cgt
Circular genome tools is a sage package for working with circular genomes represented by signed or unsigned permutations.
Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (9.3%) to scientific vocabulary
Keywords
Repository
Circular genome tools is a sage package for working with circular genomes represented by signed or unsigned permutations.
Basic Info
- Host: GitHub
- Owner: js51
- License: gpl-3.0
- Language: Python
- Default Branch: main
- Homepage: https://cgt.joshuastevenson.me
- Size: 7.3 MB
Statistics
- Stars: 1
- Watchers: 0
- Forks: 0
- Open Issues: 6
- Releases: 15
Topics
Metadata Files
README.md
Circular genome tools (cgt)
A sage package for working with circular genomes represented by signed or unsigned permutations. It includes tools for converting between representations as well as visualisations using matplotlib.
To install and use this package, paste the following command in your terminal
sage -pip install cgt
and use import cgt in a sage script or environment.
If you would like to contribute to cgt, please see CONTRIBUTING.md for how to get set up.
If you use this software in your work, please cite it use the citation function on the github page or see CITATION.cff
Note: you will need to at least have Sage version 9.0 installed. If you aren't sure how to do this, see the installation instructions in INSTALL.md.
Owner
- Name: Joshua Stevenson
- Login: js51
- Kind: user
- Location: Australia
- Website: joshuastevenson.me
- Twitter: js51_
- Repositories: 4
- Profile: https://github.com/js51
Citation (CITATION.cff)
cff-version: 1.2.0 message: "If you use this software, please cite it as below." authors: - family-names: "Stevenson" given-names: "Joshua" orcid: "https://orcid.org/0000-0002-1037-9996" title: "Circular Genome Tools" version: 0.1.X date-released: 2021-08-25 url: "https://github.com/js51/Circular-genome-tools"
GitHub Events
Total
- Push event: 1
Last Year
- Push event: 1
Committers
Last synced: about 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Joshua Stevenson | j****3@G****m | 141 |
| Joshua Stevenson | j****3@g****m | 27 |
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 12
- Total pull requests: 34
- Average time to close issues: 6 months
- Average time to close pull requests: about 18 hours
- Total issue authors: 1
- Total pull request authors: 1
- Average comments per issue: 0.17
- Average comments per pull request: 0.0
- Merged pull requests: 34
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- js51 (12)
Pull Request Authors
- js51 (36)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- pypi 147 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 19
- Total maintainers: 1
pypi.org: cgt
Tools for representing genomes in sage
- Homepage: https://github.com/js51/Circular-genome-tools
- Documentation: https://cgt.readthedocs.io/
- License: MIT License
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Latest release: 0.4.3
published over 1 year ago
Rankings
Maintainers (1)
Dependencies
- actions/checkout v2 composite
- actions/setup-python v2 composite
- pypa/gh-action-pypi-publish 27b31702a0e7fc50959f5ad993c78deac1bdfc29 composite