find it in napari's dropdown menu under the name "Atlas Registration".

This also incorporates the renaming of brainreg-segment to brainglobe-segmentation.

Users should to uninstall brainreg-napari and brainreg-segment from their environments before updating.

What's Changed

  • Set pre-commit autoupdate frequency to monthly by @adamltyson in https://github.com/brainglobe/brainreg/pull/137
  • Fix pandas FutureWarning by @willGraham01 in https://github.com/brainglobe/brainreg/pull/144
  • Use safe_concat function from brainglobe-utils by @adamltyson in https://github.com/brainglobe/brainreg/pull/148
  • Version 1 release :partying_face: by @willGraham01 in https://github.com/brainglobe/brainreg/pull/146

Full Changelog: https://github.com/brainglobe/brainreg/compare/v0.5.1...v1.0.0

- Python
Published by willGraham01 over 2 years ago

brainreg - 0.5.0

What's Changed

  • update versions tested by @adamltyson in https://github.com/brainglobe/brainreg/pull/104
  • Update testing by @dstansby in https://github.com/brainglobe/brainreg/pull/107
  • Use standard pre-commit config by @dstansby in https://github.com/brainglobe/brainreg/pull/108
  • Move to a src based package layout by @dstansby in https://github.com/brainglobe/brainreg/pull/109
  • Clean up package dependencies by @dstansby in https://github.com/brainglobe/brainreg/pull/111
  • Filter warnings in pytest by @dstansby in https://github.com/brainglobe/brainreg/pull/113
  • Use pyproject.toml by @dstansby in https://github.com/brainglobe/brainreg/pull/112
  • Turn off codecov commenting by @dstansby in https://github.com/brainglobe/brainreg/pull/115
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/121
  • Update readme links by @adamltyson in https://github.com/brainglobe/brainreg/pull/119
  • Update dependency (imlib > brainglobe-utils) by @adamltyson in https://github.com/brainglobe/brainreg/pull/122
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/124
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/125
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/126
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/127
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/129
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/130
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainreg/pull/131

New Contributors

  • @pre-commit-ci made their first contribution in https://github.com/brainglobe/brainreg/pull/121

Full Changelog: https://github.com/brainglobe/brainreg/compare/0.4.0...v0.5.0

- Python
Published by willGraham01 over 2 years ago

brainreg - Version 0.1.5

- Python
Published by adamltyson over 5 years ago