vivarium-public-health - v4.3.5

What's Changed

• Use vivariumbuildutils centralized dependencies by @stevebachmeier in https://github.com/ihmeuw/vivariumpublichealth/pull/532

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v4.3.4...v4.3.5

- Python
Published by stevebachmeier 8 months ago

vivarium-public-health - v4.3.4

What's Changed

• Fix pandas futurewarnings without pinning pandas by @stevebachmeier in https://github.com/ihmeuw/vivariumpublichealth/pull/538

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v4.3.3...v4.3.4

- Python
Published by stevebachmeier 8 months ago

vivarium-public-health - v4.3.3

What's Changed

• Albrja/mic 6186/intervention component by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/527
• bugfixes and backwards compatibility by @stevebachmeier in https://github.com/ihmeuw/vivariumpublichealth/pull/534
• release v4.3.1 by @stevebachmeier in https://github.com/ihmeuw/vivariumpublichealth/pull/535
• Reintroduce deprecated risk property to RiskEffect by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/536
• Revert Intervention by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/537

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v4.2.6...v4.3.3

- Python
Published by rmudambi 8 months ago

vivarium-public-health - v4.2.6

What's Changed

• Sbachmei/mic 6114/add make build env by @stevebachmeier in https://github.com/ihmeuw/vivariumpublichealth/pull/533

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v4.2.5...v4.2.6

- Python
Published by stevebachmeier 8 months ago

vivarium-public-health - v4.2.5

What's Changed

• Fix futurewarnings by @stevebachmeier in https://github.com/ihmeuw/vivariumpublichealth/pull/531

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v4.2.4...v4.2.5

- Python
Published by stevebachmeier 9 months ago

vivarium-public-health - v4.2.4

What's Changed

• support pinning vivariumbuildutils by @stevebachmeier in https://github.com/ihmeuw/vivariumpublichealth/pull/529

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v4.2.3...v4.2.4

- Python
Published by stevebachmeier 9 months ago

vivarium-public-health - v4.2.3

What's Changed

• Fix bug in validating crude birth rates by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/528

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v4.2.2...v4.2.3

- Python
Published by albrja 9 months ago

vivarium-public-health - v4.2.2

What's Changed

• Albrja/mic-6189/Update lct method by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/526

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v4.2.1...v4.2.2

- Python
Published by albrja 9 months ago

vivarium-public-health - v4.2.1

What's Changed

• Albrja/mic-6129/Fix bug in LBWSG exposure test by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/525

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v4.2.0...v4.2.1

- Python
Published by albrja 9 months ago

vivarium-public-health - v4.2.0

What's Changed

• Albrja/mic-5971/lbwsg-exposure-data by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/524

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v4.1.1...v4.2.0

- Python
Published by albrja 10 months ago

vivarium-public-health - v4.1.1

What's Changed

• Albrja/mic-5943/mypy-jenkins by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/522
• Albrja/mic-5621/observer-get-configuration by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/523

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v4.1.0...v4.1.1

- Python
Published by albrja 11 months ago

vivarium-public-health - v4.1.0

What's Changed

• Albrja/mic-6068/rate-to-probability-configuration by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/521

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v4.0.2...v4.1.0

- Python
Published by albrja 11 months ago

vivarium-public-health - v4.0.2

What's Changed

• Albrja/mic-5776/remove-untracking-age by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/520

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v4.0.1...v4.0.2

- Python
Published by albrja 11 months ago

vivarium-public-health - v4.0.1

What's Changed

• Albrja/mic-5451/Epic/update required resrouces by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/519

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v4.0.0...v4.0.1

- Python
Published by albrja about 1 year ago

vivarium-public-health - v4.0.0

What's Changed

• Delete .github/workflows/build.yml by @patricktnast in https://github.com/ihmeuw/vivariumpublichealth/pull/512
• Albright/mic-5889/use-birth-exposure-key by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/513

