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TDAvec: Computing Vector Summaries of Persistence Diagrams for Topological Data Analysis in R and Python

TDAvec: Computing Vector Summaries of Persistence Diagrams for Topological Data Analysis in R and Python - Published in JOSS (2025)

https://github.com/uislambekov/tdavec

Science Score: 95.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 1 DOI reference(s) in JOSS metadata
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 6 committers (16.7%) from academic institutions
  • ○
    Institutional organization owner
  • ✓
    JOSS paper metadata
    Published in Journal of Open Source Software
Last synced: 4 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: uislambekov
  • License: mit
  • Language: Jupyter Notebook
  • Default Branch: main
  • Size: 5.84 MB
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 3
  • Open Issues: 2
  • Releases: 0
Created over 1 year ago · Last pushed 5 months ago
Metadata Files
Readme Contributing License Code of conduct

README.md

TDAvec

TDAvec is an R package for computing vector summaries of persistence diagrams, which are commonly used in Topological Data Analysis (TDA). The package provides efficient implementations of various vector summary statistics, leveraging C++ code for improved computational performance through the Rcpp package.

Installation

You can install TDAvec from CRAN or directly from GitHub.

From CRAN

To install the latest version from CRAN, use:

r install.packages("TDAvec")

From GitHub

```r

install from GitHub

devtools::install_github("uislambekov/TDAvec")

install from GitHub with vignettes/tutorials

devtools::installgithub("uislambekov/TDAvec", buildvignettes = TRUE) ```

Vignette

TDAvec includes a vignette that provides examples to demonstrate its basic usage.

Support and Contributions

If you have questions, find bugs, or want to suggest features, please visit the GitHub Issues page to report them or start a discussion.

JOSS Publication

TDAvec: Computing Vector Summaries of Persistence Diagrams for Topological Data Analysis in R and Python
Published
October 18, 2025
DOI
Volume 10, Issue 114, Page 8532
Authors
Umar Islambekov ORCID
Bowling Green State University, USA
Aleksei Luchinsky
Bowling Green State University, USA
Editor
Ujjwal Karn ORCID
Tags
Persistent Homology Topological Data Analysis Persistence Diagram Vectorization of Persistence Diagrams
View PDF Review Thread Software Archive

GitHub Events

Total
  • Issues event: 18
  • Member event: 1
  • Issue comment event: 29
  • Push event: 51
  • Pull request event: 7
  • Fork event: 3
Last Year
  • Issues event: 18
  • Member event: 1
  • Issue comment event: 29
  • Push event: 51
  • Pull request event: 7
  • Fork event: 3

Committers

Last synced: 5 months ago

All Time
  • Total Commits: 90
  • Total Committers: 6
  • Avg Commits per committer: 15.0
  • Development Distribution Score (DDS): 0.433
Past Year
  • Commits: 79
  • Committers: 6
  • Avg Commits per committer: 13.167
  • Development Distribution Score (DDS): 0.481
Top Committers
Name Email Commits
uislambekov u****v@g****m 51
Aleksei Luchinsky a****i@b****u 26
uislambekov 7****v@u****m 7
ALuchinsky 1****y@u****m 4
Naman Taggar 9****1@u****m 1
Shravan Goswami s****i@g****m 1
Committer Domains (Top 20 + Academic)
bgsu.edu: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 8
  • Total pull requests: 4
  • Average time to close issues: 28 days
  • Average time to close pull requests: about 9 hours
  • Total issue authors: 2
  • Total pull request authors: 2
  • Average comments per issue: 1.5
  • Average comments per pull request: 0.0
  • Merged pull requests: 4
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 8
  • Pull requests: 4
  • Average time to close issues: 28 days
  • Average time to close pull requests: about 9 hours
  • Issue authors: 2
  • Pull request authors: 2
  • Average comments per issue: 1.5
  • Average comments per pull request: 0.0
  • Merged pull requests: 4
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • corybrunson (6)
  • adityapt (4)
Pull Request Authors
  • ALuchinsky (3)
  • zplus11 (1)
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • cran 218 last-month
  • Total docker downloads: 48
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 6
  • Total maintainers: 1
cran.r-project.org: TDAvec

Vector Summaries of Persistence Diagrams

  • Versions: 6
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 218 Last month
  • Docker Downloads: 48
Rankings
Dependent packages count: 29.8%
Dependent repos count: 35.5%
Average: 47.0%
Downloads: 75.8%
Maintainers (1)
aluchi@bgsu.edu
Last synced: 5 months ago