brainglobe - v1.3.1

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainglobe-meta/pull/61
• update minimum cellfinder and segmentation by @alessandrofelder in https://github.com/brainglobe/brainglobe-meta/pull/62

Full Changelog: https://github.com/brainglobe/brainglobe-meta/compare/v1.3.0...v1.3.1

- Python
Published by alessandrofelder over 1 year ago

brainglobe - v1.3.0

What's Changed

First release of the metapackage with the new brainmapper napari widget.

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainglobe-meta/pull/57
• Standardise contact information in readme by @adamltyson in https://github.com/brainglobe/brainglobe-meta/pull/58
• Update pinned dependencies and add brainglobe-napari by @adamltyson in https://github.com/brainglobe/brainglobe-meta/pull/60

Full Changelog: https://github.com/brainglobe/brainglobe-meta/compare/v1.2.0...v1.3.0

- Python
Published by adamltyson over 1 year ago

brainglobe - v1.2.0

What's Changed

First release of the meta-package to support pytorch as the default classification backend.

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainglobe-meta/pull/55
• Update dependencies & supported Python versions by @adamltyson in https://github.com/brainglobe/brainglobe-meta/pull/56

Full Changelog: https://github.com/brainglobe/brainglobe-meta/compare/v1.1.0...v1.2.0

- Python
Published by alessandrofelder over 1 year ago

brainglobe - v1.1.0

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainglobe-meta/pull/50
• add codecov token by @K-Meech in https://github.com/brainglobe/brainglobe-meta/pull/51
• run CI on both types of Mac by @alessandrofelder in https://github.com/brainglobe/brainglobe-meta/pull/52
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainglobe-meta/pull/53
• pin dependencies to latest releases by @alessandrofelder in https://github.com/brainglobe/brainglobe-meta/pull/54

New Contributors

• @alessandrofelder made their first contribution in https://github.com/brainglobe/brainglobe-meta/pull/52

Full Changelog: https://github.com/brainglobe/brainglobe-meta/compare/v1.0.4...v1.1.0

- Python
Published by alessandrofelder almost 2 years ago

brainglobe - v1.0.4

Refactor LoadFileException from brainreg into brainglobe-utils

LoadFileException from brainreg has been combined with ImageIOLoadException from brainglobe_utils.image_io. This release updates the versions of both brainreg and brainglobe-utils to ensure they remain compatible with each other.

What's Changed

• Update brainglobe-utils and brainreg versions by @K-Meech in https://github.com/brainglobe/brainglobe-meta/pull/49

New Contributors

• @K-Meech made their first contribution in https://github.com/brainglobe/brainglobe-meta/pull/49

Full Changelog: https://github.com/brainglobe/brainglobe-meta/compare/v1.0.3...v1.0.4

- Python
Published by K-Meech almost 2 years ago

brainglobe - v1.0.3

brainglobe-atlasapi release

bg-atlasapi has been renamed to brainglobe-atlasapi to keep it in line with the naming convention for BrainGlobe tools. This update ensures that all installed BrainGlobe tools point to the new package, and removes the old bg-atlasapi package. See the blog post for more information.

Also in this update: - cellfinder version is bumped to 1.1.1, fixing a bug that could cause hanging and silent crashes when working with large numbers (>2**16 - 1) cell candidates.

What's Changed

• brainglobe-atlasapi rename update by @willGraham01 in https://github.com/brainglobe/brainglobe-meta/pull/48

Full Changelog: https://github.com/brainglobe/brainglobe-meta/compare/v1.0.2...v1.0.3

- Python
Published by willGraham01 about 2 years ago

brainglobe - v1.0.2

imio retirement

imio hqw now been absorbed into brainglobe-utils. This release provides a stable release of all BrainGlobe tools with this dependency change resolved. See the blog post for more information.

What's Changed

• brainglobe-space update by @willGraham01 in https://github.com/brainglobe/brainglobe-meta/pull/42
• Add CITATION file by @willGraham01 in https://github.com/brainglobe/brainglobe-meta/pull/44
• Update testanddeploy.yml by @IgorTatarnikov in https://github.com/brainglobe/brainglobe-meta/pull/45
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/brainglobe/brainglobe-meta/pull/46
• Update brainglobe-utils dependency and remove imio by @willGraham01 in https://github.com/brainglobe/brainglobe-meta/pull/47

New Contributors

• @IgorTatarnikov made their first contribution in https://github.com/brainglobe/brainglobe-meta/pull/45

Full Changelog: https://github.com/brainglobe/brainglobe-meta/compare/v1.0.0...v1.0.2

- Python
Published by willGraham01 about 2 years ago

brainglobe - v1.0.0

BrainGlobe Version 1 is here!

Our blog post has all the details, as there's a lot to encapsulate here!

But the TL;DR...

All BrainGlobe tools, all in one place, all in one install.

pip install brainglobe into a clean envrionment running Python 3.9 or 3.10.

• No more need for individual tool installation
• Assured consistency and inter-operability between all provided tools
• For future updates to tools, use pip install brainglobe --update :partying_face:

What's Changed

• [Feature] Version 1 release! :partying_face: by @willGraham01 in https://github.com/brainglobe/brainglobe-meta/pull/38

Full Changelog: https://github.com/brainglobe/brainglobe-meta/compare/v0.4.0...v1.0.0

- Python
Published by willGraham01 about 2 years ago

brainglobe - v0.4.0

Update shipped packages

This is a stepping stone towards the full BrainGlobe version 1 release, adding some additional packages that are not part of the internal restructuring but are nonetheless ready for release.

• Now shipping brainrender
• Now shipping brainrender-napari
• No longer shipping morphapi

See #37 for full details and links to the corresponding tools.

What's Changed

• Update packages that are shipped by @willGraham01 in https://github.com/brainglobe/brainglobe-meta/pull/37

Full Changelog: https://github.com/brainglobe/brainglobe-meta/compare/v0.3.1...v0.4.0

- Python
Published by willGraham01 about 2 years ago

brainglobe - v0.3.1

Metadata update

Small update to point users to the BrainGlobe website if they're looking for documentation, or the source code if they explicitly want that when viewing the package on PyPI.

What's Changed

• Update pyproject.toml by @adamltyson in https://github.com/brainglobe/brainglobe-meta/pull/33

Full Changelog: https://github.com/brainglobe/brainglobe-meta/compare/v0.3.0...v0.3.1

- Python
Published by willGraham01 about 2 years ago

brainglobe - Update to ship `brainglobe-segmentation`

Update shipped BrainGlobe tools

With the release of brainreg and brainglobe-segmentation, we are now pinning these at minimum version v1.0.0 to ensure users install the up-to-date versions of these tools.

What's Changed

• Set pre-commit autoupdate frequency to monthly by @adamltyson in https://github.com/brainglobe/brainglobe-meta/pull/27
• Update to brainreg 1.0.0, and brainreg-segment -> brainglobe-segmentation. by @willGraham01 in https://github.com/brainglobe/brainglobe-meta/pull/32

New Contributors

• @adamltyson made their first contribution in https://github.com/brainglobe/brainglobe-meta/pull/27

Full Changelog: https://github.com/brainglobe/brainglobe-meta/compare/v0.2.0...v0.3.0

- Python
Published by willGraham01 over 2 years ago