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.2.2...v4.0.0

- Python
Published by albrja about 1 year ago

vivarium-public-health - v3.2.2

What's Changed

• Albrja/mic-5878/Use RR data to get age intervals for LBWSGRiskEffect by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/511

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.2.1...v3.2.2

- Python
Published by albrja about 1 year ago

vivarium-public-health - v3.2.1

What's Changed

• Use Shared Makefiles by @patricktnast in https://github.com/ihmeuw/vivariumpublichealth/pull/506
• Albrja/mic-5802/spinx-config by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/507
• Albrja/mic-5827/Pin isort by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/509
• Add Python Versions json by @patricktnast in https://github.com/ihmeuw/vivariumpublichealth/pull/508

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.2.0...v3.2.1

- Python
Published by patricktnast about 1 year ago

vivarium-public-health - v3.2.0

What's Changed

• Albrja/bugfix/mic-5768/lbwsg-riskeffect-rr-pipeline by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/504

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.1.5...v3.2.0

- Python
Published by albrja about 1 year ago

vivarium-public-health - v3.1.5

What's Changed

• Branch name in conda env in jenkinsfile by @patricktnast in https://github.com/ihmeuw/vivariumpublichealth/pull/498
• Put VPH on the re-usable pipeline by @patricktnast in https://github.com/ihmeuw/vivariumpublichealth/pull/503
• InteractiveContext Bugfix by @patricktnast in https://github.com/ihmeuw/vivariumpublichealth/pull/505

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.1.4...v3.1.5

- Python
Published by patricktnast about 1 year ago

vivarium-public-health - v3.1.4

What's Changed

• Release candidate v3.1.4 by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/502

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.1.3...v3.1.4

- Python
Published by rmudambi over 1 year ago

vivarium-public-health - v3.1.3

What's Changed

• Albrja/mic 5277/relative-risk-pipeline-for-riskeffect by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/496

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.1.2...v3.1.3

- Python
Published by albrja over 1 year ago

vivarium-public-health - v3.1.2

What's Changed

• rely on Machine's ontimestep and ontimestepcleanup method by @rmudambi in https://github.com/ihmeuw/vivariumpublic_health/pull/494
• drop python 3.9 changes by @hussain-jafari in https://github.com/ihmeuw/vivariumpublichealth/pull/493

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.1.1...v3.1.2

- Python
Published by hussain-jafari over 1 year ago

vivarium-public-health - v3.1.1

What's Changed

• use callables in lookup table data config defaults by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/491
• rename DiseaseModel initialstate to residualstate by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/492

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.1.0...v3.1.1

- Python
Published by rmudambi over 1 year ago

vivarium-public-health - v3.1.0

What's Changed

• drop python 3.9 by @hussain-jafari in https://github.com/ihmeuw/vivariumpublichealth/pull/490

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.0.11...v3.1.0

- Python
Published by hussain-jafari over 1 year ago

vivarium-public-health - v3.0.11

What's Changed

• Albrja/mic 5469/add-input-flags by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/488
• Albrja/mic-5485/scaled-population by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/489

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.0.10...v3.0.11

- Python
Published by albrja over 1 year ago

vivarium-public-health - v3.0.10

What's Changed

• Albrja/Mic-5240Slack developer on failure by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/485
• Albrja/mic 5267/build from vbu by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/486
• Sbachmei/mic 5125/import subpackages to top level namespace by @stevebachmeier in https://github.com/ihmeuw/vivariumpublichealth/pull/487

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.0.9...v3.0.10

- Python
Published by stevebachmeier over 1 year ago

vivarium-public-health - v3.0.9

What's Changed

• fix broken import by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/484

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.0.8...v3.0.9

- Python
Published by rmudambi over 1 year ago

vivarium-public-health - v3.0.8

What's Changed

• fix broken test due to populationview setter restrictions by @rmudambi in https://github.com/ihmeuw/vivariumpublic_health/pull/483

