vivarium-public-health
Vivarium microsimulation tools used to model diseases and interventions.
Science Score: 46.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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✓Academic publication links
Links to: zenodo.org -
✓Committers with academic emails
17 of 27 committers (63.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.7%) to scientific vocabulary
Last synced: 7 months ago
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JSON representation
Repository
Vivarium microsimulation tools used to model diseases and interventions.
Basic Info
- Host: GitHub
- Owner: ihmeuw
- License: bsd-3-clause
- Language: Python
- Default Branch: main
- Size: 3.21 MB
Statistics
- Stars: 22
- Watchers: 10
- Forks: 7
- Open Issues: 2
- Releases: 72
Created over 7 years ago
· Last pushed 7 months ago
Metadata Files
Readme
Changelog
Contributing
License
Code of conduct
Codeowners
Zenodo
README.rst
Vivarium Public Health
======================
.. image:: https://badge.fury.io/py/vivarium-public-health.svg
:target: https://badge.fury.io/py/vivarium-public-health
.. image:: https://github.com/ihmeuw/vivarium_public_health/actions/workflows/build.yml/badge.svg?branch=main
:target: https://github.com/ihmeuw/vivarium_public_health
:alt: Latest Version
.. image:: https://readthedocs.org/projects/vivarium_public_health/badge/?version=latest
:target: https://vivarium_public_health.readthedocs.io/en/latest/?badge=latest
:alt: Latest Docs
.. image:: https://zenodo.org/badge/141212278.svg
:target: https://zenodo.org/badge/latestdoi/141212278
This library contains several components for for modelling diseases and their interventions.
You can install ``vivarium_public_health`` from PyPI with pip:
``> pip install vivarium_public_health``
or build it from source with
``> git clone https://github.com/ihmeuw/vivarium_public_health.git``
``> cd vivarium_public_health``
``> python setup.py install``
`Check out the docs!
Owner
- Name: Institute for Health Metrics and Evaluation
- Login: ihmeuw
- Kind: organization
- Email: ihme@healthdata.org
- Location: Seattle, WA
- Website: http://www.healthdata.org/
- Repositories: 152
- Profile: https://github.com/ihmeuw
Open source public health tools and research projects created by teams at the IHME.
GitHub Events
Total
- Release event: 17
- Watch event: 1
- Delete event: 45
- Issue comment event: 5
- Push event: 176
- Pull request review comment event: 149
- Pull request review event: 180
- Pull request event: 87
- Create event: 64
Last Year
- Release event: 17
- Watch event: 1
- Delete event: 45
- Issue comment event: 5
- Push event: 176
- Pull request review comment event: 149
- Pull request review event: 180
- Pull request event: 87
- Create event: 64
Committers
Last synced: about 3 years ago
All Time
- Total Commits: 2,166
- Total Committers: 27
- Avg Commits per committer: 80.222
- Development Distribution Score (DDS): 0.726
Top Committers
| Name | Commits | |
|---|---|---|
| James Collins | c****k@u****u | 593 |
| emumford | e****d@u****u | 508 |
| Kate Wilson | k****7@u****u | 287 |
| Alec Deason | a****d@u****u | 247 |
| Michelle Park | h****3@u****u | 137 |
| Cody | c****t@u****u | 133 |
| Rajan Mudambi | 1****i@u****m | 95 |
| KjellSwedin | k****s@u****u | 49 |
| Rob Moss | r****v@g****m | 24 |
| A. Flaxman | a****e@a****u | 16 |
| Steve Bachmeier | s****i@u****u | 10 |
| Kate Wilson | 3****n@u****m | 10 |
| pandersen13 | 5****3@u****m | 10 |
| eeldren | e****n@u****u | 7 |
| Abraham Flaxman | a****e@u****u | 6 |
| kwilson7 | k****1@g****m | 6 |
| Michelle Park | h****p@g****m | 6 |
| Matthew Kappel | m****l@u****u | 5 |
| krosett | U****t@u****u | 4 |
| albrja | 3****a@u****m | 3 |
| zrankin | z****n@u****u | 2 |
| Zachary Dingels | d****z@u****u | 2 |
| Alec Deason | a****d@c****u | 2 |
| Hussain Jafari | h****i@g****m | 1 |
| Cody Horst | c****2@g****m | 1 |
| camagallen | c****a@g****m | 1 |
| Zachary Dingels | d****z@c****u | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 7 months ago
All Time
- Total issues: 0
- Total pull requests: 297
- Average time to close issues: N/A
- Average time to close pull requests: 13 days
- Total issue authors: 0
- Total pull request authors: 10
- Average comments per issue: 0
- Average comments per pull request: 0.1
- Merged pull requests: 254
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 39
- Average time to close issues: N/A
- Average time to close pull requests: 1 day
- Issue authors: 0
- Pull request authors: 5
- Average comments per issue: 0
- Average comments per pull request: 0.08
- Merged pull requests: 27
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
- rmudambi (125)
- stevebachmeier (93)
- albrja (86)
- hussain-jafari (37)
- patricktnast (19)
- collijk (19)
- mattkappel (18)
- KjellSwedin (7)
- aflaxman (3)
- halfhorst (2)
Top Labels
Issue Labels
Pull Request Labels
prototype (2)
on hold (1)
Packages
- Total packages: 1
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Total downloads:
- pypi 3,578 last-month
- Total dependent packages: 0
- Total dependent repositories: 6
- Total versions: 128
- Total maintainers: 7
pypi.org: vivarium-public-health
Components for modelling diseases, risks, and interventions with ``vivarium``
- Homepage: https://github.com/ihmeuw/vivarium_public_health
- Documentation: https://vivarium-public-health.readthedocs.io/
- License: BSD-3-Clause
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Latest release: 4.3.6
published 7 months ago
Rankings
Downloads: 3.7%
Dependent repos count: 6.1%
Dependent packages count: 7.4%
Average: 9.0%
Forks count: 13.4%
Stargazers count: 14.5%
Last synced:
7 months ago
Dependencies
.github/workflows/build.yml
actions
- actions/checkout v3 composite
- actions/setup-python v4 composite
.github/workflows/deploy.yml
actions
- actions/checkout v3 composite
- actions/setup-python v4 composite
pyproject.toml
pypi
setup.py
pypi