Recent Releases of cgt
cgt - Eigenvector method for partial traces
What's Changed
- Add eigenvector method for partial traces by @js51 in https://github.com/js51/Circular-genome-tools/pull/46
- Full Changelog: https://github.com/js51/Circular-genome-tools/compare/0.3.1...0.4.0
- Python
Published by js51 about 2 years ago
cgt - Faster hyperoctahedral group representations
What's Changed
- Rewrite irreps for H_n by @js51 in https://github.com/js51/Circular-genome-tools/pull/44 Full Changelog: https://github.com/js51/Circular-genome-tools/compare/0.3.0...0.3.1
- Python
Published by js51 almost 3 years ago
cgt - Simulations
Added some basic functionality for performing simulations.
- Python
Published by js51 almost 3 years ago
cgt - Remove functools @cache
To support python versions older than 3.9. A better solution for avoiding recomputing irreps etc is incoming!
- Python
Published by js51 about 4 years ago
cgt - Minor bug fixes
What's Changed
- Bug fixes and small changes for RECOMB-CG paper submission by @js51 in https://github.com/js51/Circular-genome-tools/pull/34
- Add support for computing conjugacy classes by @js51 in https://github.com/js51/Circular-genome-tools/pull/36
- Full Changelog: https://github.com/js51/Circular-genome-tools/compare/0.1.3...0.1.7
- Python
Published by js51 about 4 years ago
cgt - Fix issue with GAP irreps, adds eigenvalue binning option + more stuff
- Python
Published by js51 almost 5 years ago
cgt - Improve MLE computation and interface
Nothing major, but makes getting likelihood functions easier!
- Python
Published by js51 almost 5 years ago
cgt - Package restructure
Removes a lot of old code! Won't be compatible with my old scripts any more. Add models and other things. Still a lot more stuff to go in.
- Python
Published by js51 almost 5 years ago
cgt - PositionParadigmFramework
Haven't deleted anything so should still be backwards compatible with old code. The major change is the new PositionParadigmFramework class which consolidates a lot of information so it doesn't need to be passed around to do simple things. Should be a lot easier to use and to test.
The long term goal is to move everything into the PositionParadigmFramework class, or make new classes with functions that accept a PositionParadigmFramework instance. Also started a Genome class which will allow a nicer syntax, printing etc for dealing with entire genomes (as cosets of permutations)
- Python
Published by js51 almost 5 years ago