seqinr

Biological Sequences Retrieval and Analysis

https://github.com/lbbe-software/seqinr

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
  • Academic email domains
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (7.2%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Biological Sequences Retrieval and Analysis

Basic Info
  • Host: GitHub
  • Owner: lbbe-software
  • Language: R
  • Default Branch: main
  • Homepage:
  • Size: 23.1 MB
Statistics
  • Stars: 3
  • Watchers: 3
  • Forks: 1
  • Open Issues: 1
  • Releases: 2
Created about 3 years ago · Last pushed over 1 year ago
Metadata Files
Readme Changelog Codemeta

README.md

seqinr: Biological Sequences Retrieval and Analysis

CRAN_Release_Badge CRAN Downloads R-CMD-check License: GPL v3 Project Status: Active – The project has reached a stable, usable state and is being actively developed. SWH

  • seqinr on CRAN: https://cran.r-project.org/web/packages/seqinr/index.html

``` install.packages("seqinr")

```

  • seqinr on R-forge: https://seqinr.r-forge.r-project.org/

No longer updated.

  • seqinr on GitHub: https://github.com/lbbe-software/seqinr

require("devtools") install_github("lbbe-software/seqinr")

Owner

  • Name: lbbe-software
  • Login: lbbe-software
  • Kind: organization
  • Location: France

CodeMeta (codemeta.json)

{
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  "@type": "SoftwareSourceCode",
  "identifier": "seqinr",
  "description": "Exploratory data analysis and data visualization for biological sequence (DNA and protein) data. Seqinr includes utilities for sequence data management under the ACNUC system described in Gouy, M. et al. (1984) Nucleic Acids Res. 12:121-127 <doi:10.1093/nar/12.1Part1.121>.",
  "name": "seqinr: Biological Sequences Retrieval and Analysis",
  "relatedLink": [
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  "codeRepository": "https://github.com/lbbe-software/seqinr",
  "issueTracker": "https://github.com/lbbe-software/seqinr/issues",
  "license": "https://spdx.org/licenses/GPL-2.0",
  "version": "4.2.42",
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    "name": "R",
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  "runtimePlatform": "R version 4.4.3 (2025-02-28)",
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    "@type": "Organization",
    "name": "Comprehensive R Archive Network (CRAN)",
    "url": "https://cran.r-project.org"
  },
  "author": [
    {
      "@type": "Person",
      "givenName": "Delphine",
      "familyName": "Charif"
    },
    {
      "@type": "Person",
      "givenName": [
        "Jean",
        "R."
      ],
      "familyName": "Lobry"
    }
  ],
  "contributor": [
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      "givenName": "Olivier",
      "familyName": "Clerc"
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  "copyrightHolder": [
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      "familyName": "Lobry"
    }
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  "maintainer": [
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      "@type": "Person",
      "givenName": "Simon",
      "familyName": "Penel",
      "email": "simon.penel@univ-lyon1.fr"
    }
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  "softwareRequirements": {
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      "@type": "SoftwareApplication",
      "identifier": "R",
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      "version": ">= 2.10.0"
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  "citation": [
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      "datePublished": "2007",
      "author": [
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          "givenName": "D.",
          "familyName": "Charif"
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          "givenName": "J.R.",
          "familyName": "Lobry"
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      "name": "Seqin{R} 1.0-2: a contributed package to the {R} project for statistical computing devoted to biological sequences retrieval and analysis.",
      "description": "{ISBN :} 978-3-540-35305-8",
      "pagination": "207-232"
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  ],
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  "readme": "https://github.com/lbbe-software/seqinr/blob/main/README.md",
  "contIntegration": "https://github.com/lbbe-software/seqinr/actions",
  "developmentStatus": "https://www.repostatus.org/#active"
}

GitHub Events

Total
  • Issues event: 1
  • Issue comment event: 5
  • Push event: 3
  • Pull request event: 4
Last Year
  • Issues event: 1
  • Issue comment event: 5
  • Push event: 3
  • Pull request event: 4

Packages

  • Total packages: 1
  • Total downloads:
    • cran 14,373 last-month
  • Total docker downloads: 149,595
  • Total dependent packages: 71
  • Total dependent repositories: 196
  • Total versions: 25
  • Total maintainers: 1
cran.r-project.org: seqinr

Biological Sequences Retrieval and Analysis

  • Versions: 25
  • Dependent Packages: 71
  • Dependent Repositories: 196
  • Downloads: 14,373 Last month
  • Docker Downloads: 149,595
Rankings
Dependent packages count: 1.2%
Dependent repos count: 1.3%
Downloads: 3.5%
Average: 13.1%
Forks count: 21.0%
Docker downloads count: 21.0%
Stargazers count: 30.8%
Maintainers (1)
Last synced: 10 months ago

Dependencies

.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v3 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION cran
  • R >= 2.10.0 depends
  • ade4 * imports
  • segmented * imports