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verticox

https://github.com/carrier-project/verticox

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 8 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
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    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.8%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Basic Info
Statistics
  • Stars: 2
  • Watchers: 2
  • Forks: 0
  • Open Issues: 25
  • Releases: 20
Created almost 4 years ago · Last pushed 7 months ago
Metadata Files
Readme Citation Security

README.md

Build and Publish DOI Paper DOI

Documentation

Authors:

verticox+

This repository contains the components for running vertical cox proportional hazards analysis in a setting where the data is vertically partitioned.

Our solution Verticox+[1] is based on the Verticox algorithm by Dai et al. [2]. It has been adapted to be used within the Vantage6 framework.

This solution is extended with the scalar vector product protocol to remove the requirement that outcome data needs to be available at all parties.

References

  • [1] van Daalen, F., Smits, D., Ippel, L. et al. Verticox+: vertically distributed Cox proportional hazards model with improved privacy guarantees. Complex Intell. Syst. 11, 388 (2025), https://doi.org/10.1007/s40747-025-02022-4
  • [2] W. Dai, X. Jiang, L. Bonomi, Y. Li, H. Xiong and L. Ohno-Machado, "VERTICOX: Vertically Distributed Cox Proportional Hazards Model Using the Alternating Direction Method of Multipliers," in IEEE Transactions on Knowledge and Data Engineering, vol. 34, no. 2, pp. 996-1010, 1 Feb. 2022, doi: https://10.1109/TKDE.2020.2989301.

Owner

  • Name: CARRIER
  • Login: CARRIER-project
  • Kind: organization
  • Location: Netherlands

Citation (CITATION.CFF) 

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: Verticox+
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - given-names: Djura
    family-names: Smits
    email: d.smits@esciencecenter.nl
    affiliation: Netherlands eScience Center
    orcid: 'https://orcid.org/0000-0003-4096-0260'
  - given-names: Florian
    family-names: van Daalen
    email: f.vandaalen@maastrichtuniversity.nl
    affiliation: Maastricht University
    orcid: 'https://orcid.org/0000-0002-2229-8587'
identifiers:
  - type: doi
    value: 10.5281/zenodo.13933625
    description: Doi for all versions of the software
repository-code: 'https://github.com/CARRIER-project/verticox/'
abstract: >-
  An implementation of cox proportional hazards for
  vertically partioned data.
keywords:
  - federated learning
  - survival analysis
  - secure multiparty computation
license: Apache-2.0

GitHub Events

Total
  • Create event: 38
  • Release event: 7
  • Issues event: 32
  • Watch event: 1
  • Delete event: 34
  • Issue comment event: 5
  • Push event: 101
  • Pull request review event: 4
  • Pull request review comment event: 4
  • Pull request event: 58
Last Year
  • Create event: 38
  • Release event: 7
  • Issues event: 32
  • Watch event: 1
  • Delete event: 34
  • Issue comment event: 5
  • Push event: 101
  • Pull request review event: 4
  • Pull request review comment event: 4
  • Pull request event: 58

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 15
  • Total pull requests: 27
  • Average time to close issues: 2 months
  • Average time to close pull requests: 8 days
  • Total issue authors: 1
  • Total pull request authors: 1
  • Average comments per issue: 0.07
  • Average comments per pull request: 0.07
  • Merged pull requests: 22
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 14
  • Pull requests: 26
  • Average time to close issues: 19 days
  • Average time to close pull requests: about 21 hours
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.08
  • Merged pull requests: 21
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • dsmits (26)
Pull Request Authors
  • dsmits (34)
Top Labels
Issue Labels
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Dependencies

.github/workflows/build_java.yml actions
  • actions/checkout v3 composite
  • actions/setup-java v3 composite
  • actions/upload-artifact v3 composite
.github/workflows/integration_test.yml actions
  • actions/checkout v3 composite
  • actions/download-artifact v3 composite
  • docker/setup-buildx-action v2 composite
.github/workflows/push.yml actions
  • actions/checkout v3 composite
  • actions/download-artifact v3 composite
  • docker/build-push-action v4 composite
  • docker/login-action v1 composite
  • docker/setup-buildx-action v2 composite
.github/workflows/release.yml actions
  • actions/checkout v3 composite
  • actions/download-artifact v3 composite
  • actions/setup-python v3 composite
  • docker/build-push-action v4 composite
  • docker/login-action v1 composite
  • docker/setup-buildx-action v2 composite
  • mtkennerly/dunamai-action v1.1.0 composite
.github/workflows/tests.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v3 composite
Dockerfile docker
  • eclipse-temurin 17.0.7_7-jdk build
mock/docker-compose.yml docker
  • openjdk latest
java/verticox/pom.xml maven
  • com.florian:n-scalar-product-protocol 3.0-STABLE
  • org.springframework.boot:spring-boot 3.0.2
  • org.springframework.boot:spring-boot-autoconfigure 3.0.2
  • org.springframework:spring-beans 6.0.4
  • org.springframework:spring-core 6.0.7
  • org.springframework:spring-web 6.0.4
  • org.junit.jupiter:junit-jupiter-api 5.7.1 test
python/poetry.lock pypi
  • 217 dependencies
python/pyproject.toml pypi
  • Jinja2 ^3.1.2 develop
  • black ^23.7.0 develop
  • docker 6.1.2 develop
  • flake8 ^4.0.1 develop
  • grpcio-tools ^1.46.3 develop
  • jupyter ^1.0.0 develop
  • jupyterlab ^3.4.4 develop
  • matplotlib ^3.5.1 develop
  • pre-commit ^3.3.3 develop
  • pytest ^7.1.2 develop
  • python-on-whales ^0.65.0 develop
  • seaborn ^0.11.2 develop
  • vantage6 4.2.2 develop
  • Flask ^2.1.2
  • Flask-RESTful ^0.3.9
  • clize ^5.0.1
  • fastparquet ^2023.7.0
  • grpcio ^1.46.3
  • numba ^0.56.0
  • numpy ^1.22.2
  • pandas ^1.4.1
  • protobuf 3.20.1
  • pyarrow ^12.0.1
  • python ^3.10.0
  • scikit-learn ^1.0.2
  • scikit-survival ^0.17.0
  • sphinx-autoapi ^3.0.0
  • vantage6-algorithm-tools ^4.2.2
  • vantage6-client 4.2.2