natserv

:warning: ARCHIVED :warning: NatureServe R client

https://github.com/ropensci/natserv

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

○
CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
○
DOI references
○
Academic publication links
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Committers with academic emails
○
Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (9.7%) to scientific vocabulary

Keywords

r r-package rstats taxize taxonomy

Keywords from Contributors

genome mock http-mock geocode metagenomics ncbi-genbank proteome sequenced-genomes caching biodiversity

Last synced: 9 months ago · JSON representation

Repository

:warning: ARCHIVED :warning: NatureServe R client

Basic Info

Host: GitHub
Owner: ropensci
License: other
Language: R
Default Branch: master
Homepage:
Size: 378 KB

Statistics

Stars: 11
Watchers: 8
Forks: 7
Open Issues: 2
Releases: 5

Topics

r r-package rstats taxize taxonomy

Created over 9 years ago · Last pushed over 1 year ago

Metadata Files

Readme Changelog Contributing License Codemeta

README-not.md

natserv

natserv NatureServe R client

NatureServe is a non-profit organization that provides wildlife conservation related data to various groups including the public.

NatureServe site: https://services.natureserve.org
NatureServe API docs: https://explorer.natureserve.org/api-docs/

All functions in this package are prefixed with ns_ to prevent collision with other pkgs.

You no longer need an API key.

See also the taxize book (https://taxize.dev/) for a manual on working with taxonomic data in R, including with NatureServe data.

Installation

Stable version from CRAN

r install.packages("natserv")

Development version

r remotes::install_github("ropensci/natserv")

r library('natserv')

Search

```r nssearchcomb(text = "robin", page = 0, per_page = 5)

> $results

> # A tibble: 5 x 15

> recordType elementGlobalId uniqueId nsxUrl elcode scientificName

>

> 1 SPECIES 100637 ELEMENT… /Taxo… ABPBJ… Copsychus sau…

> 2 SPECIES 102323 ELEMENT… /Taxo… ABPBJ… Turdus grayi

> 3 SPECIES 102179 ELEMENT… /Taxo… ABPBJ… Turdus migrat…

> 4 SPECIES 105536 ELEMENT… /Taxo… ABPBJ… Turdus migrat…

> 5 SPECIES 105850 ELEMENT… /Taxo… ABPBJ… Turdus rufopa…

> # … with 23 more variables: formattedScientificName ,

> # primaryCommonName , primaryCommonNameLanguage ,

> # roundedGRank , nations , lastModified ,

> # classificationStatus , speciesGlobal$usesaCode ,

> # $cosewicCode , $saraCode , $synonyms ,

> # $otherCommonNames , $kingdom , $phylum , $taxclass ,

> # $taxorder , $family , $genus , $taxonomicComments ,

> # $informalTaxonomy , $infraspecies , $completeDistribution ,

> # gRank

>

> $resultsSummary

> name value

> 1 page 0

> 2 recordsPerPage 5

> 3 totalPages 26

> 4 totalResults 126

> 5 species_total 103

> 6 total 23

> 7 classes 0

> 8 subclasses 0

> 9 formations 0

> 10 divisions 0

> 11 macrogroups 1

> 12 groups 1

> 13 alliances 3

> 14 associations 18

> 15 terrestrialEcologicalSystems 0

```

See the vignette (https://docs.ropensci.org/natserv/articles/natserv.html) for more examples.

Meta

Please report any issues or bugs.
License: MIT
Get citation information for natserv in R doing citation(package = 'natserv')
Please note that this package is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

Owner

Name: rOpenSci
Login: ropensci
Kind: organization
Email: info@ropensci.org
Location: Berkeley, CA

Website: https://ropensci.org/
Twitter: rOpenSci
Repositories: 307
Profile: https://github.com/ropensci

CodeMeta (codemeta.json)

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GitHub Events

Total

Issues event: 1
Issue comment event: 1
Push event: 1

Last Year

Issues event: 1
Issue comment event: 1
Push event: 1

Committers

Last synced: over 2 years ago

All Time

Total Commits: 91
Total Committers: 6
Avg Commits per committer: 15.167
Development Distribution Score (DDS): 0.099

Past Year

Commits: 1
Committers: 1
Avg Commits per committer: 1.0
Development Distribution Score (DDS): 0.0

Top Committers

Name	Email	Commits
Scott Chamberlain	m**s@g**m	82
Christopher Tracey	c**y@p**g	4
Maëlle Salmon	m**n@y**e	2
Christopher Tracey	c**y@n**g	1
Mairin Deith	m**h@g**m	1
rOpenSci Bot	m**t@g**m	1

Committer Domains (Top 20 + Academic)

natureserve.org: 1 paconserve.org: 1

Issues and Pull Requests

Last synced: 9 months ago

All Time

Total issues: 27
Total pull requests: 5
Average time to close issues: 5 months
Average time to close pull requests: 5 months
Total issue authors: 10
Total pull request authors: 4
Average comments per issue: 2.48
Average comments per pull request: 3.2
Merged pull requests: 2
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 0
Pull requests: 1
Average time to close issues: N/A
Average time to close pull requests: N/A
Issue authors: 0
Pull request authors: 1
Average comments per issue: 0
Average comments per pull request: 0.0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

maelle (1)
mokezonline (1)
alexkrohn (1)

Pull Request Authors

mikeroswell (2)

Top Labels

Issue Labels

Pull Request Labels

Packages

Total packages: 2
Total downloads:
- cran 4,756 last-month
Total docker downloads: 200,502

Total dependent packages: 2
(may contain duplicates)
Total dependent repositories: 3
(may contain duplicates)
Total versions: 9
Total maintainers: 1

cran.r-project.org: natserv

'NatureServe' Interface

Homepage: https://docs.ropensci.org/natserv
Documentation: http://cran.r-project.org/web/packages/natserv/natserv.pdf
License: MIT + file LICENSE
Latest release: 1.0.0
published about 6 years ago

Versions: 5
Dependent Packages: 1
Dependent Repositories: 3
Downloads: 4,756 Last month
Docker Downloads: 200,502

Rankings

Downloads: 7.8%

Forks count: 8.7%

Average: 15.3%

Dependent repos count: 16.5%

Stargazers count: 16.5%

Dependent packages count: 18.1%

Docker downloads count: 24.2%

Maintainers (1)

myrmecocystus@gmail.com

Last synced: 9 months ago

conda-forge.org: r-natserv

Homepage: https://github.com/ropensci/natserv
License: MIT
Latest release: 1.0.0
published about 6 years ago

Versions: 4
Dependent Packages: 1
Dependent Repositories: 0

Rankings

Dependent packages count: 28.8%

Dependent repos count: 34.0%

Average: 39.4%

Forks count: 44.7%

Stargazers count: 50.2%

Last synced: 10 months ago

Dependencies

DESCRIPTION cran

R >= 3.2.1 depends
crul >= 0.7.0 imports
jsonlite * imports
tibble * imports
testthat * suggests
vcr * suggests

.github/workflows/R-check.yml actions

actions/cache v2 composite
actions/checkout v2 composite
actions/upload-artifact v2 composite
r-lib/actions/setup-pandoc v1 composite
r-lib/actions/setup-r v1 composite