Recent Releases of crispr-screens
crispr-screens - v0.9.0
What's Changed
- feat: enhancements raised in issue #4 by @niekwit in https://github.com/niekwit/crispr-screens/pull/5
- feat: Cram as input file format by @niekwit in https://github.com/niekwit/crispr-screens/pull/7
- feat: added MAGeCK MLE by @niekwit in https://github.com/niekwit/crispr-screens/pull/9
- docs: Improved documentation by @niekwit in https://github.com/niekwit/crispr-screens/pull/11
Full Changelog: https://github.com/niekwit/crispr-screens/compare/v0.8.1...v0.9.0
- Python
Published by niekwit 10 months ago
crispr-screens - v0.8.1
What's Changed
- fix: 1 git not found in rule install drugz v0.8.0 by @niekwit in https://github.com/niekwit/crispr-screens/pull/2
Full Changelog: https://github.com/niekwit/crispr-screens/compare/v0.8.0...v0.8.1
- Python
Published by niekwit about 1 year ago
crispr-screens - v0.8.0
- Application of CRISPRcleanR to correct non-gene biases for BAGEL2, DrugZ and MAGeCK input
- Generation of ROC curves and PR plots at gene/sgRNA level with CRISPRcleanR
- Plotting of DrugZ results
- Replaced EnrichR with g:Profiler2
Full Changelog: https://github.com/niekwit/crispr-screens/compare/v0.7.0...v0.8.0
- Python
Published by niekwit about 1 year ago
crispr-screens - v0.6.1
Added option to choose custom (non-)essential gene lists for BAGEL2, and updated to latest wrapper version.
- Python
Published by niekwit over 1 year ago
crispr-screens - v0.6.0
New in v0.6.0:
- Implementation of CNV correction for MAGeCK
- Pathway analysis of MAGeCK results
- Python
Published by niekwit over 1 year ago
crispr-screens - v0.5.3
Workflow can now be run containerized.
- Python
Published by niekwit almost 2 years ago
crispr-screens - v0.5.2
Fixed cutadapt arguments and validation of config.yaml/stats.csv with JSON schemas
- Python
Published by niekwit almost 2 years ago
crispr-screens - v0.5.1
Improvements to code (increased readability, etc.)
- Python
Published by niekwit about 2 years ago