neuroUp
neuroUp: Plan Sample Size for fMRI Regions of Interest research using Bayesian updating
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Repository
neuroUp: Plan Sample Size for fMRI Regions of Interest research using Bayesian updating
Basic Info
- Host: GitHub
- Owner: eduardklap
- License: other
- Language: R
- Default Branch: main
- Homepage: https://eduardklap.github.io/neuroUp/
- Size: 8.15 MB
Statistics
- Stars: 2
- Watchers: 1
- Forks: 0
- Open Issues: 1
- Releases: 1
Created almost 4 years ago
· Last pushed over 1 year ago
Metadata Files
Readme
Changelog
License
Citation
README.Rmd
---
output: github_document
---
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "100%"
)
```
# neuroUp 
[](https://CRAN.R-project.org/package=neuroUp)
[](https://doi.org/10.5281/zenodo.11526169)
[](https://github.com/eduardklap/neuroUp/actions/workflows/R-CMD-check.yaml)
[](https://app.codecov.io/gh/eduardklap/neuroUp?branch=main)
[](https://fairsoftwarechecklist.net/v0.2?f=31&a=32113&i=32220&r=133)
## Overview
The goal of neuroUp is to perform empirical sample size determination and Bayesian updating for region of interest based task-related fMRI studies. For a more elaborate introduction to the method, see our paper:
Klapwijk, E. T., Jongerling, J., Hoijtink, H., & Crone, E. A. (2025). Sample size estimation for task-related functional MRI studies using Bayesian updating. *Developmental Cognitive Neuroscience, 71*, 101489. https://doi.org/10.1016/j.dcn.2024.101489
## Installation
Run the following in R:
```r
install.packages("neuroUp")
```
Or you can install the latest development version of neuroUp from [GitHub](https://github.com/) with:
``` r
install.packages("devtools")
devtools::install_github("eduardklap/neuroUp")
```
Then run the following to get started:
```r
library(neuroUp)
```
## Citation
To cite package neuroUp in publications use:
Klapwijk, E., Hoijtink, H., & Jongerling, J. (2024). neuroUp: Plan sample size for fMRI regions of interest research using Bayesian updating. https://doi.org/10.5281/zenodo.11526169
Owner
- Name: Eduard Klapwijk
- Login: eduardklap
- Kind: user
- Location: Rotterdam, Netherlands
- Company: Erasmus University Rotterdam
- Website: https://erasmus-synclab.nl/
- Twitter: etklapwijk
- Repositories: 2
- Profile: https://github.com/eduardklap
Research Data Steward + Developmental cognitive neuroscience postdoc at Erasmus University, Rotterdam, Netherlands
Citation (CITATION.cff)
# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
cff-version: 1.2.0
message: 'To cite package "neuroUp" in publications use:'
type: software
license: MIT
title: 'neuroUp: Plan Sample Size for Task fMRI Research using Bayesian Updating'
version: 0.3.1
doi: 10.5281/zenodo.11526169
abstract: Calculate the precision in mean differences (raw or Cohen's D) and correlation
coefficients for different sample sizes. Uses permutations of the collected functional
magnetic resonance imaging (fMRI) region of interest data. Method described in Klapwijk,
Jongerling, Hoijtink and Crone (2024) <https://doi.org/10.31234/osf.io/cz32t>.
authors:
- family-names: Klapwijk
given-names: Eduard
email: et.klapwijk@gmail.com
orcid: https://orcid.org/0000-0002-8936-0365
- family-names: Hoijtink
given-names: Herbert
orcid: https://orcid.org/0000-0001-8509-1973
- family-names: Jongerling
given-names: Joran
orcid: https://orcid.org/0000-0001-5697-1381
preferred-citation:
type: generic
title: 'neuroUp: Plan sample size for fMRI regions of interest research using Bayesian
updating'
authors:
- family-names: Klapwijk
given-names: Eduard
email: et.klapwijk@gmail.com
orcid: https://orcid.org/0000-0002-8936-0365
- family-names: Hoijtink
given-names: Herbert
orcid: https://orcid.org/0000-0001-8509-1973
- family-names: Jongerling
given-names: Joran
orcid: https://orcid.org/0000-0001-5697-1381
year: '2024'
doi: 10.5281/zenodo.11526169
repository-code: https://github.com/eduardklap/neuroUp
url: https://eduardklap.github.io/neuroUp/
contact:
- family-names: Klapwijk
given-names: Eduard
email: et.klapwijk@gmail.com
orcid: https://orcid.org/0000-0002-8936-0365
references:
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notes: Imports
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- family-names: Vaughan
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orcid: https://orcid.org/0000-0003-4777-038X
year: '2024'
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notes: Imports
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repository: https://CRAN.R-project.org/package=ggplot2
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email: hadley@posit.co
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orcid: https://orcid.org/0000-0002-5147-4711
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- family-names: Wilke
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- family-names: Dunnington
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orcid: https://orcid.org/0000-0002-9415-4582
- family-names: Brand
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orcid: https://orcid.org/0000-0002-9335-7468
year: '2024'
doi: 10.32614/CRAN.package.ggplot2
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notes: Imports
repository: https://CRAN.R-project.org/package=psychometric
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year: '2024'
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notes: Imports
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repository: https://CRAN.R-project.org/package=bootstrap
authors:
- family-names: original
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cran.r-project.org: neuroUp
Plan Sample Size for Task fMRI Research using Bayesian Updating
- Homepage: https://eduardklap.github.io/neuroUp/
- Documentation: http://cran.r-project.org/web/packages/neuroUp/neuroUp.pdf
- License: MIT + file LICENSE
-
Latest release: 0.3.1
published almost 2 years ago
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Dependent packages count: 28.3%
Dependent repos count: 35.0%
Average: 50.0%
Downloads: 86.7%
Maintainers (1)
Last synced:
10 months ago
Dependencies
DESCRIPTION
cran
- dplyr * imports
- ggplot2 * imports
- psychometric * imports
- tibble * imports
- tidyr * imports
- testthat >= 3.0.0 suggests