brainglobe

(Meta-)package repository for BrainGlobe's Python tools for computational neuroanatomy.

https://github.com/brainglobe/brainglobe-meta

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
Found CITATION.cff file
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codemeta.json file
Found codemeta.json file
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.zenodo.json file
Found .zenodo.json file
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DOI references
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Academic publication links
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (14.5%) to scientific vocabulary

Last synced: 6 months ago · JSON representation ·

Repository

(Meta-)package repository for BrainGlobe's Python tools for computational neuroanatomy.

Basic Info

Host: GitHub
Owner: brainglobe
License: bsd-3-clause
Language: Python
Default Branch: main
Size: 147 KB

Statistics

Stars: 10
Watchers: 2
Forks: 1
Open Issues: 6
Releases: 11

Created over 2 years ago · Last pushed 6 months ago

Metadata Files

Readme Contributing License Citation

BrainGlobe

This package provides all BrainGlobe tools in one place, installable in a single command. Installing this package will provide you with the complete suite of BrainGlobe tools, without needing to worry about dependency resolution. A complete list of the tools provided by this package is provided on our website, and you can also read more about these tools there too.

If you are interested in running some of our analysis workflows, you might want to head over to brainglobe-workflows and install the analysis pipelines offered by that package too.

Installing and Updating

See the installation instructions over on the BrainGlobe website for full information. But the TLDR is;

bash pip install brainglobe

and to update,

bash pip install brainglobe --update

Seeking help or contributing

We are always happy to help users of our tools, and welcome any contributions. If you would like to get in contact with us for any reason, please see the contact page of our website.

The Brainglobe Initiative

The BrainGlobe Initiative exists to facilitate the development of interoperable Python-based tools for computational neuroanatomy.

We have three aims:

Develop specialist software for specific analysis and visualisation needs, such as cellfinder and brainrender.
Develop core tools to facilitate others to build interoperable tools in Python, e.g. the BrainGlobe Atlas API.
Build a community of neuroscientists and developers to share knowledge, build software and engage with the scientific, and open-source community (e.g. by organising hackathons).

Funding Information

The BrainGlobe project is only possible due to grant funding and the generous support of host institutions, whose information can be found on this website.

Owner

Name: BrainGlobe
Login: brainglobe
Kind: organization
Location: London/Munich

Website: https://brainglobe.info/
Twitter: brain_globe
Repositories: 28
Profile: https://github.com/brainglobe

Open python tools for morphological analyses in systems neuroscience

Citation (CITATION.cff)

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: BrainGlobe
message: >-
  You can use the brainglobe.cite() function to generate
  citations for the BrainGlobe tools you use in your
  research.
type: software
authors:
  - given-names: BrainGlobe
    family-names: Developers
    affiliation: 'Sainsbury Wellcome Centre, University College London'
    email: hello@brainglobe.info
  - given-names: Wiliam Michael
    family-names: Graham
    email: william.graham@ucl.ac.uk
    affiliation: 'Advanced Research Computing, University College London'
    orcid: 'https://orcid.org/0000-0003-0058-263X'
repository-code: 'https://github.com/brainglobe/brainglobe-meta'
url: 'https://brainglobe.info/'
abstract: >-
  The BrainGlobe Initiative exists to facilitate the
  development of interoperable Python-based tools for
  computational neuroanatomy.
license: BSD-3-Clause
citation-sentence: >-
  'This project makes use of the BrainGlobe tool-suite, https://brainglobe.info/'
year: 2024

GitHub Events

Total

Delete event: 15
Issue comment event: 15
Push event: 16
Pull request review event: 14
Pull request event: 30
Fork event: 1
Create event: 14

Last Year

Delete event: 15
Issue comment event: 15
Push event: 16
Pull request review event: 14
Pull request event: 30
Fork event: 1
Create event: 14

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 0
Total pull requests: 16
Average time to close issues: N/A
Average time to close pull requests: about 7 hours
Total issue authors: 0
Total pull request authors: 5
Average comments per issue: 0
Average comments per pull request: 0.75
Merged pull requests: 13
Bot issues: 0
Bot pull requests: 8

Past Year

Issues: 0
Pull requests: 16
Average time to close issues: N/A
Average time to close pull requests: about 7 hours
Issue authors: 0
Pull request authors: 5
Average comments per issue: 0
Average comments per pull request: 0.75
Merged pull requests: 13
Bot issues: 0
Bot pull requests: 8

View more stats

Top Authors

Issue Authors

adamltyson (3)
alessandrofelder (2)
dstansby (1)
willGraham01 (1)
pre-commit-ci[bot] (1)

Pull Request Authors

pre-commit-ci[bot] (18)
willGraham01 (7)
adamltyson (6)
alessandrofelder (5)
IgorTatarnikov (4)
K-Meech (2)
lochhh (1)

Top Labels

Issue Labels

enhancement (5)

Pull Request Labels

Packages

Total packages: 1
Total downloads:
- pypi 410 last-month

Total dependent packages: 1
Total dependent repositories: 0
Total versions: 15
Total maintainers: 5

pypi.org: brainglobe

Python-based tools for computational neuroanatomy.

Documentation: https://brainglobe.readthedocs.io/
License: BSD-3-Clause
Latest release: 1.3.1
published over 1 year ago

Versions: 15
Dependent Packages: 1
Dependent Repositories: 0
Downloads: 410 Last month

Rankings

Dependent packages count: 10.0%

Downloads: 27.9%

Average: 35.1%

Dependent repos count: 67.5%

Maintainers (5)

adamltyson vigji fede123 willGraham01 alessandrofelder