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.0.7...v3.0.8

- Python
Published by rmudambi over 1 year ago

vivarium-public-health - v3.0.7

What's Changed

• properly create the populationview in RateTransition by @rmudambi in https://github.com/ihmeuw/vivariumpublic_health/pull/482

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.0.6...v3.0.7

- Python
Published by rmudambi over 1 year ago

vivarium-public-health - v3.0.6

What's Changed

• rrsource bugfix by @hussain-jafari in https://github.com/ihmeuw/vivariumpublic_health/pull/480
• Bugfix/sbachmei/mic 5296 exposure column for nonloglinear risk effects by @stevebachmeier in https://github.com/ihmeuw/vivariumpublichealth/pull/481

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.0.5...v3.0.6

- Python
Published by stevebachmeier over 1 year ago

vivarium-public-health - v3.0.5

What's Changed

• Results docs cleanup by @stevebachmeier in https://github.com/ihmeuw/vivariumpublichealth/pull/479

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.0.4...v3.0.5

- Python
Published by stevebachmeier over 1 year ago

vivarium-public-health - v3.0.4

What's Changed

• Mic-5211/cron-job by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/469
• Release v3.0.4 by @stevebachmeier in https://github.com/ihmeuw/vivariumpublichealth/pull/478

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.0.3...v3.0.4

- Python
Published by stevebachmeier over 1 year ago

vivarium-public-health - v3.0.3

What's Changed

• move script into the .github folder by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/472
• Use external dependency branch script by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/473
• Bugfix/sbachmei/mic 5219 exclude all but one results category by @stevebachmeier in https://github.com/ihmeuw/vivariumpublichealth/pull/470
• HACK to make ASFR component work + NeonatalSWC by @aflaxman in https://github.com/ihmeuw/vivariumpublichealth/pull/449

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.0.2...v3.0.3

- Python
Published by albrja over 1 year ago

vivarium-public-health - v3.0.2

What's Changed

• parameterize getupstreambranch.sh by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/471

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.0.1...v3.0.2

- Python
Published by rmudambi over 1 year ago

vivarium-public-health - v3.0.1

What's Changed

• Mic-5217/jenkins-upstream by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/466
• fix bug in build script when the upstream vivarium branch should be main by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/468

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v3.0.0...v3.0.1

- Python
Published by rmudambi over 1 year ago

vivarium-public-health - v3.0.0

What's Changed

Breaking changes: * Update components to use new Vivarium lookup table configuration * Update Observers to use new Vivarium results interface classes and methods * Change the "allcauses" disability weight pipeline from "disabilityweight" to "allcauses.disabilityweight"

Major changes: * Refactor risk components to standardize/simplify risk exposure distributions * Enable the setting of CSMR using a causes configuration parser * Implement a PublicHealthObserver to help enforce the existence of "measure", "entitytype", "subentity", and "entity" columns in the results * Refactor Risk component to create exposure column in state table * Add support for non-loglinear relative risks

Other changes: * Use external layered-config-tree package instead of Vivarium ConfigTree class * Install matching upstream branches in github builds * Stop writing seed and draw columns to the results * Automatically run Jenkins builds on push or pull request * Various other minor updates

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v2.3.3...v3.0.0

- Python
Published by stevebachmeier over 1 year ago

vivarium-public-health - v2.3.3

What's Changed

• Mic-5121/Pin numpy below 2.0 by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/434

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v2.3.2...v2.3.3

- Python
Published by albrja almost 2 years ago

vivarium-public-health - v2.3.2

What's Changed

• Fix order causes of death by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/388

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v2.3.1...v2.3.2

- Python
Published by albrja about 2 years ago

vivarium-public-health - v2.3.1

What's Changed

• Mic-4918/bugfix by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/387

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v2.3.0...v2.3.1

- Python
Published by albrja about 2 years ago

vivarium-public-health - v2.3.0

What's Changed

• Update population configuration keys by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/386

