Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.2%) to scientific vocabulary
Last synced: 10 months ago
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JSON representation
Repository
Biological Sequences Retrieval and Analysis
Basic Info
Statistics
- Stars: 3
- Watchers: 3
- Forks: 1
- Open Issues: 1
- Releases: 2
Created about 3 years ago
· Last pushed over 1 year ago
Metadata Files
Readme
Changelog
Codemeta
README.md
seqinr: Biological Sequences Retrieval and Analysis
seqinron CRAN: https://cran.r-project.org/web/packages/seqinr/index.html
``` install.packages("seqinr")
```
seqinron R-forge: https://seqinr.r-forge.r-project.org/
No longer updated.
seqinron GitHub: https://github.com/lbbe-software/seqinr
require("devtools")
install_github("lbbe-software/seqinr")
Owner
- Name: lbbe-software
- Login: lbbe-software
- Kind: organization
- Location: France
- Repositories: 1
- Profile: https://github.com/lbbe-software
CodeMeta (codemeta.json)
{
"@context": "https://doi.org/10.5063/schema/codemeta-2.0",
"@type": "SoftwareSourceCode",
"identifier": "seqinr",
"description": "Exploratory data analysis and data visualization for biological sequence (DNA and protein) data. Seqinr includes utilities for sequence data management under the ACNUC system described in Gouy, M. et al. (1984) Nucleic Acids Res. 12:121-127 <doi:10.1093/nar/12.1Part1.121>.",
"name": "seqinr: Biological Sequences Retrieval and Analysis",
"relatedLink": [
"https://seqinr.r-forge.r-project.org/",
"https://CRAN.R-project.org/package=seqinr"
],
"codeRepository": "https://github.com/lbbe-software/seqinr",
"issueTracker": "https://github.com/lbbe-software/seqinr/issues",
"license": "https://spdx.org/licenses/GPL-2.0",
"version": "4.2.42",
"programmingLanguage": {
"@type": "ComputerLanguage",
"name": "R",
"url": "https://r-project.org"
},
"runtimePlatform": "R version 4.4.3 (2025-02-28)",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"author": [
{
"@type": "Person",
"givenName": "Delphine",
"familyName": "Charif"
},
{
"@type": "Person",
"givenName": [
"Jean",
"R."
],
"familyName": "Lobry"
}
],
"contributor": [
{
"@type": "Person",
"givenName": "Olivier",
"familyName": "Clerc"
},
{
"@type": "Person",
"givenName": "Carolin",
"familyName": "Frank"
},
{
"@type": "Person",
"givenName": "Anamaria",
"familyName": "Necşulea"
},
{
"@type": "Person",
"givenName": "Leonor",
"familyName": "Palmeira"
},
{
"@type": "Person",
"givenName": "Guy",
"familyName": "Perrière"
}
],
"copyrightHolder": [
{
"@type": "Person",
"givenName": [
"Jean",
"R."
],
"familyName": "Lobry"
}
],
"maintainer": [
{
"@type": "Person",
"givenName": "Simon",
"familyName": "Penel",
"email": "simon.penel@univ-lyon1.fr"
}
],
"softwareRequirements": {
"1": {
"@type": "SoftwareApplication",
"identifier": "R",
"name": "R",
"version": ">= 2.10.0"
},
"2": {
"@type": "SoftwareApplication",
"identifier": "ade4",
"name": "ade4",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=ade4"
},
"3": {
"@type": "SoftwareApplication",
"identifier": "segmented",
"name": "segmented",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=segmented"
},
"SystemRequirements": "zlib headers and library."
},
"fileSize": "5446.89KB",
"citation": [
{
"datePublished": "2007",
"author": [
{
"@type": "Person",
"givenName": "D.",
"familyName": "Charif"
},
{
"@type": "Person",
"givenName": "J.R.",
"familyName": "Lobry"
}
],
"name": "Seqin{R} 1.0-2: a contributed package to the {R} project for statistical computing devoted to biological sequences retrieval and analysis.",
"description": "{ISBN :} 978-3-540-35305-8",
"pagination": "207-232"
}
],
"releaseNotes": "https://github.com/lbbe-software/seqinr/blob/main/NEWS",
"readme": "https://github.com/lbbe-software/seqinr/blob/main/README.md",
"contIntegration": "https://github.com/lbbe-software/seqinr/actions",
"developmentStatus": "https://www.repostatus.org/#active"
}
GitHub Events
Total
- Issues event: 1
- Issue comment event: 5
- Push event: 3
- Pull request event: 4
Last Year
- Issues event: 1
- Issue comment event: 5
- Push event: 3
- Pull request event: 4
Packages
- Total packages: 1
-
Total downloads:
- cran 14,373 last-month
- Total docker downloads: 149,595
- Total dependent packages: 71
- Total dependent repositories: 196
- Total versions: 25
- Total maintainers: 1
cran.r-project.org: seqinr
Biological Sequences Retrieval and Analysis
- Homepage: https://seqinr.r-forge.r-project.org/
- Documentation: http://cran.r-project.org/web/packages/seqinr/seqinr.pdf
- License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
-
Latest release: 4.2-36
published over 2 years ago
Rankings
Dependent packages count: 1.2%
Dependent repos count: 1.3%
Downloads: 3.5%
Average: 13.1%
Forks count: 21.0%
Docker downloads count: 21.0%
Stargazers count: 30.8%
Maintainers (1)
Last synced:
10 months ago
Dependencies
.github/workflows/R-CMD-check.yaml
actions
- actions/checkout v3 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION
cran
- R >= 2.10.0 depends
- ade4 * imports
- segmented * imports