h5bench

A benchmark suite for measuring HDF5 performance.

https://github.com/hpc-io/h5bench

Science Score: 54.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
    Found CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
  • Committers with academic emails
    9 of 22 committers (40.9%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (11.8%) to scientific vocabulary

Keywords

benchmark hdf5 hpc

Keywords from Contributors

adaptive-mesh-refinement amr amrex hpsf
Last synced: 6 months ago · JSON representation ·

Repository

A benchmark suite for measuring HDF5 performance.

Basic Info
Statistics
  • Stars: 42
  • Watchers: 6
  • Forks: 30
  • Open Issues: 18
  • Releases: 7
Topics
benchmark hdf5 hpc
Created over 5 years ago · Last pushed 6 months ago
Metadata Files
Readme License Citation

README.md

h5bench

h5bench: a Parallel I/O Benchmark Suite for HDF5

GitHub release (latest by date) Spack GitHub branch checks state Read the Docs

H5bench is a suite of parallel I/O benchmarks or kernels representing I/O patterns that are commonly used in HDF5 applications on high performance computing systems. H5bench measures I/O performance from various aspects, including the I/O overhead, observed I/O rate, etc.

You can access the full documentation and examples at h5bench.readthedocs.io

If you use this benchmark in your experiments, please consider citing:

@inproceedings{h5bench, title = {{h5bench: HDF5 I/O Kernel Suite for Exercising HPC I/O Patterns}}, author = {Li, Tonglin and Byna, Suren and Koziol, Quincey and Tang, Houjun and Bez, Jean Luca and Kang, Qiao}, booktitle = {Proceedings of Cray User Group Meeting, CUG 2021} year = {2021} }


H5bench: a benchmark suite for parallel HDF5 (H5bench) Copyright (c) 2021, The Regents of the University of California, through Lawrence Berkeley National Laboratory (subject to receipt of any required approvals from the U.S. Dept. of Energy) and North Carolina State University.

All rights reserved. If you have questions about your rights to use or distribute this software, please contact Berkeley Lab's Intellectual Property Office at IPO@lbl.gov.

NOTICE. This Software was developed under funding from the U.S. Department of Energy and the U.S. Government consequently retains certain rights. As such, the U.S. Government has been granted for itself and others acting on its behalf a paid-up, nonexclusive, irrevocable, worldwide license in the Software to reproduce, distribute copies to the public, prepare derivative works, and perform publicly and display publicly, and to permit others to do so.

Owner

  • Name: hpc-io
  • Login: hpc-io
  • Kind: organization

Citation (CITATION.cff)

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: h5bench
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - given-names: Suren
    family-names: Byna
    email: sbyna@lbl.gov
    affiliation: Lawrence Berkeley National Laboratory
    orcid: 'https://orcid.org/0000-0003-3048-3448'
  - given-names: Jean Luca
    family-names: Bez
    email: jlbez@lbl.gov
    affiliation: Lawrence Berkeley National Laboratory
    orcid: 'https://orcid.org/0000-0002-3915-1135'
  - given-names: Tonglin
    family-names: Li
    affiliation: Lawrence Berkeley National Laboratory
  - given-names: Quincey
    family-names: Koziol
    affiliation: National Energy Research Scientific Computing Center
  - given-names: Houjun
    family-names: Tang
    email: htang4@lbl.gov
    affiliation: Lawrence Berkeley National Laboratory
    orcid: 'https://orcid.org/0000-0001-7038-8360'
  - given-names: Qiao
    family-names: Kang
    affiliation: Lawrence Berkeley National Laboratory
identifiers:
  - type: url
    value: >-
      https://sdm.lbl.gov/~sbyna/research/papers/2021/202106-CUG_2021_h5bench.pdf
    description: CUG Paper
  - type: url
    value: 'https://github.com/hpc-io/h5bench'
    description: Github Repository
  - type: url
    value: 'https://h5bench.readthedocs.io'
    description: h5bench Documentation
repository-code: 'https://github.com/hpc-io/h5bench'
abstract: >-
  h5bench is a suite of parallel I/O benchmarks or kernels
  representing I/O patterns that are commonly used in HDF5
  applications on high performance computing systems.
  h5bench measures I/O performance from various aspects,
  including the I/O overhead, observed I/O rate, etc. 
keywords:
  - HDF5
  - I/O
  - HPC
  - I/O benchmark
  - I/O kernel
commit: ' 67a3e6d91508e5ab77db79c6187b2eb3c96119e0'
version: v.1.4
date-released: '2023-05-31'