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v2.2.3...v2.3.0

- Python
Published by albrja about 2 years ago

vivarium-public-health - v2.2.3

What's Changed

• Docs-link by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/384
• Aggregate mortality observer switch by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/385

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v2.2.2...v2.2.3

- Python
Published by albrja about 2 years ago

vivarium-public-health - v2.2.2

What's Changed

• Fix bug to update midpoint of age bins by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/383

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v2.2.1...v2.2.2

- Python
Published by albrja about 2 years ago

vivarium-public-health - v2.2.1

What's Changed

*Update LinearScaleUp default ocnfiguration

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v2.2.0...v2.2.1

- Python
Published by albrja about 2 years ago

vivarium-public-health - v2.2.0

What's Changed

• Update CODEOWNERS by @patricktnast in https://github.com/ihmeuw/vivariumpublichealth/pull/378
• Create CausesConfigurationParser by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/380

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v2.1.4...v2.2.0

- Python
Published by rmudambi about 2 years ago

vivarium-public-health - v2.1.4

What's Changed

• Exclude undesirable init arguments from name and repr by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/374

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v2.1.3...v2.1.4

- Python
Published by rmudambi about 2 years ago

vivarium-public-health - Patch Release v2.1.3

What's Changed

• Update pypi publish with 2FA by @patricktnast in https://github.com/ihmeuw/vivariumpublichealth/pull/375

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v2.1.2...v2.1.3

- Python
Published by patricktnast about 2 years ago

vivarium-public-health - v2.1.2

What's Changed

• Mic-4384/Notify when workflow for schedule or deploy fails by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/370
• Fix disease tests and documentation build by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/371
• Mic-4666/Fix format for tests by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/372
• Fix failing Disease tests by @patricktnast in https://github.com/ihmeuw/vivariumpublichealth/pull/373

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v2.1.1...v2.1.2

- Python
Published by patricktnast over 2 years ago

vivarium-public-health - Feature release

• Perform actions in DiseaseState setup using class methods rather than hardcoding to allow for cleaner subclassing

- Python
Published by mattkappel over 2 years ago

vivarium-public-health - v2.1.1

What's Changed

• method based disease setup by @hussain-jafari in https://github.com/ihmeuw/vivariumpublichealth/pull/368
• Mic-4617/Drop support for python 3.12 by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/369

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v2.0.2...v2.1.1

- Python
Published by hussain-jafari over 2 years ago

vivarium-public-health - v2.1.0

What's Changed

• remission rate bugfix by @hussain-jafari in https://github.com/ihmeuw/vivariumpublichealth/pull/364
• Remove python3.8 by @hussain-jafari in https://github.com/ihmeuw/vivariumpublichealth/pull/36

- Python
Published by hussain-jafari over 2 years ago

vivarium-public-health - Address CopyWithSettingWarning

Makes a copy of agebins in stratification::getage_bins()

- Python
Published by stevebachmeier over 2 years ago

vivarium-public-health - v2.0.0

What's Changed

• Mic-4379Add schedule build by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/358
• Mic-4380/Run full test suite on schedule build by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/360
• Component Standardization by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/361

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v1.0.5...v2.0.0

- Python
Published by rmudambi over 2 years ago

vivarium-public-health -

- Python
Published by albrja over 2 years ago

vivarium-public-health - Patch release v1.0.3

What's Changed

• Fix Changelog Formatting by @patricktnast in https://github.com/ihmeuw/vivariumpublichealth/pull/340
• pass BaseDiseaseState kwargs up to the State constructor by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/342

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v1.0.2...v1.0.3

- Python
Published by rmudambi over 2 years ago

vivarium-public-health - Patch Release v1.0.2

What's Changed

• Feature/mic 4361 ci push vivarium branch by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/338
• Add alive == 'alive' to DiseaseObserver pop filter by @patricktnast in https://github.com/ihmeuw/vivariumpublichealth/pull/339

