repro-workshop
Science Score: 54.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
-
✓Committers with academic emails
1 of 5 committers (20.0%) from academic institutions -
○Institutional organization owner
-
○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.6%) to scientific vocabulary
Keywords
r
reproducible-research
Keywords from Contributors
structural-equation-modeling
Last synced: 7 months ago
·
JSON representation
·
Repository
Basic Info
- Host: GitHub
- Owner: aaronpeikert
- License: cc0-1.0
- Language: R
- Default Branch: main
- Homepage: https://aaronpeikert.github.io/repro-workshop/self-paced/
- Size: 9.88 MB
Statistics
- Stars: 21
- Watchers: 1
- Forks: 28
- Open Issues: 12
- Releases: 3
Topics
r
reproducible-research
Created over 5 years ago
· Last pushed 10 months ago
Metadata Files
Readme
License
Citation
README.Rmd
---
output: github_document
---
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>"
)
```
```{r child="snippets/abstract-talk.Rmd"}
```
```{r child="snippets/abstract-workshop.Rmd"}
```
## Getting Started
Hi there, great that you made it!
It is useful to keep the [slides open alongside](https://aaronpeikert.github.io/repro-workshop/presentation.html#1) (who likes typing links?).
Lets get started by creating an account on Github and RStudio Cloud (login below, if you already have one).
```{r child="snippets/signup.Rmd"}
```
```{r child="snippets/signin.Rmd"}
```
## RStudio Cloud
Now that you have acces to RStudio Cloud, open the project:
https://rstudio.cloud/content/4366949
Owner
- Name: Aaron Peikert
- Login: aaronpeikert
- Kind: user
- Repositories: 15
- Profile: https://github.com/aaronpeikert
Citation (CITATION.cff)
# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: >-
Reproducible Research in R: A Workshop on How to Do the
Same Thing More Than Once
message: >-
If you find the workshop materials useful you may use them
under CC0 license, but please cite us.
type: software
authors:
- given-names: Aaron
family-names: Peikert
email: peikert@mpib-berlin.mpg.de
name-particle: Aaron
affiliation: Max Planck Institute for Human Development
orcid: 'https://orcid.org/0000-0001-7813-818X'
- given-names: Hannes
family-names: Diemerling
repository-code: 'https://github.com/aaronpeikert/repro-workshop'
url: 'https://aaronpeikert.github.io/repro-workshop/self-paced/'
abstract: >
Computational reproducibility represents a key challenge
for making one's own work accessible and easily
understandable for others—but achieving this goal is not
easy.
Often, researchers must invest considerable efforts to
find out what the end goal of such a reproducible workflow
can look like and how they can acquire the skills to get
there.
This workshop gives an overview of how to create
reproducible data analyses in R (and beyond).
Specifically, this workshop will showcase one way to
automate the entire process from raw data to publishable
manuscripts in a pre-set online environment.
This automation combines dynamic document generation (via
R Markdown), version control (via Git), workflow
orchestration (via Make) and software management (via
Docker).
All these tools and, therefore, the entire automatic
reproduction of results are available on any machine with
Docker installed.
The resulting workflow is hence ensured to reproduce over
time, locally and in the cloud.
keywords:
- r
- reproducible research
license: CC0-1.0
doi: 10.5281/zenodo.8069391
GitHub Events
Total
- Create event: 13
- Release event: 1
- Issues event: 7
- Watch event: 5
- Delete event: 3
- Push event: 58
- Pull request event: 20
- Fork event: 4
Last Year
- Create event: 13
- Release event: 1
- Issues event: 7
- Watch event: 5
- Delete event: 3
- Push event: 58
- Pull request event: 20
- Fork event: 4
Committers
Last synced: over 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Aaron Peikert | a****t@p****e | 208 |
| Hannes Diemerling | h****g@g****m | 38 |
| Elisa Buchberger | 7****r | 2 |
| Anna Lohmann | a****a@l****t | 1 |
| Andreas Brandmaier | b****r@m****e | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: over 1 year ago
All Time
- Total issues: 30
- Total pull requests: 18
- Average time to close issues: about 2 months
- Average time to close pull requests: 4 months
- Total issue authors: 7
- Total pull request authors: 5
- Average comments per issue: 0.13
- Average comments per pull request: 0.11
- Merged pull requests: 11
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: about 2 months
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- aaronpeikert (27)
- HannesDiemerling (2)
- Maximilian-Stefan-Ernst (2)
- MalikaIhle (1)
- lkosanke (1)
- amazona279 (1)
- schumaki (1)
Pull Request Authors
- aaronpeikert (19)
- HannesDiemerling (4)
- brandmaier (2)
- Maximilian-Stefan-Ernst (2)
- Maren186 (2)
- annloh (1)
- cjvanlissa (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
.github/workflows/publish.yml
actions
- JamesIves/github-pages-deploy-action v4 composite
- actions/checkout v3 composite
.github/workflows/push-container.yml
actions
- actions/checkout v3 composite
- docker/build-push-action ad44023a93711e3deb337508980b4b5e9bcdc5dc composite
- docker/login-action f054a8b539a109f9f41c372932f1ae047eff08c9 composite
- docker/metadata-action 98669ae865ea3cffbcbaa878cf57c20bbf1c6c38 composite
Dockerfile
docker
- rocker/verse 4.2.1 build