GitHub Events

Total
  • Create event: 4
  • Release event: 1
  • Issues event: 2
  • Watch event: 6
  • Issue comment event: 5
  • Push event: 21
  • Pull request review event: 3
  • Pull request event: 7
Last Year
  • Create event: 4
  • Release event: 1
  • Issues event: 2
  • Watch event: 6
  • Issue comment event: 5
  • Push event: 21
  • Pull request review event: 3
  • Pull request event: 7

Committers

Last synced: about 2 years ago

All Time
  • Total Commits: 803
  • Total Committers: 22
  • Avg Commits per committer: 36.5
  • Development Distribution Score (DDS): 0.396
Past Year
  • Commits: 87
  • Committers: 7
  • Avg Commits per committer: 12.429
  • Development Distribution Score (DDS): 0.103
Top Committers
Name Email Commits
Jean Luca Bez j****z@l****v 485
Tonglin Li t****i@l****v 108
Kenneth Casimiro k****o@g****m 105
github-actions g****] 27
Jean Luca Bez j****z@g****m 13
Suren Byna s****a@l****v 13
Scot Breitenfeld b****d@h****g 11
Tony Li l****y@g****m 8
RunzhouHan r****n@b****u 7
John Ravi j****i@n****u 4
Houjun Tang h****g@g****m 4
Runzhou Han h****z@i****u 3
kaushik velusamy k****y@g****m 2
Suren Byna s****a@d****v 2
NERSC n****c@h****m 2
RunzhouHan 3****n 2
aniket-modi 4****i 2
hammad45 h****5@g****m 1
kaushik velusamy k****k@l****m 1
Houjun Tang h****4@l****v 1
wkliao w****o 1
Quincey Koziol k****l@l****v 1
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 34
  • Total pull requests: 85
  • Average time to close issues: about 1 month
  • Average time to close pull requests: 26 days
  • Total issue authors: 13
  • Total pull request authors: 12
  • Average comments per issue: 1.03
  • Average comments per pull request: 0.51
  • Merged pull requests: 77
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 18
  • Pull requests: 24
  • Average time to close issues: 23 days
  • Average time to close pull requests: 14 days
  • Issue authors: 6
  • Pull request authors: 4
  • Average comments per issue: 0.72
  • Average comments per pull request: 0.25
  • Merged pull requests: 21
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • jeanbez (20)
  • christophermaynard (3)
  • skyFzz (2)
  • yzanhua (2)
  • jjravi (1)
  • kaushikvelusamy (1)
  • wkliao (1)
  • Goon83 (1)
  • houjun (1)
  • mikekatana (1)
  • zhanghb55 (1)
  • michaelkuhn (1)
  • KokoFan16 (1)
  • candiceT233 (1)
  • RunzhouHan (1)
Pull Request Authors
  • jeanbez (65)
  • houjun (4)
  • brtnfld (3)
  • kaushikvelusamy (3)
  • kencasimiro (2)
  • RunzhouHan (2)
  • jprorama (2)
  • aniket-modi (2)
  • sbyna (1)
  • pkcoff (1)
  • hyoklee (1)
  • jjravi (1)
  • arcturus5340 (1)
  • skyFzz (1)
  • zhenghh04 (1)
Top Labels
Issue Labels
bug (26) enhancement (7) documentation (5) question (2) tests (1) spack (1) wontfix (1)
Pull Request Labels
enhancement (42) bug (27) documentation (19) tests (4) new benchmark (2) CI (2) HDF5 VOL (1) backlog (1)

Packages

  • Total packages: 1
  • Total downloads: unknown
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 4
  • Total maintainers: 2
spack.io: h5bench

A benchmark suite for measuring HDF5 performance.

  • Versions: 4
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent repos count: 0.0%
Forks count: 22.4%
Stargazers count: 24.6%
Average: 26.1%
Dependent packages count: 57.3%
Maintainers (2)
Last synced: 6 months ago

Dependencies

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.github/workflows/lint.yml actions
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docker/ubuntu-18.04-hdf5-1.10.4/Dockerfile docker
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docker/ubuntu-20.04-hdf5-1.14.0/Dockerfile docker
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docs/requirements.txt pypi
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