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v1.0.1...v1.0.2

- Python
Published by patricktnast over 2 years ago

vivarium-public-health - Patch Release v1.0.1

What's Changed

• VPH loads excess mortality rate data in wrong order by @patricktnast in https://github.com/ihmeuw/vivariumpublichealth/pull/336

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v1.0.0...v1.0.1

- Python
Published by patricktnast over 2 years ago

vivarium-public-health - Feature release v1.0.0

What's Changed

• Feature/results manager ng by @hussain-jafari in https://github.com/ihmeuw/vivariumpublichealth/pull/323
• Update vivariumpublichealth to use setuptoolsscm versioning by @mattkappel in https://github.com/ihmeuw/vivariumpublic_health/pull/324
• Refactor BasePopulation to make subclassing easier by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/325
• Make Mortality Observer act on Collect Metrics by @patricktnast in https://github.com/ihmeuw/vivariumpublichealth/pull/327
• filter observations to tracked simulants by @hussain-jafari in https://github.com/ihmeuw/vivariumpublichealth/pull/328
• have git ignore the version file by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/330
• Disable unused stratifications by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/331

New Contributors

• @patricktnast made their first contribution in https://github.com/ihmeuw/vivariumpublichealth/pull/327

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v0.11.0...v1.0.0

- Python
Published by mattkappel over 2 years ago

vivarium-public-health - Release v0.11.0

What's Changed

• support python 3.8-3.11 by @stevebachmeier in https://github.com/ihmeuw/vivariumpublichealth/pull/313
• Handle FutureWarning: Calling float on a single element Series by @mattkappel in https://github.com/ihmeuw/vivariumpublichealth/pull/315
• Refactor/transition names by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/316
• Release/v0.11.0 by @stevebachmeier in https://github.com/ihmeuw/vivariumpublichealth/pull/319
• releave v0.11.0 by @stevebachmeier in https://github.com/ihmeuw/vivariumpublichealth/pull/320

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v0.10.24...v0.11.0

- Python
Published by stevebachmeier almost 3 years ago

vivarium-public-health - Patch release

What's Changed

• Standardize transition get data functions by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/306
• Bugfix/state data funcs by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/308
• Use key columns from configuration for registersimulants by @mattkappel in https://github.com/ihmeuw/vivariumpublic_health/pull/309

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v0.10.23...v0.10.24

- Python
Published by mattkappel almost 3 years ago

vivarium-public-health - v0.10.23

What's Changed

• Throw error when subsetting relative risk data to empty dataframe by @hussain-jafari in https://github.com/ihmeuw/vivariumpublichealth/pull/298
• Fix validateresourcebin bug by @hussain-jafari in https://github.com/ihmeuw/vivariumpublichealth/pull/301
• Rename the 'forinitialization' argument for randomness streams to 'initializescrnattributes' by @collijk in https://github.com/ihmeuw/vivariumpublic_health/pull/302
• Update vivarium pin lower bound by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/304
• Release v0.10.23 by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/305

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v0.10.22...v0.10.23

- Python
Published by rmudambi almost 3 years ago

vivarium-public-health - Release v0.10.22

What's Changed

• Release v0.10.22 by @stevebachmeier in https://github.com/ihmeuw/vivariumpublichealth/pull/295
  • Update CI and setup for building python 3.7-3.10

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v0.10.21...v0.10.22

- Python
Published by stevebachmeier over 3 years ago

vivarium-public-health - v0.10.21

What's Changed

• Bugfix/sbachmei/mic 3304 register collect metrics listener by @stevebachmeier in https://github.com/ihmeuw/vivariumpublichealth/pull/291
• Feature/rr logging by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/292
• Develop by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/293

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v0.10.20...v0.10.21

- Python
Published by rmudambi over 3 years ago

vivarium-public-health - Release v0.10.20

What's Changed

• Release v0.10.20 by @stevebachmeier in https://github.com/ihmeuw/vivariumpublichealth/pull/290

