caredensity

An R-Package to Calculate the Care Density or Fragmented Care Density given a Patient-Sharing Network

https://github.com/robindenz1/caredensity

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

○
CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
○
DOI references
○
Academic publication links
○
Academic email domains
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (16.7%) to scientific vocabulary

Keywords

care-coordination network-analysis patient-care

Last synced: 6 months ago · JSON representation

Repository

An R-Package to Calculate the Care Density or Fragmented Care Density given a Patient-Sharing Network

Basic Info

Host: GitHub
Owner: RobinDenz1
License: gpl-3.0
Language: R
Default Branch: main
Homepage: https://robindenz1.github.io/CareDensity/
Size: 1.12 MB

Statistics

Stars: 1
Watchers: 1
Forks: 0
Open Issues: 0
Releases: 0

Topics

care-coordination network-analysis patient-care

Created over 1 year ago · Last pushed over 1 year ago

Metadata Files

Readme Changelog License Codemeta

CareDensity

Author: Robin Denz

Description

CareDensity is a small R-Package which can be used to calculate the care density index and the fragmented care density.

Installation

A developmental version of this package may be installed from github using the remotes R-Package:

```R library(remotes)

remotes::install_github("RobinDenz1/CareDensity") ```

Bug Reports and Feature Requests

If you encounter any bugs or have any specific feature requests, please file an Issue.

Examples

Suppose you have the following patient-provider data:

R data <- data.frame(PatID=c("1", "1", "1", "2", "2", "3", "3", "4", "5"), ArztID=c("A", "C", "D", "A", "D", "A", "D", "D", "C"))

This is essentially a description of the following bipartite network:

The simple care density can then be calculated like this:

R care_density(data)

Citation

Use citation("CareDensity") to get the relevant citation information.

License

The contents of this repository are distributed under the GNU General Public License. You can find the full text of this License in this github repository. Alternatively, see http://www.gnu.org/licenses/.

Owner

Name: Robin Denz
Login: RobinDenz1
Kind: user

Repositories: 2
Profile: https://github.com/RobinDenz1

I am a researcher at the Ruhr-University of Bochum in Germany and am currently enrolled as a PhD Student in "Epidemiology & Clinical Research".

CodeMeta (codemeta.json)

{
  "@context": "https://doi.org/10.5063/schema/codemeta-2.0",
  "@type": "SoftwareSourceCode",
  "identifier": "CareDensity",
  "description": "Given a patient-sharing network, calculate either the classic care density as proposed by Pollack et al. (2013) <doi:10.1007/s11606-012-2104-7> or the fragmented care density as proposed by Engels et al. (2024) <doi:10.1186/s12874-023-02106-0>. By utilizing the 'igraph' and 'data.table' packages, the provided functions scale well for very large graphs.",
  "name": "CareDensity: Calculate the Care Density or Fragmented Care Density Given a Patient-Sharing Network",
  "relatedLink": "https://robindenz1.github.io/CareDensity/",
  "codeRepository": "https://github.com/RobinDenz1/CareDensity",
  "issueTracker": "https://github.com/RobinDenz1/CareDensity/issues",
  "license": "https://spdx.org/licenses/GPL-3.0",
  "version": "0.1.0",
  "programmingLanguage": {
    "@type": "ComputerLanguage",
    "name": "R",
    "url": "https://r-project.org"
  },
  "runtimePlatform": "R version 4.2.1 (2022-06-23 ucrt)",
  "author": [
    {
      "@type": "Person",
      "givenName": "Robin",
      "familyName": "Denz",
      "email": "robin.denz@rub.de"
    }
  ],
  "maintainer": [
    {
      "@type": "Person",
      "givenName": "Robin",
      "familyName": "Denz",
      "email": "robin.denz@rub.de"
    }
  ],
  "softwareSuggestions": [
    {
      "@type": "SoftwareApplication",
      "identifier": "knitr",
      "name": "knitr",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=knitr"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "rmarkdown",
      "name": "rmarkdown",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=rmarkdown"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "testthat",
      "name": "testthat",
      "version": ">= 3.2.1",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=testthat"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "covr",
      "name": "covr",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=covr"
    }
  ],
  "softwareRequirements": {
    "1": {
      "@type": "SoftwareApplication",
      "identifier": "MatrixExtra",
      "name": "MatrixExtra",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=MatrixExtra"
    },
    "2": {
      "@type": "SoftwareApplication",
      "identifier": "data.table",
      "name": "data.table",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=data.table"
    },
    "3": {
      "@type": "SoftwareApplication",
      "identifier": "igraph",
      "name": "igraph",
      "version": ">= 2.0.0",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=igraph"
    },
    "4": {
      "@type": "SoftwareApplication",
      "identifier": "utils",
      "name": "utils"
    },
    "SystemRequirements": null
  },
  "fileSize": "53.865KB",
  "releaseNotes": "https://github.com/RobinDenz1/CareDensity/blob/master/NEWS.md",
  "readme": "https://github.com/RobinDenz1/CareDensity/blob/main/README.md",
  "contIntegration": [
    "https://github.com/RobinDenz1/CareDensity/actions/workflows/R-CMD-check.yaml",
    "https://app.codecov.io/gh/RobinDenz1/CareDensity?branch=main"
  ],
  "developmentStatus": "https://www.repostatus.org/#active"
}

GitHub Events

Total

Watch event: 1
Push event: 4

Last Year

Watch event: 1
Push event: 4

Packages

Total packages: 1
Total downloads:
- cran 553 last-month

Total dependent packages: 0
Total dependent repositories: 0
Total versions: 1
Total maintainers: 1

cran.r-project.org: CareDensity

Calculate the Care Density or Fragmented Care Density Given a Patient-Sharing Network

Homepage: https://github.com/RobinDenz1/CareDensity
Documentation: http://cran.r-project.org/web/packages/CareDensity/CareDensity.pdf
License: GPL (≥ 3)
Latest release: 0.1.0
published over 1 year ago

Versions: 1
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 553 Last month

Rankings

Dependent packages count: 27.8%

Dependent repos count: 34.2%

Average: 49.7%

Downloads: 87.0%

Maintainers (1)

robin.denz@rub.de

Last synced: 7 months ago

Dependencies

.github/workflows/R-CMD-check.yaml actions

actions/checkout v4 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/pkgdown.yaml actions

JamesIves/github-pages-deploy-action v4.5.0 composite
actions/checkout v4 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

DESCRIPTION cran

MatrixExtra * depends
data.table * imports
igraph * imports
utils * imports
covr * suggests
knitr * suggests
rmarkdown * suggests
testthat >= 3.2.1 suggests

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science