Data

Tools

Indexes

Applications

Experiments

Open Source Science

crispr-screens

Snakemake workflow for CRISPR-Cas9 screen analysis

https://github.com/niekwit/crispr-screens

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 3 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (6.4%) to scientific vocabulary

Keywords

bioinformatics-pipeline crispr-screen-analysis snakemake-workflow
Last synced: 6 months ago · JSON representation ·

Repository

Snakemake workflow for CRISPR-Cas9 screen analysis

Basic Info
  • Host: GitHub
  • Owner: niekwit
  • License: mit
  • Language: Python
  • Default Branch: main
  • Homepage:
  • Size: 35.7 MB
Statistics
  • Stars: 6
  • Watchers: 2
  • Forks: 1
  • Open Issues: 1
  • Releases: 10
Topics
bioinformatics-pipeline crispr-screen-analysis snakemake-workflow
Created over 2 years ago · Last pushed 7 months ago
Metadata Files
Readme License Citation

README.md

Snakemake workflow: crispr-screens

DOI Snakemake Tests

GPSW Logo

A Snakemake workflow for the analysis of CRISPR screens.

If you use this workflow in a paper, don't forget to give credits to the authors by citing the URL of this (original) repository and its DOI (see above).

Instructions of how to use crispr-screens can be found here:

https://crispr-screens.readthedocs.io/en/latest/

Owner

  • Name: Niek Wit
  • Login: niekwit
  • Kind: user
  • Location: Cambridge, UK
  • Company: University of Cambridge

Bioinformatician @ University of Cambridge working in the labs of Prof. James Nathan and Prof. Paul Lehner

Citation (CITATION.cff) 

cff-version: 1.2.0
title: crispr-screens
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - given-names: Niek
    family-names: Wit
    email: nw416@cam.ac.uk
    affiliation: University of Cambridge
    orcid: https://orcid.org/0009-0002-4330-5333
repository-code: 'https://github.com/niekwit/crispr-screens'
license: MIT
doi: 10.5281/zenodo.10286661

GitHub Events

Total
  • Create event: 7
  • Issues event: 11
  • Release event: 3
  • Watch event: 3
  • Delete event: 4
  • Issue comment event: 6
  • Push event: 90
  • Pull request review event: 16
  • Pull request review comment event: 12
  • Pull request event: 9
  • Fork event: 1
Last Year
  • Create event: 7
  • Issues event: 11
  • Release event: 3
  • Watch event: 3
  • Delete event: 4
  • Issue comment event: 6
  • Push event: 90
  • Pull request review event: 16
  • Pull request review comment event: 12
  • Pull request event: 9
  • Fork event: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 5
  • Total pull requests: 5
  • Average time to close issues: 27 days
  • Average time to close pull requests: 42 minutes
  • Total issue authors: 1
  • Total pull request authors: 1
  • Average comments per issue: 0.6
  • Average comments per pull request: 0.4
  • Merged pull requests: 3
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 5
  • Pull requests: 5
  • Average time to close issues: 27 days
  • Average time to close pull requests: 42 minutes
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 0.6
  • Average comments per pull request: 0.4
  • Merged pull requests: 3
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • niekwit (5)
Pull Request Authors
  • niekwit (5)
Top Labels
Issue Labels
enhancement (3) bug (1) documentation (1)
Pull Request Labels
enhancement (2) bug (1) documentation (1)

Dependencies

.github/workflows/conventional-prs.yml actions
  • amannn/action-semantic-pull-request v3.4.0 composite
.github/workflows/main.yml actions
  • actions/checkout v2 composite
  • github/super-linter v4 composite
  • snakemake/snakemake-github-action v1.24.0 composite
.github/workflows/release-please.yml actions
  • GoogleCloudPlatform/release-please-action v2 composite