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v0.10.19...v0.10.20

- Python
Published by stevebachmeier over 3 years ago

vivarium-public-health - Release v0.10.19

What's Changed

• implement LBWSG risk effect component by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/277
• enable configuration of the columns to use as the source of the LBWSG… by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/278
• set stratification groups of initialized simulants by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/279
• Collijk/bugfix/fix deprecation warnings in pandas df drop usage by @collijk in https://github.com/ihmeuw/vivariumpublichealth/pull/280
• Collijk/feature/allow sex subsetting of population by @collijk in https://github.com/ihmeuw/vivariumpublichealth/pull/281
• Rework test suite to depend less heavily on mocks and implementation. by @collijk in https://github.com/ihmeuw/vivariumpublichealth/pull/282
• Collijk/bugfix/results stratifier group on empty index by @collijk in https://github.com/ihmeuw/vivariumpublichealth/pull/283
• Bugfix/mortality observer totals by @albrja in https://github.com/ihmeuw/vivariumpublichealth/pull/284
• fix issue due applying mapper to empty data frame producing data fram… by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/285
• fix bug in lbwsg risk effect population view; address warnings by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/286
• refactor disease state to make it compatible with refactor of populat… by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/287
• add CODEOWNERS by @stevebachmeier in https://github.com/ihmeuw/vivariumpublichealth/pull/288
• Develop by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/289

New Contributors

• @stevebachmeier made their first contribution in https://github.com/ihmeuw/vivariumpublichealth/pull/288

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v0.10.18...v0.10.19

- Python
Published by rmudambi almost 4 years ago

vivarium-public-health - v0.10.18

What's Changed

• reorder ScaleUp component's default configs by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/261
• extend mortality component to account for unmodeled causes by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/262
• refactor risk effect to expose exposure to subclasses by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/263
• preliminary port of observers; initial draft of stratifier and mortal… by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/264
• implement disability observer with stratification by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/265
• filter causes without excess mortality or disability from their respe… by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/266
• implement risk observer stratification by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/267
• implement disease observer stratification by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/268
• add test for results stratifier by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/269
• throw an error if a mapper produces an invalid category by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/270
• Define RiskAttributableDisease transitions as TransitionStrings by @hussain-jafari in https://github.com/ihmeuw/vivariumpublichealth/pull/271
• Bugfix/death counts by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/273
• clean up mortality component and improve documentation by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/274
• Develop by @rmudambi in https://github.com/ihmeuw/vivariumpublichealth/pull/275

New Contributors

• @hussain-jafari made their first contribution in https://github.com/ihmeuw/vivariumpublichealth/pull/271

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v0.10.17...v0.10.18

- Python
Published by rmudambi almost 4 years ago

vivarium-public-health - CI update release

What's Changed

• Run black and isort and add to CI by @collijk in https://github.com/ihmeuw/vivariumpublichealth/pull/259
• Release candidate 0.10.17 by @collijk in https://github.com/ihmeuw/vivariumpublichealth/pull/260

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v0.10.16...v0.10.17

- Python
Published by collijk about 4 years ago

vivarium-public-health - Maintenance release

What's Changed

• Release candidate v0.10.16 by @collijk in https://github.com/ihmeuw/vivariumpublichealth/pull/253

Full Changelog: https://github.com/ihmeuw/vivariumpublichealth/compare/v0.10.15...v0.10.16

- Python
Published by collijk about 4 years ago

vivarium-public-health - Archival release

Archival release of Vivarium Public Health, a Python package providing Vivarium microsimulation tools used to model diseases and interventions.

- Python
Published by mattkappel over 4 years ago

vivarium-public-health -

- Python
Published by collijk over 6 years ago

vivarium-public-health -

- Python
Published by collijk almost 7 years ago

vivarium-public-health -

- Python
Published by collijk about 7 years ago

vivarium-public-health - Initial Release

- Python
Published by collijk over 7 years ago